HHsearch results for GI: 254781016 and protein with PDBid: 2v8p_A
>2v8p_A 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; nucleotide-binding, isoprene biosynthesis, transferase, ATP-binding, non-mevalonate; HET: CDP ADP; 2.1A {Aquifex aeolicus} PDB: 2v2v_A* 2v2q_A* 2v34_A* 2v2z_A* 2vf3_A*
Probab=99.26 E-value=7e-10 Score=87.94 Aligned_cols=253 Identities=15% Similarity=0.044 Sum_probs=143.2
Q ss_pred CCCCEEEECCCCEEEEECCCCCCHHHCCCCCCCEEEEECCCCEEEEEEECCCCCCEEEECCEECCCCCHHHHHHHHHHHH
Q ss_conf 77637897488424881167767011757898434681278107999971788857998787256652068999999742
Q gi|254781016|r 20 INEKSSAFLPSNIALCKYWGKRDSKLNLPLNNSLSLSLGHLGTITHITVIDSDADCIILNGQKISSQSSFFKKTTQFCDL 99 (355)
Q Consensus 20 ~~~~~ta~ap~NIALIKYWGK~d~~l~lP~n~SiS~TL~~~~T~T~v~~~~~~~d~~~lnG~~~~~~~~~~~ri~~~l~~ 99 (355)
..-+..|-|-.|+.| +=.|||+.-+ -.-.|+-.++| ++-+-+++ ++ ...+.-+. ..+.++. -+.+.++.
T Consensus 3 ~mi~~~apAKiNL~L-~i~~kr~dGy--H~i~s~~~~i~-l~D~i~i~--~~-~~~~~~~~-~~~~~~N---li~ka~~~ 71 (271)
T 2v8p_A 3 HMIKVLSPAKINLGL-WVLGRLPSGY--HEILTLYQEIP-FYDEIYIR--EG-VLRVETNI-GIPQEEN---LVYKGLRE 71 (271)
T ss_dssp CCEEEEEEEEEEEEE-EEEEECTTSC--EEEEEEEEEEE-EEEEEEEE--ES-SCEEEESS-CCCTTTC---HHHHHHHH
T ss_pred CEEEEEEEEEEEEEE-EECCCCCCCC--CEEEEEEEEEC-CCCEEEEE--EC-CCEEECCC-CCCCCHH---HHHHHHHH
T ss_conf 519998416897545-5178589997--72578999926-87399999--68-70776888-9996311---99999999
Q ss_pred HHHHCCC--EEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHCCCCHHCCCCCCC
Q ss_conf 1676194--39999850233211012322479999999999818899988999886521353034310562002578987
Q gi|254781016|r 100 FRQFSKV--YFLIETSNNIPTKAGLASSASGFAALTLALFRIYSIPEKSESLSRVARLGSGSACRSFYRGFCEWICGTDQ 177 (355)
Q Consensus 100 ~r~~~~~--~~~I~S~N~fPtaaGLASSASgfAALa~Al~~~~~~~~~~~~lS~lARlGSGSA~RSi~GG~v~W~~g~~~ 177 (355)
+++..+. .++|.-++++|.++||+||||..||...+++++++++++.+++-.+|....+-+.-.++||.+. ..|.++
T Consensus 72 ~~~~~~~~~~~~I~i~K~IP~~~GLGggSs~aaa~l~~ln~l~~~~ls~~el~~la~~ig~dvp~fl~g~~~~-~~g~Ge 150 (271)
T 2v8p_A 72 FERITGIEINYSIFIQKNIPPGAGLGGGSSNLAVVLKKVNELLGSPLSEEELRELVGSISADAPFFLLGKSAI-GRGKGE 150 (271)
T ss_dssp HHHHHCCCCCEEEEEECCSCTTSSSCHHHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHCTTTGGGGTCSEEE-EETTTT
T ss_pred HHHHHCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCCCCCC-CCCCCC
T ss_conf 7797599987489997699887877743278999999999850677423667765302478878433687600-048853
Q ss_pred CCCCEEEEECCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
Q ss_conf 65441310156668642158999728766752105679887618568999973055099999999809999999999999
Q gi|254781016|r 178 NGMDSFAVPFNNQWPDLRIGLLKIIDREKKIGSREAMEITRHHSPFFTQWTQQISTDLAHIKQAIIDQDFIKLGEVAEKN 257 (355)
Q Consensus 178 ~~sds~a~~~~~~~~dl~~~i~iv~~~~K~vsSt~gm~~~v~tSp~y~~r~~~~~~~~~~~~~ai~~~Df~~l~~i~e~d 257 (355)
....++.. +++.+++++ .+. ..||.-+-.......+. ..........++..+|++.+..--|.-
T Consensus 151 ---~i~~~~~~---~~~~~vlv~--P~~--~~sT~~a~~~l~~~~~~------~~~~~~~~~~~l~~~~~~~~~n~l~~~ 214 (271)
T 2v8p_A 151 ---VLEPVETE---ISGKITLVI--PQV--SSSTGRVYSSLREEHFV------TPEYAEEKIQRIISGEVEEIENVLGDI 214 (271)
T ss_dssp ---EEEECCCC---CCSEEEEEE--CSS--CCCHHHHHHTCCTTSCC------CHHHHHHHHHHHHTTCGGGCCBHHHHH
T ss_pred ---EEEEEEEC---CCCCEEEEE--CCC--CCCCHHHHHHHHHHHCC------CCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf ---79997615---775279981--565--77517899765133034------520058899988753189999888889
Q ss_pred HHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEEEECHHH-HHHH
Q ss_conf 998999870389956865788999999999974289619999777981799955898-9999
Q gi|254781016|r 258 ALKMHATMIAASPPLLYWQKETIQGMERVWDARQQSIPIYFTLDAGPNLKLLFTHKI-EETI 318 (355)
Q Consensus 258 al~mHa~~~~s~P~~~Y~~~~t~~ii~~v~~~R~~g~~v~fT~DAGPNv~il~~~~~-~~~i 318 (355)
+.++ .|+-.++.+ .+++.+..++.| .+||.|+.||..++ ++.+
T Consensus 215 ~~~l--------------~P~i~~i~~---~l~~~~~~~~lS-GSGstvfal~~~~~~~~~a 258 (271)
T 2v8p_A 215 AREL--------------YPEINEVYR---FVEYLGFKPFVS-GSGSTVYFFGGASEELKKA 258 (271)
T ss_dssp HHHH--------------CHHHHHHHH---HHHHTTCCCEEC-TTSSCEEESSCCCHHHHHH
T ss_pred HHHH--------------CHHHHHHHH---HHHHCCCCEEEE-CCCHHHEEEECCHHHHHHH
T ss_conf 9986--------------909999999---998389988997-8443216898999999998