HHsearch alignment for GI: 254781016 and conserved domain: TIGR00154
>TIGR00154 ispE 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; InterPro: IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase is a member of the family of GHMP kinases that were previously designated as conserved hypothetical protein YchB or as isopentenyl monophosphate kinase. In Lycopersicon esculentum (tomato) and Escherichia coli the protein has been indentified as 4-diphosphocytidyl-2C-methyl-D-erythritol kinase, an enzyme of the deoxyxylulose phosphate pathway of terpenoid biosynthesis.; GO: 0050515 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity, 0016114 terpenoid biosynthetic process.
Probab=97.69 E-value=0.0028 Score=43.29 Aligned_cols=239 Identities=16% Similarity=0.145 Sum_probs=132.0
Q ss_pred EEEEEEECCCCCCEEEECCEECCCCCHHHHHHHHHHHHHHHHCC------------CEEEEEEECCCCCCCHHHHHHHHH
Q ss_conf 07999971788857998787256652068999999742167619------------439999850233211012322479
Q gi|254781016|r 62 TITHITVIDSDADCIILNGQKISSQSSFFKKTTQFCDLFRQFSK------------VYFLIETSNNIPTKAGLASSASGF 129 (355)
Q Consensus 62 T~T~v~~~~~~~d~~~lnG~~~~~~~~~~~ri~~~l~~~r~~~~------------~~~~I~S~N~fPtaaGLASSASgf 129 (355)
T Consensus 40 D~i~i~~~~q~~~i~l~~~~~~~~~e~-~NL~yrAa~Ll~~~~~~~nfsH~~~~~~~G~~I~~~K~iP~~aGLgGGSsdA 118 (322)
T TIGR00154 40 DKIEISVRSQDDDIRLSKGDSDVPDEE-RNLIYRAAKLLKNKANSKNFSHSVIKVKKGVNIEITKVIPMAAGLGGGSSDA 118 (322)
T ss_pred CEEEEEEECCCCCEEECCCCCCCCCCH-HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCHHHHH
T ss_conf 737999853578478737789888620-1069999999998510023334301256761489864146657765404579
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHCC-CCHHC-CCCCCCCCCCEEEEECCCCCCCCEEEEEEECCCCCC
Q ss_conf 9999999998188999889998865213530343105-62002-578987654413101566686421589997287667
Q gi|254781016|r 130 AALTLALFRIYSIPEKSESLSRVARLGSGSACRSFYR-GFCEW-ICGTDQNGMDSFAVPFNNQWPDLRIGLLKIIDREKK 207 (355)
Q Consensus 130 AALa~Al~~~~~~~~~~~~lS~lARlGSGSA~RSi~G-G~v~W-~~g~~~~~sds~a~~~~~~~~dl~~~i~iv~~~~K~ 207 (355)
T Consensus 119 A~~L~~LN~LW~~~LS~~EL~~lG~~lGaDvpffv~GY~~A~AtG~GE~i~-------~~~e~P~e~W~~~~----kP~~ 187 (322)
T TIGR00154 119 AAVLVGLNQLWNLNLSLEELAELGATLGADVPFFVSGYGTAFATGRGEIIT-------PLEEEPPEKWVVIA----KPRS 187 (322)
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCEEEECCCCCCCC-------CCCCCCCCCEEEEE----CCCC
T ss_conf 999998767762168878999998874698307863633121123442505-------78889874038897----2798
Q ss_pred C-CCCHHHHHHHHHCHHHHHHHHH-HHHHHH-------HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHH
Q ss_conf 5-2105679887618568999973-055099-------999999809999999999999998999870389956865788
Q gi|254781016|r 208 I-GSREAMEITRHHSPFFTQWTQQ-ISTDLA-------HIKQAIIDQDFIKLGEVAEKNALKMHATMIAASPPLLYWQKE 278 (355)
Q Consensus 208 v-sSt~gm~~~v~tSp~y~~r~~~-~~~~~~-------~~~~ai~~~Df~~l~~i~e~dal~mHa~~~~s~P~~~Y~~~~ 278 (355)
T Consensus 188 ~~~ST~~vyq~~~-qkfGknyLp~~~~~~~~~ktihaG~~l~~i~~~~~~~~~~~~~ND---lEkv~l~~~-------~~ 256 (322)
T TIGR00154 188 VSVSTAVVYQAYK-QKFGKNYLPRNTPKRAKEKTIHAGGLLKKIEEKLLQLLDSNLKND---LEKVALDAH-------TE 256 (322)
T ss_pred CCCCCHHHHHHHH-HHCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCC---CCHHHHCCC-------CC
T ss_conf 5327389871245-531522478777656776320025102456676577665404772---020000157-------61
Q ss_pred HHHHHHHHHHHH-HCCCEEE-EEECCCCEEEEEECH-HHHHHHHHHHHHCCC
Q ss_conf 999999999974-2896199-997779817999558-989999999763210
Q gi|254781016|r 279 TIQGMERVWDAR-QQSIPIY-FTLDAGPNLKLLFTH-KIEETIKQFFPEITI 327 (355)
Q Consensus 279 t~~ii~~v~~~R-~~g~~v~-fT~DAGPNv~il~~~-~~~~~i~~~l~~i~~ 327 (355)
T Consensus 257 V~~~l---~~l~~~g~~~~~f~s-GsG~~vF~l~~~e~ea~~v~~~a~E~L~ 304 (322)
T TIGR00154 257 VAQAL---NWLLEYGLAPERFLS-GSGPCVFALFDEEAEAEQVLEQAPEKLN 304 (322)
T ss_pred HHHHH---HHHHHHCCCCEEEEE-CCCHHHHHCCHHHHHHHHHHHHCCHHHC
T ss_conf 89999---999860588425764-4854664215114678999873440005