HHsearch alignment for GI: 254781016 and conserved domain: PRK04943
>PRK04943 consensus.
Probab=98.59 E-value=2.3e-05 Score=57.84 Aligned_cols=253 Identities=13% Similarity=0.052 Sum_probs=138.2
Q ss_pred CCEEEECCCCEEEE-ECCCCCCHHHCCCCCCCEEEEECCCCEEEEEEECCCCCCEEEECCE--ECCCCCHHHHHHHHHHH
Q ss_conf 63789748842488-1167767011757898434681278107999971788857998787--25665206899999974
Q gi|254781016|r 22 EKSSAFLPSNIALC-KYWGKRDSKLNLPLNNSLSLSLGHLGTITHITVIDSDADCIILNGQ--KISSQSSFFKKTTQFCD 98 (355)
Q Consensus 22 ~~~ta~ap~NIALI-KYWGK~d~~l~lP~n~SiS~TL~~~~T~T~v~~~~~~~d~~~lnG~--~~~~~~~~~~ri~~~l~ 98 (355)
T Consensus 4 ~~~~~~aPAKINL~L~V~~kr~DG--YH~i~S~~~~i-dl~D~l~i~--~~~~~~i~~~~~~~~i~~~~---Nli~kA~~ 75 (288)
T PRK04943 4 GTTRWPSPAKLNLFLYINGRTENG--YHELQTLFQFL-DHGDELTIT--ANNSGNITLSPAIEGVPLED---NLIWKAAT 75 (288)
T ss_pred CCEEEECCEEEECCCCCCCCCCCC--CCEEEEEEEEE-CCCEEEEEE--ECCCCCEEEECCCCCCCCCC---CHHHHHHH
T ss_conf 874871311682340238879999--87157899981-675099999--98999889817867898767---49999999
Q ss_pred HHHHHCCC--EEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHCCCCHHCCCCCC
Q ss_conf 21676194--3999985023321101232247999999999981889998899988652135303431056200257898
Q gi|254781016|r 99 LFRQFSKV--YFLIETSNNIPTKAGLASSASGFAALTLALFRIYSIPEKSESLSRVARLGSGSACRSFYRGFCEWICGTD 176 (355)
Q Consensus 99 ~~r~~~~~--~~~I~S~N~fPtaaGLASSASgfAALa~Al~~~~~~~~~~~~lS~lARlGSGSA~RSi~GG~v~W~~g~~ 176 (355)
T Consensus 76 ~l~~~~~~~~~~~I~l~KnIPv~AGLGGGSSnAAa~L~~Ln~l~~l~ls~~~l~~ia~~lGADVPffl~~~~a-~~~G~G 154 (288)
T PRK04943 76 ALQNAAQCSLGAHIELHKILPMGGGIGGGSSNAATTLVALNYLWQTGLSDDELAEIGLALGADVPVFVRGFAA-FAEGVG 154 (288)
T ss_pred HHHHHHCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCEEEEECCCCE-EEECCC
T ss_conf 9999769998808999971787578887620699999999998479999899999887439985768617768-998688
Q ss_pred CCCCCEEEEECCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf 76544131015666864215899972876675210567988761856899997305509999999980999999999999
Q gi|254781016|r 177 QNGMDSFAVPFNNQWPDLRIGLLKIIDREKKIGSREAMEITRHHSPFFTQWTQQISTDLAHIKQAIIDQDFIKLGEVAEK 256 (355)
Q Consensus 177 ~~~sds~a~~~~~~~~dl~~~i~iv~~~~K~vsSt~gm~~~v~tSp~y~~r~~~~~~~~~~~~~ai~~~Df~~l~~i~e~ 256 (355)
T Consensus 155 E~l~---~~~~----~~~~--~lLv~P--~~~iST~~vf~~------~~~~~~~~~~~~~~~~~~~~~NDLE~~~----- 212 (288)
T PRK04943 155 EKLS---PATP----EEKW--YLVVRP--NVSIATVDIFTH------PDLTRNTPKRDLETLLNTPYVNDCEKIV----- 212 (288)
T ss_pred CEEE---ECCC----CCCE--EEEECC--CCCCCCHHHHCC------CHHCCCCCCCCHHHHHHCHHCCCCHHHH-----
T ss_conf 5742---6677----7767--999879--999727788059------3001376521799987360047857999-----
Q ss_pred HHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEEEEC-HHHHHHHHHHHHHCC
Q ss_conf 9998999870389956865788999999999974289619999777981799955-898999999976321
Q gi|254781016|r 257 NALKMHATMIAASPPLLYWQKETIQGMERVWDARQQSIPIYFTLDAGPNLKLLFT-HKIEETIKQFFPEIT 326 (355)
Q Consensus 257 dal~mHa~~~~s~P~~~Y~~~~t~~ii~~v~~~R~~g~~v~fT~DAGPNv~il~~-~~~~~~i~~~l~~i~ 326 (355)
T Consensus 213 ---------~~~-------~PeI~~~~~~---l~~~~-~~~MS-GSGstvFglf~s~~~A~~~~~~l~~~~ 262 (288)
T PRK04943 213 ---------RML-------YPEVDKQLSW---LLQYA-PSRLT-GTGSCVFAEFSSRSEAEAILAQLSDNV 262 (288)
T ss_pred ---------HHH-------CHHHHHHHHH---HHCCC-CCEEE-CHHHEEEEEECCHHHHHHHHHHCCCCC
T ss_conf ---------986-------8899999999---85659-87132-640558899899999999998689767