HHsearch alignment for GI: 254781016 and conserved domain: PRK01123
>PRK01123 shikimate kinase; Provisional.
Probab=99.57 E-value=2.3e-12 Score=106.87 Aligned_cols=228 Identities=18% Similarity=0.240 Sum_probs=131.5
Q ss_pred CCCEEEEEEECCCCCC-EEEECCEECCCCCHHHHHHHHHHHHHHHHCCC--EEEEEEECCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 7810799997178885-79987872566520689999997421676194--39999850233211012322479999999
Q gi|254781016|r 59 HLGTITHITVIDSDAD-CIILNGQKISSQSSFFKKTTQFCDLFRQFSKV--YFLIETSNNIPTKAGLASSASGFAALTLA 135 (355)
Q Consensus 59 ~~~T~T~v~~~~~~~d-~~~lnG~~~~~~~~~~~ri~~~l~~~r~~~~~--~~~I~S~N~fPtaaGLASSASgfAALa~A 135 (355)
T Consensus 28 dL~~~a~v~~~~~~~~~~~~~~~~~~~~-~~---l~~~~~~~~~~~~~i~~g~~i~i~s~IP~~~GL~SSSA~a~A~i~a 103 (283)
T PRK01123 28 DLKTTATVELSDSGSKIKGEVSGYPDAD-TR---LVERCVELVLERFGIDYGGTVRTESEIPVASGLKSSSAAANALVLA 103 (283)
T ss_pred CCEEEEEEEECCCCCCCCCCCCCCCCCC-HH---HHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHH
T ss_conf 6459999998777764442005788756-38---9999999999862998775999955898667853789999999999
Q ss_pred HHHHHCCCCCHHHHHHHHHHC--------CC---CCHHHHCCCCHHCCCCCCCCCCCEEEEECCCCCCCCEEEEEEECCC
Q ss_conf 999818899988999886521--------35---3034310562002578987654413101566686421589997287
Q gi|254781016|r 136 LFRIYSIPEKSESLSRVARLG--------SG---SACRSFYRGFCEWICGTDQNGMDSFAVPFNNQWPDLRIGLLKIIDR 204 (355)
Q Consensus 136 l~~~~~~~~~~~~lS~lARlG--------SG---SA~RSi~GG~v~W~~g~~~~~sds~a~~~~~~~~dl~~~i~iv~~~ 204 (355)
T Consensus 104 ~~~~~~~~Ls~~ei~~la~ea~~~~g~siTGa~DDa~As~~GG~~ltdn~-----~~--~ii~~~~~-~~~~vV~ip--~ 173 (283)
T PRK01123 104 TLDALGEKLDDLDILRLGVKASKEAGVTVTGAFDDACASYFGGVCVTDNR-----EM--KILKRDEV-EGPVVVLIP--P 173 (283)
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCEEEEECC-----CC--EEEECCCC-CCCEEEEEC--C
T ss_conf 99985899899999999999862078152367511667744977998188-----74--36651489-985899989--9
Q ss_pred CCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHH
Q ss_conf 66752105679887618568999973055099999999809999999999999998999870389956865788999999
Q gi|254781016|r 205 EKKIGSREAMEITRHHSPFFTQWTQQISTDLAHIKQAIIDQDFIKLGEVAEKNALKMHATMIAASPPLLYWQKETIQGME 284 (355)
Q Consensus 205 ~K~vsSt~gm~~~v~tSp~y~~r~~~~~~~~~~~~~ai~~~Df~~l~~i~e~dal~mHa~~~~s~P~~~Y~~~~t~~ii~ 284 (355)
T Consensus 174 ~~~~t~~~~~~~~-----------~~i~~~~~~a~~~~~~g~~~~--------Am~~Ngl~~~~~--l~~--~--~---~ 225 (283)
T PRK01123 174 EKAFSANVDVERM-----------KLIAPYVEMAFELALAGDYFK--------AMTLNGLLYSSA--LGF--P--T---E 225 (283)
T ss_pred CCCCCCCCCHHHH-----------HHHHHHHHHHHHHHHCCCHHH--------HHHHHHHHHHHH--CCC--C--H---H
T ss_conf 7773762767888-----------774389999999987798989--------987502642454--179--8--7---9
Q ss_pred HHHHHHHCC-CEEEEEECCCCEEEEEECHHHHHHHHHHHHHCCCCC
Q ss_conf 999974289-619999777981799955898999999976321003
Q gi|254781016|r 285 RVWDARQQS-IPIYFTLDAGPNLKLLFTHKIEETIKQFFPEITIID 329 (355)
Q Consensus 285 ~v~~~R~~g-~~v~fT~DAGPNv~il~~~~~~~~i~~~l~~i~~~~ 329 (355)
T Consensus 226 ~~~~al~~GAlga~iS-GsGPsi~al~~~e~~~~v~ea~~~~G~vi 270 (283)
T PRK01123 226 PILDALEAGAVGAGLS-GTGPSYVALFDEENPEEVKEAWSKYGKVI 270 (283)
T ss_pred HHHHHHHCCCEEEEEE-CCCCEEEEEECCCCHHHHHHHHHHCCCEE
T ss_conf 9999997598499982-68987999980776799999998679889