HHsearch alignment of GI: 254781016 and MMDB domain: 3k17_A_1-210_351-365
>3k17_A (A:1-210,A:351-365) LIN0012 protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics, NEW YORK SGX research center for structural genomics; HET: PGE; 2.10A {Listeria innocua}
Probab=98.33 E-value=7.8e-06 Score=60.71 Aligned_cols=145 Identities=14% Similarity=0.143 Sum_probs=90.8
Q ss_pred CCCEEEECCCCEEEEECCCCCCHHHCCC-CCCCEEEEECCCCEEEEEEECCCCCCEEEECCEE-------------CCCC
Q ss_conf 7637897488424881167767011757-8984346812781079999717888579987872-------------5665
Q gi|254781016|r 21 NEKSSAFLPSNIALCKYWGKRDSKLNLP-LNNSLSLSLGHLGTITHITVIDSDADCIILNGQK-------------ISSQ 86 (355)
Q Consensus 21 ~~~~ta~ap~NIALIKYWGK~d~~l~lP-~n~SiS~TL~~~~T~T~v~~~~~~~d~~~lnG~~-------------~~~~ 86 (355)
....+++||--+=|+ |.+ ..++ --+.|++.+| .++..++ .+....++.+-... ...+
T Consensus 4 ~~~i~~~aPgkv~L~---Geh---~d~~~G~~~l~~ai~-~~~~i~~--~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 74 (225)
T 3k17_A 4 KNKLQVKIPGKLYVA---GEY---AVVESGHTAILTAVN-RYITLTL--EDSERNELWIPHYENPVSWPIGGELKPDGEH 74 (225)
T ss_dssp -CCEEEEEEEEEEEE---CTT---GGGSTTCEEEEEEEE-EEEEEEE--EECSSCEEECTTCSSCBCCCTTSCCCCSCGG
T ss_pred CCEEEEEEEEEEEEE---ECC---EEECCCCEEEEEEEC-CEEEEEE--EECCCCEEEEEECCCCEEEEECCCCCCCCCC
T ss_conf 886999996389999---988---983499269999971-5599999--9999985999865887279853555676652
Q ss_pred CHHHHHHH-HHHHHHHH----HCC--CEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHC---
Q ss_conf 20689999-99742167----619--439999850233211012322479999999999818899988999886521---
Q gi|254781016|r 87 SSFFKKTT-QFCDLFRQ----FSK--VYFLIETSNNIPTKAGLASSASGFAALTLALFRIYSIPEKSESLSRVARLG--- 156 (355)
Q Consensus 87 ~~~~~ri~-~~l~~~r~----~~~--~~~~I~S~N~fPtaaGLASSASgfAALa~Al~~~~~~~~~~~~lS~lARlG--- 156 (355)
........ .+...++. ..+ ..+.|....++|.++||+||||..+|++.|++++++.+++.+++-.+|..+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~i~s~iP~g~GLGSSAa~~va~~~al~~l~~~~l~~~~l~~la~~~E~~ 154 (225)
T 3k17_A 75 WTFTAEAINIATTFLKSEGIELTPVKXVIETELIDQSGAKYGLGSSAAATVAVINALXTKFYPEISXLKKFKLAALSHLV 154 (225)
T ss_dssp GHHHHHHHHHHHHHHHHTTCCCCCEEEEEEESSBCTTSCBCSSCHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
T ss_conf 06899999999999998089888952789721246566575545378899999999998434335699999999999877
Q ss_pred -----CC-CCHHHHCCCCHHCCCC
Q ss_conf -----35-3034310562002578
Q gi|254781016|r 157 -----SG-SACRSFYRGFCEWICG 174 (355)
Q Consensus 157 -----SG-SA~RSi~GG~v~W~~g 174 (355)
|| ..+-++|||++.-..+
T Consensus 155 ~~g~~sG~D~~~~~~Gg~~~~~~~ 178 (225)
T 3k17_A 155 VQGNGSCGDIASCXYGGWIAYTTF 178 (225)
T ss_dssp HHSSCCSHHHHHHHHCSEEEEECC
T ss_pred HHHCCCCCHHHHHHCCCEEEEECC
T ss_conf 510887301889974986999428