HHsearch alignment for GI: 254781016 and conserved domain: PRK01123

>PRK01123 shikimate kinase; Provisional.
Probab=99.57  E-value=2.3e-12  Score=106.87  Aligned_cols=228  Identities=18%  Similarity=0.240  Sum_probs=131.5

Q ss_pred             CCCEEEEEEECCCCCC-EEEECCEECCCCCHHHHHHHHHHHHHHHHCCC--EEEEEEECCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             7810799997178885-79987872566520689999997421676194--39999850233211012322479999999
Q gi|254781016|r   59 HLGTITHITVIDSDAD-CIILNGQKISSQSSFFKKTTQFCDLFRQFSKV--YFLIETSNNIPTKAGLASSASGFAALTLA  135 (355)
Q Consensus        59 ~~~T~T~v~~~~~~~d-~~~lnG~~~~~~~~~~~ri~~~l~~~r~~~~~--~~~I~S~N~fPtaaGLASSASgfAALa~A  135 (355)
T Consensus        28 dL~~~a~v~~~~~~~~~~~~~~~~~~~~-~~---l~~~~~~~~~~~~~i~~g~~i~i~s~IP~~~GL~SSSA~a~A~i~a  103 (283)
T PRK01123         28 DLKTTATVELSDSGSKIKGEVSGYPDAD-TR---LVERCVELVLERFGIDYGGTVRTESEIPVASGLKSSSAAANALVLA  103 (283)
T ss_pred             CCEEEEEEEECCCCCCCCCCCCCCCCCC-HH---HHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHH
T ss_conf             6459999998777764442005788756-38---9999999999862998775999955898667853789999999999


Q ss_pred             HHHHHCCCCCHHHHHHHHHHC--------CC---CCHHHHCCCCHHCCCCCCCCCCCEEEEECCCCCCCCEEEEEEECCC
Q ss_conf             999818899988999886521--------35---3034310562002578987654413101566686421589997287
Q gi|254781016|r  136 LFRIYSIPEKSESLSRVARLG--------SG---SACRSFYRGFCEWICGTDQNGMDSFAVPFNNQWPDLRIGLLKIIDR  204 (355)
Q Consensus       136 l~~~~~~~~~~~~lS~lARlG--------SG---SA~RSi~GG~v~W~~g~~~~~sds~a~~~~~~~~dl~~~i~iv~~~  204 (355)
T Consensus       104 ~~~~~~~~Ls~~ei~~la~ea~~~~g~siTGa~DDa~As~~GG~~ltdn~-----~~--~ii~~~~~-~~~~vV~ip--~  173 (283)
T PRK01123        104 TLDALGEKLDDLDILRLGVKASKEAGVTVTGAFDDACASYFGGVCVTDNR-----EM--KILKRDEV-EGPVVVLIP--P  173 (283)
T ss_pred             HHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCEEEEECC-----CC--EEEECCCC-CCCEEEEEC--C
T ss_conf             99985899899999999999862078152367511667744977998188-----74--36651489-985899989--9


Q ss_pred             CCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHH
Q ss_conf             66752105679887618568999973055099999999809999999999999998999870389956865788999999
Q gi|254781016|r  205 EKKIGSREAMEITRHHSPFFTQWTQQISTDLAHIKQAIIDQDFIKLGEVAEKNALKMHATMIAASPPLLYWQKETIQGME  284 (355)
Q Consensus       205 ~K~vsSt~gm~~~v~tSp~y~~r~~~~~~~~~~~~~ai~~~Df~~l~~i~e~dal~mHa~~~~s~P~~~Y~~~~t~~ii~  284 (355)
T Consensus       174 ~~~~t~~~~~~~~-----------~~i~~~~~~a~~~~~~g~~~~--------Am~~Ngl~~~~~--l~~--~--~---~  225 (283)
T PRK01123        174 EKAFSANVDVERM-----------KLIAPYVEMAFELALAGDYFK--------AMTLNGLLYSSA--LGF--P--T---E  225 (283)
T ss_pred             CCCCCCCCCHHHH-----------HHHHHHHHHHHHHHHCCCHHH--------HHHHHHHHHHHH--CCC--C--H---H
T ss_conf             7773762767888-----------774389999999987798989--------987502642454--179--8--7---9


Q ss_pred             HHHHHHHCC-CEEEEEECCCCEEEEEECHHHHHHHHHHHHHCCCCC
Q ss_conf             999974289-619999777981799955898999999976321003
Q gi|254781016|r  285 RVWDARQQS-IPIYFTLDAGPNLKLLFTHKIEETIKQFFPEITIID  329 (355)
Q Consensus       285 ~v~~~R~~g-~~v~fT~DAGPNv~il~~~~~~~~i~~~l~~i~~~~  329 (355)
T Consensus       226 ~~~~al~~GAlga~iS-GsGPsi~al~~~e~~~~v~ea~~~~G~vi  270 (283)
T PRK01123        226 PILDALEAGAVGAGLS-GTGPSYVALFDEENPEEVKEAWSKYGKVI  270 (283)
T ss_pred             HHHHHHHCCCEEEEEE-CCCCEEEEEECCCCHHHHHHHHHHCCCEE
T ss_conf             9999997598499982-68987999980776799999998679889