HHsearch results for GI: 254781016 and protein with PDBid: 1fi4_A
>1fi4_A Mevalonate 5-diphosphate decarboxylase; mixed alpha/beta structure, ATP binding, cholesterol biosynthesis, structural genomics, PSI; 2.27A {Saccharomyces cerevisiae} SCOP: d.14.1.5 d.58.26.2
Probab=100.00 E-value=0 Score=725.42 Aligned_cols=316 Identities=32% Similarity=0.543 Sum_probs=294.3
Q ss_pred HHHHCCCCCCCCCEEEECCCCEEEEECCCCCCHHHCCCCCCCEEEEE--CCCCEEEEEEECCC-CCCEEEECCEECCCCC
Q ss_conf 87403467877637897488424881167767011757898434681--27810799997178-8857998787256652
Q gi|254781016|r 11 RYIGECNPKINEKSSAFLPSNIALCKYWGKRDSKLNLPLNNSLSLSL--GHLGTITHITVIDS-DADCIILNGQKISSQS 87 (355)
Q Consensus 11 ~~~~~~~~~~~~~~ta~ap~NIALIKYWGK~d~~l~lP~n~SiS~TL--~~~~T~T~v~~~~~-~~d~~~lnG~~~~~~~ 87 (355)
-|+...+.....++||+||+||||||||||||+++|||+|||||+|| |.++|+|+|++++. ++|++||||++.+...
T Consensus 13 ~~~~~~~~~~~~~~t~~AP~NIAlIKYWGKrd~~l~lP~n~SiS~TL~~d~~~T~Ttv~~s~~~~~d~~~lNG~~~~~~~ 92 (416)
T 1fi4_A 13 GLVPRGSHMTVYTASVTAPVNIATLKYWGKRDTKLNLPTNSSISVTLSQDDLRTLTSAATAPEFERDTLWLNGEPHSIDN 92 (416)
T ss_dssp ----------CEEEEEEECCEEEEECCCCEEETTTTEESSCEEEEEBCTTTSCEEEEEEECTTCCSCBCTTTCCBSSSSS
T ss_pred CCCCCCCCEEEEEEEEEEECCEEEEECCCCCCCCCCCCCCCCEEEEECCCCCEEEEEEEECCCCCCCEEEECCEECCCCC
T ss_conf 86637870389999997534332640157668767899998147893699987789999788887787999998657630
Q ss_pred HHHHHHHHHHHHHHHH-----------CCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHC
Q ss_conf 0689999997421676-----------19439999850233211012322479999999999818899988999886521
Q gi|254781016|r 88 SFFKKTTQFCDLFRQF-----------SKVYFLIETSNNIPTKAGLASSASGFAALTLALFRIYSIPEKSESLSRVARLG 156 (355)
Q Consensus 88 ~~~~ri~~~l~~~r~~-----------~~~~~~I~S~N~fPtaaGLASSASgfAALa~Al~~~~~~~~~~~~lS~lARlG 156 (355)
++.+++.++++.++.. .+++++|+|+|||||||||||||||||||+.|++++++++++.+++|++||+|
T Consensus 93 ~r~~~~l~~ir~l~~~~~~~~~~~~~~~~~~l~I~S~NnfPtaaGLASSASg~AAl~~al~~l~~~~l~~~elS~lAR~G 172 (416)
T 1fi4_A 93 ERTQNCLRDLRQLRKEMESKDASLPTLSQWKLHIVSENNFPTAAGLASSAAGFAALVSAIAKLYQLPQSTSEISRIARKG 172 (416)
T ss_dssp SSHHHHHHHHHHHHHHHHTTCTTSCCGGGSCEEEEEEECCCTTSCCCHHHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHC
T ss_conf 88999999999999875401224653346228999956884224688899999999999999856778889999998610
Q ss_pred CCCCHHHHCCCCHHCCCCCCCCCCCEEEEECC--CCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHCHHHHHHHHH-HHH
Q ss_conf 35303431056200257898765441310156--668642158999728766752105679887618568999973-055
Q gi|254781016|r 157 SGSACRSFYRGFCEWICGTDQNGMDSFAVPFN--NQWPDLRIGLLKIIDREKKIGSREAMEITRHHSPFFTQWTQQ-IST 233 (355)
Q Consensus 157 SGSA~RSi~GG~v~W~~g~~~~~sds~a~~~~--~~~~dl~~~i~iv~~~~K~vsSt~gm~~~v~tSp~y~~r~~~-~~~ 233 (355)
|||||||+|||||+|+.|...|++|++++++. .|||+|+++|++|++++|+|+||+||+++++|||+|+.|++. ++.
T Consensus 173 SGSAcRSi~GG~v~W~~g~~~dgsds~A~~v~~~~~~p~l~~iilvv~~~~K~vsST~gm~~~v~tS~~~~~~~~~~a~~ 252 (416)
T 1fi4_A 173 SGSACRSLFGGYVAWEMGKAEDGHDSMAVQIADSSDWPQMKACVLVVSDIKKDVSSTQGMQLTVATSELFKERIEHVVPK 252 (416)
T ss_dssp HGGGGGGGSSSEEEEECCSCTTCTTCEEEEEECGGGSTTEEEEEEEECCCSCCCCHHHHHHHHHHHCSHHHHHHHTHHHH
T ss_pred CCCHHHHHHCCEEEECCCCCCCCCCCEEEECCCCCCCCCCEEEEEEECCCCCCCCCCCCHHCCCCCCCCHHHHHHHHHHH
T ss_conf 63445564088778437888778763478715655664400389983466555656310111545575789999875066
Q ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHH--CCCEEEEEECCCCEEEEEEC
Q ss_conf 0999999998099999999999999989998703899568657889999999999742--89619999777981799955
Q gi|254781016|r 234 DLAHIKQAIIDQDFIKLGEVAEKNALKMHATMIAASPPLLYWQKETIQGMERVWDARQ--QSIPIYFTLDAGPNLKLLFT 311 (355)
Q Consensus 234 ~~~~~~~ai~~~Df~~l~~i~e~dal~mHa~~~~s~P~~~Y~~~~t~~ii~~v~~~R~--~g~~v~fT~DAGPNv~il~~ 311 (355)
++.+|++||+++||+.|++++|.|+++|||+||++.|||+||+|+|+++|++|+++|+ ++.++||||||||||||||+
T Consensus 253 ~~~~m~~Ai~~~Df~~~~ei~e~ds~~mHa~~l~s~Ppi~Y~~~~s~~ii~~v~~~r~~~~~~~~~yT~DAGPNv~il~~ 332 (416)
T 1fi4_A 253 RFEVMRKAIVEKDFATFAKETMMDSNSFHATCLDSFPPIFYMNDTSKRIISWCHTINQFYGETIVAYTFDAGPNAVLYYL 332 (416)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSCCCCCCHHHHHHHHHHHHHHHHHTSCCEEEEECSSSCEEEEEE
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCEEEEEC
T ss_conf 89999999983899999999999899999998636998475684279999999999986389728999678877799974
Q ss_pred HHHHHHHHHHHHHCC
Q ss_conf 898999999976321
Q gi|254781016|r 312 HKIEETIKQFFPEIT 326 (355)
Q Consensus 312 ~~~~~~i~~~l~~i~ 326 (355)
++++++|.++|.++.
T Consensus 333 ~~~~~~v~~~l~~~f 347 (416)
T 1fi4_A 333 AENESKLFAFIYKLF 347 (416)
T ss_dssp GGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHC
T ss_conf 766999999999976