HHsearch results for GI: 254781016 and protein with PDBid: 1fi4_A

>1fi4_A Mevalonate 5-diphosphate decarboxylase; mixed alpha/beta structure, ATP binding, cholesterol biosynthesis, structural genomics, PSI; 2.27A {Saccharomyces cerevisiae} SCOP: d.14.1.5 d.58.26.2
Probab=100.00  E-value=0  Score=725.42  Aligned_cols=316  Identities=32%  Similarity=0.543  Sum_probs=294.3

Q ss_pred             HHHHCCCCCCCCCEEEECCCCEEEEECCCCCCHHHCCCCCCCEEEEE--CCCCEEEEEEECCC-CCCEEEECCEECCCCC
Q ss_conf             87403467877637897488424881167767011757898434681--27810799997178-8857998787256652
Q gi|254781016|r   11 RYIGECNPKINEKSSAFLPSNIALCKYWGKRDSKLNLPLNNSLSLSL--GHLGTITHITVIDS-DADCIILNGQKISSQS   87 (355)
Q Consensus        11 ~~~~~~~~~~~~~~ta~ap~NIALIKYWGK~d~~l~lP~n~SiS~TL--~~~~T~T~v~~~~~-~~d~~~lnG~~~~~~~   87 (355)
                      -|+...+.....++||+||+||||||||||||+++|||+|||||+||  |.++|+|+|++++. ++|++||||++.+...
T Consensus        13 ~~~~~~~~~~~~~~t~~AP~NIAlIKYWGKrd~~l~lP~n~SiS~TL~~d~~~T~Ttv~~s~~~~~d~~~lNG~~~~~~~   92 (416)
T 1fi4_A           13 GLVPRGSHMTVYTASVTAPVNIATLKYWGKRDTKLNLPTNSSISVTLSQDDLRTLTSAATAPEFERDTLWLNGEPHSIDN   92 (416)
T ss_dssp             ----------CEEEEEEECCEEEEECCCCEEETTTTEESSCEEEEEBCTTTSCEEEEEEECTTCCSCBCTTTCCBSSSSS
T ss_pred             CCCCCCCCEEEEEEEEEEECCEEEEECCCCCCCCCCCCCCCCEEEEECCCCCEEEEEEEECCCCCCCEEEECCEECCCCC
T ss_conf             86637870389999997534332640157668767899998147893699987789999788887787999998657630


Q ss_pred             HHHHHHHHHHHHHHHH-----------CCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHC
Q ss_conf             0689999997421676-----------19439999850233211012322479999999999818899988999886521
Q gi|254781016|r   88 SFFKKTTQFCDLFRQF-----------SKVYFLIETSNNIPTKAGLASSASGFAALTLALFRIYSIPEKSESLSRVARLG  156 (355)
Q Consensus        88 ~~~~ri~~~l~~~r~~-----------~~~~~~I~S~N~fPtaaGLASSASgfAALa~Al~~~~~~~~~~~~lS~lARlG  156 (355)
                      ++.+++.++++.++..           .+++++|+|+|||||||||||||||||||+.|++++++++++.+++|++||+|
T Consensus        93 ~r~~~~l~~ir~l~~~~~~~~~~~~~~~~~~l~I~S~NnfPtaaGLASSASg~AAl~~al~~l~~~~l~~~elS~lAR~G  172 (416)
T 1fi4_A           93 ERTQNCLRDLRQLRKEMESKDASLPTLSQWKLHIVSENNFPTAAGLASSAAGFAALVSAIAKLYQLPQSTSEISRIARKG  172 (416)
T ss_dssp             SSHHHHHHHHHHHHHHHHTTCTTSCCGGGSCEEEEEEECCCTTSCCCHHHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHC
T ss_conf             88999999999999875401224653346228999956884224688899999999999999856778889999998610


Q ss_pred             CCCCHHHHCCCCHHCCCCCCCCCCCEEEEECC--CCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHCHHHHHHHHH-HHH
Q ss_conf             35303431056200257898765441310156--668642158999728766752105679887618568999973-055
Q gi|254781016|r  157 SGSACRSFYRGFCEWICGTDQNGMDSFAVPFN--NQWPDLRIGLLKIIDREKKIGSREAMEITRHHSPFFTQWTQQ-IST  233 (355)
Q Consensus       157 SGSA~RSi~GG~v~W~~g~~~~~sds~a~~~~--~~~~dl~~~i~iv~~~~K~vsSt~gm~~~v~tSp~y~~r~~~-~~~  233 (355)
                      |||||||+|||||+|+.|...|++|++++++.  .|||+|+++|++|++++|+|+||+||+++++|||+|+.|++. ++.
T Consensus       173 SGSAcRSi~GG~v~W~~g~~~dgsds~A~~v~~~~~~p~l~~iilvv~~~~K~vsST~gm~~~v~tS~~~~~~~~~~a~~  252 (416)
T 1fi4_A          173 SGSACRSLFGGYVAWEMGKAEDGHDSMAVQIADSSDWPQMKACVLVVSDIKKDVSSTQGMQLTVATSELFKERIEHVVPK  252 (416)
T ss_dssp             HGGGGGGGSSSEEEEECCSCTTCTTCEEEEEECGGGSTTEEEEEEEECCCSCCCCHHHHHHHHHHHCSHHHHHHHTHHHH
T ss_pred             CCCHHHHHHCCEEEECCCCCCCCCCCEEEECCCCCCCCCCEEEEEEECCCCCCCCCCCCHHCCCCCCCCHHHHHHHHHHH
T ss_conf             63445564088778437888778763478715655664400389983466555656310111545575789999875066


Q ss_pred             HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHH--CCCEEEEEECCCCEEEEEEC
Q ss_conf             0999999998099999999999999989998703899568657889999999999742--89619999777981799955
Q gi|254781016|r  234 DLAHIKQAIIDQDFIKLGEVAEKNALKMHATMIAASPPLLYWQKETIQGMERVWDARQ--QSIPIYFTLDAGPNLKLLFT  311 (355)
Q Consensus       234 ~~~~~~~ai~~~Df~~l~~i~e~dal~mHa~~~~s~P~~~Y~~~~t~~ii~~v~~~R~--~g~~v~fT~DAGPNv~il~~  311 (355)
                      ++.+|++||+++||+.|++++|.|+++|||+||++.|||+||+|+|+++|++|+++|+  ++.++||||||||||||||+
T Consensus       253 ~~~~m~~Ai~~~Df~~~~ei~e~ds~~mHa~~l~s~Ppi~Y~~~~s~~ii~~v~~~r~~~~~~~~~yT~DAGPNv~il~~  332 (416)
T 1fi4_A          253 RFEVMRKAIVEKDFATFAKETMMDSNSFHATCLDSFPPIFYMNDTSKRIISWCHTINQFYGETIVAYTFDAGPNAVLYYL  332 (416)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSCCCCCCHHHHHHHHHHHHHHHHHTSCCEEEEECSSSCEEEEEE
T ss_pred             HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCEEEEEC
T ss_conf             89999999983899999999999899999998636998475684279999999999986389728999678877799974


Q ss_pred             HHHHHHHHHHHHHCC
Q ss_conf             898999999976321
Q gi|254781016|r  312 HKIEETIKQFFPEIT  326 (355)
Q Consensus       312 ~~~~~~i~~~l~~i~  326 (355)
                      ++++++|.++|.++.
T Consensus       333 ~~~~~~v~~~l~~~f  347 (416)
T 1fi4_A          333 AENESKLFAFIYKLF  347 (416)
T ss_dssp             GGGHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHC
T ss_conf             766999999999976