HHsearch alignment for GI: 254781016 and conserved domain: TIGR00144

>TIGR00144 beta_RFAP_syn beta-ribofuranosylaminobenzene 5'-phosphate synthase family; InterPro: IPR004422 This protein family contains several archaeal examples of beta-ribofuranosylaminobenzene 5-prime-phosphate synthase (beta-RFAP synthase), an enzyme involved in methanopterin biosynthesis . In some species, two members of this family are found. It is unclear whether both act as beta-RFAP synthase. This family is related to the GHMP kinases (Galactokinase, Homoserine kinase, Mevalonate kinase, Phosphomevalonate kinase). Members are found so far only in the Archaea and in Methylobacterium extorquens.They have an amino-terminal domain probably related to ATP binding..
Probab=91.56  E-value=1.3  Score=24.76  Aligned_cols=280  Identities=15%  Similarity=0.118  Sum_probs=157.6

Q ss_pred             CCEEEEECCCCCCHHHCCCCCCCEEEEECCCCEEEEEEECCC--CCCEEEECCEECC-CCCHHHHHHHHHHHHHHHHCC-
Q ss_conf             842488116776701175789843468127810799997178--8857998787256-652068999999742167619-
Q gi|254781016|r   30 SNIALCKYWGKRDSKLNLPLNNSLSLSLGHLGTITHITVIDS--DADCIILNGQKIS-SQSSFFKKTTQFCDLFRQFSK-  105 (355)
Q Consensus        30 ~NIALIKYWGK~d~~l~lP~n~SiS~TL~~~~T~T~v~~~~~--~~d~~~lnG~~~~-~~~~~~~ri~~~l~~~r~~~~-  105 (355)
T Consensus         9 ~~~~l~dl~g~~g-----~~dgg~g~~l~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~   83 (337)
T TIGR00144         9 LHLTLIDLNGSIG-----RVDGGVGLALEEPELEIGGKESDDLGVEFDKKLVGKLGEPYNKSVRDRVYEAAAKTLDYIGG   83 (337)
T ss_pred             EEEEEEECCCCCC-----CCCCCCCEEECCCCEEEECCCCCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             0345552166422-----22455210112653144023333333101135565411045677888889989999987267


Q ss_pred             -CEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCC---HHHHCCCCHHCCCCCC---CC
Q ss_conf             -4399998502332110123224799999999998188999889998865213530---3431056200257898---76
Q gi|254781016|r  106 -VYFLIETSNNIPTKAGLASSASGFAALTLALFRIYSIPEKSESLSRVARLGSGSA---CRSFYRGFCEWICGTD---QN  178 (355)
Q Consensus       106 -~~~~I~S~N~fPtaaGLASSASgfAALa~Al~~~~~~~~~~~~lS~lARlGSGSA---~RSi~GG~v~W~~g~~---~~  178 (355)
T Consensus        84 d~~~~~~~~~~~~~~~glg~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~gg~~g~g~~~~~~gg~~~d~g~~~g~g~~  163 (337)
T TIGR00144        84 DEGFDLEVLSLFPAHSGLGSGTQLSLAVGRLVSELYGLELTARELAEIVGRGGTSGIGVAAFEDGGFLVDGGHSTGKGKE  163 (337)
T ss_pred             CCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCEEEECCCCEEEECCCCCCCCCC
T ss_conf             65511687530320014566512467788888887324310455666532777543301222157526645654466643


Q ss_pred             CCCE------E-EEEC----CCCCC-CCEEEEEEECCCCCCCCCCHHHHHHHHHCHHHHHHHHH-HHHHHHHHHHHHHHC
Q ss_conf             5441------3-1015----66686-42158999728766752105679887618568999973-055099999999809
Q gi|254781016|r  179 GMDS------F-AVPF----NNQWP-DLRIGLLKIIDREKKIGSREAMEITRHHSPFFTQWTQQ-ISTDLAHIKQAIIDQ  245 (355)
Q Consensus       179 ~sds------~-a~~~----~~~~~-dl~~~i~iv~~~~K~vsSt~gm~~~v~tSp~y~~r~~~-~~~~~~~~~~ai~~~  245 (355)
T Consensus       164 ~~~~~p~~~~~g~~p~p~~~~~d~p~~w~~-~~~~p~~~~~~~g~~~~~~~~~~cp~pl~~~~~~~~~~l~~~~p~~~~~  242 (337)
T TIGR00144       164 KEDFLPSSASKGAKPAPVIARLDFPEDWNV-ILAIPELDRGVFGKREVNLFQKYCPVPLEDVEKLCHLILMKMLPAVVEG  242 (337)
T ss_pred             CHHCCCCCCCCCCCCCCEEEECCCCCCCCE-EEEEECCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             000255321256776531221257745415-8873132111244113344554258766788999999998765566630


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHH-HHHHCCCEEEEEECCCCEEEEEECHH---HHHHHHHH
Q ss_conf             999999999999998999870389956865788999999999-97428961999977798179995589---89999999
Q gi|254781016|r  246 DFIKLGEVAEKNALKMHATMIAASPPLLYWQKETIQGMERVW-DARQQSIPIYFTLDAGPNLKLLFTHK---IEETIKQF  321 (355)
Q Consensus       246 Df~~l~~i~e~dal~mHa~~~~s~P~~~Y~~~~t~~ii~~v~-~~R~~g~~v~fT~DAGPNv~il~~~~---~~~~i~~~  321 (355)
T Consensus       243 ~~~~~g~~~~~----~~~~g~~~---~~--~~~~~~~~~~~~~~~~~~g~~~~g~~~~gp~~~~~~d~~~~~~~~~~~~~  313 (337)
T TIGR00144       243 DLDDFGEALNK----LQGLGFKK---VE--LELQGPLIKGLIDLLDKDGAPGAGLSSFGPTVYAVTDEKPGGIAGALNDI  313 (337)
T ss_pred             HHHHHHHHHHH----HHHCCCHH---HH--HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHH
T ss_conf             15677788877----76313023---44--55533578888876541475313422247524652254401467778875


Q ss_pred             HHH
Q ss_conf             763
Q gi|254781016|r  322 FPE  324 (355)
Q Consensus       322 l~~  324 (355)
T Consensus       314 ~~~  316 (337)
T TIGR00144       314 FGP  316 (337)
T ss_pred             HHC
T ss_conf             200