HHsearch alignment for GI: 254781016 and conserved domain: PRK02534
>PRK02534 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional.
Probab=99.18 E-value=1.4e-07 Score=73.41 Aligned_cols=283 Identities=16% Similarity=0.099 Sum_probs=154.1
Q ss_pred EEEECCCCEEEEECCCCCCHHHCCCCCCCEEEEECCCCEEEEEEECCCCCCEEEECCEECCCCCHHHHHHHHHHHHHHHH
Q ss_conf 78974884248811677670117578984346812781079999717888579987872566520689999997421676
Q gi|254781016|r 24 SSAFLPSNIALCKYWGKRDSKLNLPLNNSLSLSLGHLGTITHITVIDSDADCIILNGQKISSQSSFFKKTTQFCDLFRQF 103 (355)
Q Consensus 24 ~ta~ap~NIALIKYWGK~d~~l~lP~n~SiS~TL~~~~T~T~v~~~~~~~d~~~lnG~~~~~~~~~~~ri~~~l~~~r~~ 103 (355)
T Consensus 6 l~apAKINL~L~-V~~kr~dGyH--~l~s~~~~i~-l~D~i~i~~~~~~~i~~~~~~~~~~~~~~--Nlv~ka~~~l~~~ 79 (308)
T PRK02534 6 LIAPAKINLHLE-ILGDRPDGFH--ELAMVMQSID-LADRLEFRNNGDGTIKLRCDHPDLSTDDD--NLIYRAAQLLRKR 79 (308)
T ss_pred EEECEEEECCEE-CCCCCCCCCC--EEEEEEEEEC-CCCEEEEEECCCCCEEEEECCCCCCCCCC--CHHHHHHHHHHHH
T ss_conf 980436810430-1887999985--0478999816-88399999989998899868876888986--4999999999996
Q ss_pred CCC---EEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHCCCCHHCCCCCCCCCC
Q ss_conf 194---39999850233211012322479999999999818899988999886521353034310562002578987654
Q gi|254781016|r 104 SKV---YFLIETSNNIPTKAGLASSASGFAALTLALFRIYSIPEKSESLSRVARLGSGSACRSFYRGFCEWICGTDQNGM 180 (355)
Q Consensus 104 ~~~---~~~I~S~N~fPtaaGLASSASgfAALa~Al~~~~~~~~~~~~lS~lARlGSGSA~RSi~GG~v~W~~g~~~~~s 180 (355)
T Consensus 80 ~~~~~~gv~I~l~KnIPv~aGLGGGSsdAAa~L~~Ln~l~~~~ls~~~L~~ia~~lGsDVPffl~g~~a~-~~G~Ge~-- 156 (308)
T PRK02534 80 FPFAELGVDITLEKNIPIGAGLAGGSSDAAAVLVGLNLLWGLGLTQPELESLAAELGSDVPFCIAGGTQL-CFGRGEI-- 156 (308)
T ss_pred CCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCEECCCEEE-EECCCCE--
T ss_conf 3999886589998368866788840689999999999984799998999998751168855022085189-8358867--
Q ss_pred CEEEEECCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH--
Q ss_conf 413101566686421589997287667521056798876185689999730550999999998099999999999999--
Q gi|254781016|r 181 DSFAVPFNNQWPDLRIGLLKIIDREKKIGSREAMEITRHHSPFFTQWTQQISTDLAHIKQAIIDQDFIKLGEVAEKNA-- 258 (355)
Q Consensus 181 ds~a~~~~~~~~dl~~~i~iv~~~~K~vsSt~gm~~~v~tSp~y~~r~~~~~~~~~~~~~ai~~~Df~~l~~i~e~da-- 258 (355)
T Consensus 157 -l~pl~---~~~~~~~-llv~~P~~~--vST~~~y~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~ 225 (308)
T PRK02534 157 -LEPLP---DLDSLGV-VLAKYPSLS--VSTPWAYKTYRQ--QFGDTYLSDEEDFEQRRQALRSGSLLQAI--SAKDPPP 225 (308)
T ss_pred -EEECC---CCCCCEE-EEEECCCCC--CCCHHHHHHHHH--HCCCCCCCCCHHHHHHHHHCCCCHHHHHH--HHCCHHH
T ss_conf -67888---7765649-999589998--274999999987--50343357603455555421310688988--7347898
Q ss_pred --HHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHHC-CC-EEEEEECCCCEEEEEEC-HHHHHHHHHHHHHCCCCCCCCC
Q ss_conf --9899987038995686578899999999997428-96-19999777981799955-8989999999763210036888
Q gi|254781016|r 259 --LKMHATMIAASPPLLYWQKETIQGMERVWDARQQ-SI-PIYFTLDAGPNLKLLFT-HKIEETIKQFFPEITIIDPLDS 333 (355)
Q Consensus 259 --l~mHa~~~~s~P~~~Y~~~~t~~ii~~v~~~R~~-g~-~v~fT~DAGPNv~il~~-~~~~~~i~~~l~~i~~~~~~~~ 333 (355)
T Consensus 226 l~NdLe~~a~~~~-------P~i~~~~---~~L~~~~Ga~~~~mS-GSGstvFglf~~~~~A~~a~~~l~~---~~p~~~ 291 (308)
T PRK02534 226 LRNDLQKVVLPEY-------PQVAKLL---ELLSSLPGCLGTMMS-GSGPTCFALFEDQEQAEQALEQVRE---AFADPG 291 (308)
T ss_pred HHHHHHHHHHHCC-------HHHHHHH---HHHHHCCCCCEEEEE-CHHHHHEEEECCHHHHHHHHHHHHH---HCCCCC
T ss_conf 8643699988739-------4999999---999744798888997-2410003797899999999999998---678999
Q ss_pred CCCCCCC
Q ss_conf 7512000
Q gi|254781016|r 334 PDLWSTK 340 (355)
Q Consensus 334 ~~~~~~~ 340 (355)
T Consensus 292 ~~~~v~~ 298 (308)
T PRK02534 292 LDAWVCQ 298 (308)
T ss_pred CCEEEEC
T ss_conf 8689751