HHsearch alignment for GI: 254781016 and conserved domain: PRK04344
>PRK04344 consensus.
Probab=99.35 E-value=4.3e-09 Score=83.96 Aligned_cols=267 Identities=16% Similarity=0.138 Sum_probs=159.6
Q ss_pred CEEEECCCCEEEE-ECCCCCCHHHCCCCCCCEEEEECCCCEEEEEEECCCCCCEEEECCEECCCCCHHHHHHHHHHHHHH
Q ss_conf 3789748842488-116776701175789843468127810799997178885799878725665206899999974216
Q gi|254781016|r 23 KSSAFLPSNIALC-KYWGKRDSKLNLPLNNSLSLSLGHLGTITHITVIDSDADCIILNGQKISSQSSFFKKTTQFCDLFR 101 (355)
Q Consensus 23 ~~ta~ap~NIALI-KYWGK~d~~l~lP~n~SiS~TL~~~~T~T~v~~~~~~~d~~~lnG~~~~~~~~~~~ri~~~l~~~r 101 (355)
T Consensus 2 ~i~~kapAKINL~L~V~~kr~dG--yH~l~s~~~~i~-l~D~i~i~~~~~~~i~i~~~~~~~p~~~~--Nlv~ka~~~l~ 76 (284)
T PRK04344 2 KIYEKAPAKINLSLDTLFKRDDG--YHEVEMIMTTID-LADRLTLEELKEDKIVVDSENRFVPSDQR--NLAYQAAKLLK 76 (284)
T ss_pred CEEEEECEEEECCCCCCCCCCCC--CCEEEEEEEEEC-CCCEEEEEECCCCCEEEEECCCCCCCCCC--HHHHHHHHHHH
T ss_conf 05167121285333227758999--822689999956-88299999988998899978876888762--19999999999
Q ss_pred HHCCC--EEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHCCCCHHCCCCCCCCC
Q ss_conf 76194--3999985023321101232247999999999981889998899988652135303431056200257898765
Q gi|254781016|r 102 QFSKV--YFLIETSNNIPTKAGLASSASGFAALTLALFRIYSIPEKSESLSRVARLGSGSACRSFYRGFCEWICGTDQNG 179 (355)
Q Consensus 102 ~~~~~--~~~I~S~N~fPtaaGLASSASgfAALa~Al~~~~~~~~~~~~lS~lARlGSGSA~RSi~GG~v~W~~g~~~~~ 179 (355)
T Consensus 77 ~~~~~~~~~~I~l~KnIPvgaGLGGGSSdAAa~L~~Ln~l~~l~ls~~~L~~la~~lGaDVPffl~g~~a~-~~G~Ge~- 154 (284)
T PRK04344 77 ERYNIKKGVTISIDKHIPVAAGLAGGSSDAAATLRGLNRLWNLGLSLEELAELGSEIGSDVPFCVYGGTAL-ATGRGEK- 154 (284)
T ss_pred HHHCCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCEEEEEECCCEE-EECCCCE-
T ss_conf 97598997699999789886788986157999999999985689999999999986279864898276189-9858965-
Q ss_pred CCEEEEECCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
Q ss_conf 44131015666864215899972876675210567988761856899997305509999999980999999999999999
Q gi|254781016|r 180 MDSFAVPFNNQWPDLRIGLLKIIDREKKIGSREAMEITRHHSPFFTQWTQQISTDLAHIKQAIIDQDFIKLGEVAEKNAL 259 (355)
Q Consensus 180 sds~a~~~~~~~~dl~~~i~iv~~~~K~vsSt~gm~~~v~tSp~y~~r~~~~~~~~~~~~~ai~~~Df~~l~~i~e~dal 259 (355)
T Consensus 155 --l--~~l~~-~~~~~~--vlv~P~~--~vST~~vy~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~N--- 215 (284)
T PRK04344 155 --I--EPLPT-PPSCWV--VLAKPNI--GVSTPDIFKNLNLD-------RIEHPDTDKMVEAIENGDYQQICQSLGN--- 215 (284)
T ss_pred --E--EECCC-CCCCEE--EEECCCC--CCCHHHHHHHCCCC-------CCCCCCHHHHHHHHHCCCHHHHHHHCCC---
T ss_conf --0--79987-787589--9988999--96739999745800-------0468777899998862799999977348---
Q ss_pred HHHHHHHCCCCCEEEECHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEEEECHH-HHHHHHHHHHHC
Q ss_conf 899987038995686578899999999997428961999977798179995589-899999997632
Q gi|254781016|r 260 KMHATMIAASPPLLYWQKETIQGMERVWDARQQSIPIYFTLDAGPNLKLLFTHK-IEETIKQFFPEI 325 (355)
Q Consensus 260 ~mHa~~~~s~P~~~Y~~~~t~~ii~~v~~~R~~g~~v~fT~DAGPNv~il~~~~-~~~~i~~~l~~i 325 (355)
T Consensus 216 dle~~~~~~-------~P~i~~i~~~---l~~~Ga~~~~mSGSGstvF~lf~~~~~A~~~~~~lk~~ 272 (284)
T PRK04344 216 VLEPVTLAK-------HPEIAKIKNR---MLKFGADAALMSGSGPTVFGLCRKESRAQRIYNGLKGF 272 (284)
T ss_pred CHHHHHHHH-------CHHHHHHHHH---HHHCCCCEEEEECCCCCEEEEECCHHHHHHHHHHHHHH
T ss_conf 568999985-------9399999999---99679986899772512489989999999999987875