HHsearch results for GI: 254781016 and protein with PDBid: 1kvk_A
>1kvk_A MK, mevalonate kinase; RMK, ATP, GHMP, transferase; HET: ATP; 2.40A {Rattus norvegicus} SCOP: d.14.1.5 d.58.26.3 PDB: 2r42_A* 2r3v_A
Probab=98.99 E-value=5.6e-07 Score=67.63 Aligned_cols=194 Identities=18% Similarity=0.163 Sum_probs=109.5
Q ss_pred EEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC---------------HHHHHHHHHH------CCCCC---HH
Q ss_conf 399998502332110123224799999999998188999---------------8899988652------13530---34
Q gi|254781016|r 107 YFLIETSNNIPTKAGLASSASGFAALTLALFRIYSIPEK---------------SESLSRVARL------GSGSA---CR 162 (355)
Q Consensus 107 ~~~I~S~N~fPtaaGLASSASgfAALa~Al~~~~~~~~~---------------~~~lS~lARl------GSGSA---~R 162 (355)
.+.|....+.|.++||+||||..+|+..|+..+++.... .+++..+|.. |.+|+ .-
T Consensus 128 g~~i~i~S~iP~g~GLgSSaA~~va~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~la~~~E~~~~g~~~G~d~~~ 207 (395)
T 1kvk_A 128 SLDIMVWSELPPGAGLGSSAAYSVCVAAALLTACEEVTNPLKDRGSIGSWPEEDLKSINKWAYEGERVIHGNPSGVDNSV 207 (395)
T ss_dssp CEEEEEEESSCTTSSSCHHHHHHHHHHHHHHHHTTSSCCGGGGCCSEECCCHHHHHHHHHHHHHHHHHHHSSCCSHHHHH
T ss_pred CEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHH
T ss_conf 86999964477324765128999999999999845444431000000111104799999999999988658885035778
Q ss_pred HHCCCCHHCCCCCCCCCCCEEEEECCCCCCCCEEEEEEECCCCCCCCCCHHHHHHH-----HHCHHHHHHHHHHHHHHHH
Q ss_conf 31056200257898765441310156668642158999728766752105679887-----6185689999730550999
Q gi|254781016|r 163 SFYRGFCEWICGTDQNGMDSFAVPFNNQWPDLRIGLLKIIDREKKIGSREAMEITR-----HHSPFFTQWTQQISTDLAH 237 (355)
Q Consensus 163 Si~GG~v~W~~g~~~~~sds~a~~~~~~~~dl~~~i~iv~~~~K~vsSt~gm~~~v-----~tSp~y~~r~~~~~~~~~~ 237 (355)
+.+||+..|..... ......+++. +++++.+.+.. +..+...+ +....+..-.+....-..+
T Consensus 208 ~~~g~~~~~~~~~~---------~~~~~~~~~~--l~l~~t~~~~~--t~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~ 274 (395)
T 1kvk_A 208 STWGGALRYQQGKM---------SSLKRLPALQ--ILLTNTKVPRS--TKALVAGVRSRLIKFPEIMAPLLTSIDAISLE 274 (395)
T ss_dssp HHHCSEEEESSSCE---------EECSCCCCEE--EEEEECCCCCC--HHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHH
T ss_pred HHCCCEEEEECCCC---------CCCCCCCCCC--EEEECCCCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 75588378512443---------2345676520--57832687650--27889999999986466799999999999999
Q ss_pred HHHHH-------HHCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHHCCCEEEEEECCCC--EEEE
Q ss_conf 99999-------80999999999999999899987038995686578899999999997428961999977798--1799
Q gi|254781016|r 238 IKQAI-------IDQDFIKLGEVAEKNALKMHATMIAASPPLLYWQKETIQGMERVWDARQQSIPIYFTLDAGP--NLKL 308 (355)
Q Consensus 238 ~~~ai-------~~~Df~~l~~i~e~dal~mHa~~~~s~P~~~Y~~~~t~~ii~~v~~~R~~g~~v~fT~DAGP--Nv~i 308 (355)
+..++ ..+|+..+|++...+-..+..+ .. -+|+--++++ ..++.|..+-.| .||+ .+..
T Consensus 275 ~~~~l~~~~~~~~~~d~~~lg~lm~~~~~~l~~l--~v------s~peld~l~~---~a~~~g~gakls-GAG~GG~~ia 342 (395)
T 1kvk_A 275 CERVLGEMAAAPVPEQYLVLEELMDMNQHHLNAL--GV------GHASLDQLCQ---VTAAHGLHSKLT-GAGGGGCGIT 342 (395)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHH--TC------CCHHHHHHHH---HHHHTTCEEEEC-SSCSSSEEEE
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHC--CC------CCHHHHHHHH---HHHHCCCEEEEE-CCCCCCEEEE
T ss_conf 9999998877665113455899999809988762--89------9899999999---998579689983-6677568999
Q ss_pred EECHHHHHH----HHHHHHHC
Q ss_conf 955898999----99997632
Q gi|254781016|r 309 LFTHKIEET----IKQFFPEI 325 (355)
Q Consensus 309 l~~~~~~~~----i~~~l~~i 325 (355)
|++.+..+. +++.+.+.
T Consensus 343 l~~~~~~~~~~~~~~~~~~~~ 363 (395)
T 1kvk_A 343 LLKPGLERAKVEAAKQALTGC 363 (395)
T ss_dssp EECTTCCHHHHHHHHHHHHHT
T ss_pred EECCCCHHHHHHHHHHHHHHC
T ss_conf 977850499999999999976