HHsearch results for GI: 254781016 and protein with PDBid: 1kkh_A
>1kkh_A Mevalonate kinase; mixed beta sheet, phosphate-binding loop, beta-alpha-beta, transferase; 2.40A {Methanocaldococcus jannaschii} SCOP: d.14.1.5 d.58.26.3 PDB: 1vis_A
Probab=99.49 E-value=3.2e-11 Score=97.32 Aligned_cols=274 Identities=18% Similarity=0.167 Sum_probs=153.2
Q ss_pred CCEEEECCCCEEEEECCCCCCHHHCCCCCCCEEEEECCCCEEEEEEECCCCCCEEEECCE-----------EC-CCCC--
Q ss_conf 637897488424881167767011757898434681278107999971788857998787-----------25-6652--
Q gi|254781016|r 22 EKSSAFLPSNIALCKYWGKRDSKLNLPLNNSLSLSLGHLGTITHITVIDSDADCIILNGQ-----------KI-SSQS-- 87 (355)
Q Consensus 22 ~~~ta~ap~NIALIKYWGK~d~~l~lP~n~SiS~TL~~~~T~T~v~~~~~~~d~~~lnG~-----------~~-~~~~-- 87 (355)
.+-.+.||-.|=|. |-+-. + ==.++|++++| .+++.+++ +.+++++.++.. .. ...+
T Consensus 4 ~~~~v~aPgki~L~---GEh~v-~--~G~~al~~aI~-~~~~v~i~--~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~ 74 (317)
T 1kkh_A 4 SHMIIETPSKVILF---GEHAV-V--YGYRAISMAID-LTSTIEIK--ETQEDEIILNLNDLNKSLGLNLNEIKNINPNN 74 (317)
T ss_dssp CCEEEEEEEEEEEE---CTTGG-G--GTCCEEEEEEE-EEEEEEEE--ECCSSEEEEEETTTTEEEEEETTTGGGCCGGG
T ss_pred CEEEEEEEEEEEEE---CCCCE-E--CCCCEEEEEEC-CEEEEEEE--ECCCCEEEEEECCCCCCEEEEHHHCCCCCCCC
T ss_conf 83999931099998---16713-4--79988999962-65999999--98899799997478862688601132358554
Q ss_pred -HHHHHH----HHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHC------
Q ss_conf -068999----999742167619439999850233211012322479999999999818899988999886521------
Q gi|254781016|r 88 -SFFKKT----TQFCDLFRQFSKVYFLIETSNNIPTKAGLASSASGFAALTLALFRIYSIPEKSESLSRVARLG------ 156 (355)
Q Consensus 88 -~~~~ri----~~~l~~~r~~~~~~~~I~S~N~fPtaaGLASSASgfAALa~Al~~~~~~~~~~~~lS~lARlG------ 156 (355)
.-...+ ...++.+.......+.|....++|.++||+||||..+|+..|++++++++++..++..+|...
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~g~~i~i~s~iP~g~GLGSSsA~~va~~~al~~~~~~~l~~~el~~la~~~E~~~~~ 154 (317)
T 1kkh_A 75 FGDFKYCLCAIKNTLDYLNIEPKTGFKINISSKIPISCGLGSSASITIGTIKAVSGFYNKELKDDEIAKLGYMVEKEIQG 154 (317)
T ss_dssp SGGGHHHHHHHHHHHHHTTCCCCSCEEEEEEECSCSSSSSCHHHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHSS
T ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCC
T ss_conf 42289999999999998287889866999967898877874568999999887644410158878877666889862288
Q ss_pred --CC-CCHHHHCCCCHHCCCCCCCCCCCEEEEECCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHH
Q ss_conf --35-303431056200257898765441310156668642158999728766752105679887618568999973055
Q gi|254781016|r 157 --SG-SACRSFYRGFCEWICGTDQNGMDSFAVPFNNQWPDLRIGLLKIIDREKKIGSREAMEITRHHSPFFTQWTQQIST 233 (355)
Q Consensus 157 --SG-SA~RSi~GG~v~W~~g~~~~~sds~a~~~~~~~~dl~~~i~iv~~~~K~vsSt~gm~~~v~tSp~y~~r~~~~~~ 233 (355)
|| ...-+.|||++........ .........+++....++.. ... . .++..+...+....-....+....
T Consensus 155 ~~s~~D~~~~~~gg~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~-~~~-~-~~t~~~~~~~~~~~~~~~~~~~i~- 226 (317)
T 1kkh_A 155 KASITDTSTITYKGILEIKNNKFR----KIKGEFEEFLKNCKFLIVYA-EKR-K-KKTAELVNEVAKIENKDEIFKEID- 226 (317)
T ss_dssp SCCSHHHHHHHHCSEEEESSSCEE----EECHHHHHHHHTCCEEEEEE-ECC-C-SCHHHHHHHHHTCTTHHHHHHHHH-
T ss_pred CCCCCCHHHHCCCCEEEEECCCCE----EECCCHHHCCHHHHHHHHHH-CCC-C-CCHHHHHHHHHHHHHHHHHHHHHH-
T ss_conf 888763034305865996179613----61120200111122220020-674-3-142989998887766778999988-
Q ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHHCCCEEEEEECCC--CEEEEEEC
Q ss_conf 0999999998099999999999999989998703899568657889999999999742896199997779--81799955
Q gi|254781016|r 234 DLAHIKQAIIDQDFIKLGEVAEKNALKMHATMIAASPPLLYWQKETIQGMERVWDARQQSIPIYFTLDAG--PNLKLLFT 311 (355)
Q Consensus 234 ~~~~~~~ai~~~Df~~l~~i~e~dal~mHa~~~~s~P~~~Y~~~~t~~ii~~v~~~R~~g~~v~fT~DAG--PNv~il~~ 311 (355)
..+.+|++.+|++.|++++..+...+..+. .-+|+--++++. .++.|..+-.| .|| +.+..|+.
T Consensus 227 --~~~~eal~~~d~~~l~~~m~~~~~~~~~~~--------i~~~~l~~l~~~---~~~~g~~ak~s-GaG~Gg~~~~~~~ 292 (317)
T 1kkh_A 227 --KVIDEALKIKNKEDFGKLMTKNHELLKKLN--------ISTPKLDRIVDI---GNRFGFGAKLT-GAGGGGCVIILVN 292 (317)
T ss_dssp --HHHHHHHHCCSHHHHHHHHHHHHHHHHTTT--------CCCHHHHHHHHH---HHHHSSEEEEC-SSSSSEEEEEECC
T ss_pred --HHHHHHHHHCCHHHHHHHHHHHHHHHHHHC--------CCCHHHHHHHHH---HHHCCCEEEEE-CCCCCCEEEEEEC
T ss_conf --878887650005789999999799998728--------998899999999---98379589980-7886388999988
Q ss_pred HHHHHHHHHHHHHCC
Q ss_conf 898999999976321
Q gi|254781016|r 312 HKIEETIKQFFPEIT 326 (355)
Q Consensus 312 ~~~~~~i~~~l~~i~ 326 (355)
+++.+.+.+.+.+.+
T Consensus 293 ~~~~~~~~~~~~~~~ 307 (317)
T 1kkh_A 293 EEKEKELLKELNKED 307 (317)
T ss_dssp GGGHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHHCC
T ss_conf 157999999999749