HHsearch alignment of GI: 254781016 and MMDB domain: 2cz9_A_1-178_344-350
>2cz9_A (A:1-178,A:344-350) Probable galactokinase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.50A {Pyrococcus horikoshii} PDB: 2dei_A* 2dej_A* 1s4e_A*
Probab=98.37 E-value=4.6e-06 Score=62.34 Aligned_cols=141 Identities=15% Similarity=0.106 Sum_probs=84.9
Q ss_pred EEEECCCCEEEEECCCCCCHHHCCCCCCCEEEEECCCCEEEEEEECC-------CCCCEEEECCEECCCCCHHHHHHHHH
Q ss_conf 78974884248811677670117578984346812781079999717-------88857998787256652068999999
Q gi|254781016|r 24 SSAFLPSNIALCKYWGKRDSKLNLPLNNSLSLSLGHLGTITHITVID-------SDADCIILNGQKISSQSSFFKKTTQF 96 (355)
Q Consensus 24 ~ta~ap~NIALIKYWGK~d~~l~lP~n~SiS~TL~~~~T~T~v~~~~-------~~~d~~~lnG~~~~~~~~~~~ri~~~ 96 (355)
.+++||-.|.|+= .+- ..+--+.|.+.++ .++..+++..+ ...+.......+.........-+..+
T Consensus 2 i~~~aP~ki~l~G---e~~---d~~G~~~l~~ai~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (185)
T 2cz9_A 2 IKVKSPGRVNLIG---EHT---DYTYGYVMPMAIN-LYTKIEAEKHGEVILYSEHFGEERKFSLNDLRKENSWIDYVKGI 74 (185)
T ss_dssp EEEEEEEEEEEEC---TTC---GGGTCEEEEEEEE-EEEEEEEEEESSEEEEETTTTEEEEECTTCCCCCSSTHHHHHHH
T ss_pred EEEECCEEEEEEE---CCE---EECCCEEEEEEEC-CCEEEEEEECCCEEEEECCCCCCEEEECCCCCCCCCHHHHHHHE
T ss_conf 8999389789787---888---6389777814712-51999999889679997778973899753023456466662320
Q ss_pred HHHHHHHCC--CEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHC--------CC--CCHHHH
Q ss_conf 742167619--439999850233211012322479999999999818899988999886521--------35--303431
Q gi|254781016|r 97 CDLFRQFSK--VYFLIETSNNIPTKAGLASSASGFAALTLALFRIYSIPEKSESLSRVARLG--------SG--SACRSF 164 (355)
Q Consensus 97 l~~~r~~~~--~~~~I~S~N~fPtaaGLASSASgfAALa~Al~~~~~~~~~~~~lS~lARlG--------SG--SA~RSi 164 (355)
+..+++... ..+.|....+.|.++||+||||..+|+..|+++++++.++.+++..+++.. +| .-+-++
T Consensus 75 ~~~l~~~~~~~~g~~i~i~s~iP~g~GLGSSaa~~va~~~al~~~~~~~l~~~~l~~l~~~~E~~~~g~~~g~~d~~~~~ 154 (185)
T 2cz9_A 75 FWVLKESDYEVGGIKGRVSGNLPLGAGLSSSASFEVGILETLDKLYNLKLDSLSKVLLAKKAENEFVGVPCGILDQFAVV 154 (185)
T ss_dssp HHHHHHTTCCCCEEEEEEECSCCTTSSSCHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTTCCCCCSHHHHHHH
T ss_pred EEHHHHCCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHH
T ss_conf 10134317867884788506634677545520246499999999727677748899999999898719974221456764
Q ss_pred CCCCHHC
Q ss_conf 0562002
Q gi|254781016|r 165 YRGFCEW 171 (355)
Q Consensus 165 ~GG~v~W 171 (355)
|||...-
T Consensus 155 ~gg~~~~ 161 (185)
T 2cz9_A 155 FGREGNV 161 (185)
T ss_dssp HCCTTEE
T ss_pred CCCCCEE
T ss_conf 0667779