HHsearch results for GI: 254781016 and protein with PDBid: 3f0n_A
>3f0n_A Mevalonate pyrophosphate decarboxylase; cholesterol biosynthesis, lipid synthesis, lyase, steroid biosynthesis, sterol biosynthesis; 1.90A {Mus musculus} PDB: 3d4j_A
Probab=100.00 E-value=0 Score=703.48 Aligned_cols=299 Identities=32% Similarity=0.531 Sum_probs=277.0
Q ss_pred CCCEEEECCCCEEEEECCCCCCHHHCCCCCCCEEEEE--CCCCEEEEEEECCC-CCCEEEECCEECCCCCHHHHHHHHHH
Q ss_conf 7637897488424881167767011757898434681--27810799997178-88579987872566520689999997
Q gi|254781016|r 21 NEKSSAFLPSNIALCKYWGKRDSKLNLPLNNSLSLSL--GHLGTITHITVIDS-DADCIILNGQKISSQSSFFKKTTQFC 97 (355)
Q Consensus 21 ~~~~ta~ap~NIALIKYWGK~d~~l~lP~n~SiS~TL--~~~~T~T~v~~~~~-~~d~~~lnG~~~~~~~~~~~ri~~~l 97 (355)
....||+||+||||||||||||+++|||+|||||+|| +.++|+|+|+++++ ++|++||||++.+..+ +|+.+++
T Consensus 21 ~~~vT~~Ap~NIAlIKYWGKrD~~l~lP~N~SiS~TL~~~~~~T~Ttv~~s~~~~~D~~~lNGk~~~~~~---~Ri~~~l 97 (414)
T 3f0n_A 21 DLMVTCTAPVNIAVIKYWGKRDEALILPINSSLSVTLHQDQLKTTTTVAISKDFTEDRIWLNGREEDVGQ---PRLQACL 97 (414)
T ss_dssp CEEEEEEECCEEEEECCCCEEETTTTEESSCEEEEEBCTTTSCEEEEEEECTTCCSCEEEETTEEECTTC---HHHHHHH
T ss_pred CEEEEEECCCCEEEEECCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEEECCCCCCCEEEECCEECCCCC---HHHHHHH
T ss_conf 6389998236752541257568877899998057980588867899999788887878999999777635---7899999
Q ss_pred HHHHHHC----------------CCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCH
Q ss_conf 4216761----------------943999985023321101232247999999999981889998899988652135303
Q gi|254781016|r 98 DLFRQFS----------------KVYFLIETSNNIPTKAGLASSASGFAALTLALFRIYSIPEKSESLSRVARLGSGSAC 161 (355)
Q Consensus 98 ~~~r~~~----------------~~~~~I~S~N~fPtaaGLASSASgfAALa~Al~~~~~~~~~~~~lS~lARlGSGSA~ 161 (355)
+.+|.+. ..+++|+|+|||||+|||||||||||||+.|++++++++ .++|+|||+||||||
T Consensus 98 ~~ir~~~~~~~~~~~~~~~p~~~~~~~~I~S~NnfPtaAGLASSASg~aALa~al~~l~~l~---~~lS~iARlGSGSA~ 174 (414)
T 3f0n_A 98 REIRRLARKRRSTEDGDTLPLSLSYKVHVASVNNFPTAAGLASSAAGYACLAYTLAQVYGVE---GDLSEVARRGSGSAC 174 (414)
T ss_dssp HHHHHHHHC-------CCHHHHHHSCEEEEEEECCCGGGCCCHHHHHHHHHHHHHHHHHTCC---SCCHHHHHHHCGGGG
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCC---HHHHHHHHHHCCCCC
T ss_conf 99999987631112233465455642699851476166678887999999999999885353---359999986078853
Q ss_pred HHHCCCCHHCCCCCCCCCCCEEEEEC--CCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHCHHHHHHHHH-HHHHHHHH
Q ss_conf 43105620025789876544131015--6668642158999728766752105679887618568999973-05509999
Q gi|254781016|r 162 RSFYRGFCEWICGTDQNGMDSFAVPF--NNQWPDLRIGLLKIIDREKKIGSREAMEITRHHSPFFTQWTQQ-ISTDLAHI 238 (355)
Q Consensus 162 RSi~GG~v~W~~g~~~~~sds~a~~~--~~~~~dl~~~i~iv~~~~K~vsSt~gm~~~v~tSp~y~~r~~~-~~~~~~~~ 238 (355)
||+|||||.|+.|...|++|++++++ ..|||+++++|++|++++|+|+||+||+.+++|||||+.|+++ ++.++.+|
T Consensus 175 RSi~GGfv~W~~g~~~dgsds~a~~i~~~~~~p~l~~iilivd~~~K~vsSt~gm~~~~~tSp~~~~r~~~~~~~~i~~m 254 (414)
T 3f0n_A 175 RSLYGGFVEWQMGEQADGKDSIARQIAPEWHWPQLRILILVVSADKKQTGSTVGMQTSVETSTLLKFRAESVVPERMKEM 254 (414)
T ss_dssp GGGSSSEEEECCCSCTTCTTCCEEEEECTTSCTTEEEEEEEESCCC-CCCHHHHHHHHHHHCHHHHHHHHHTHHHHHHHH
T ss_pred CCCCCCEEEECCCCCCCCCCCCCEECCCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf 10316645604678878876530334664456510069998246556677678776401036479999998658999999
Q ss_pred HHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHH--CCCEEEEEECCCCEEEEEECHHHHH
Q ss_conf 99998099999999999999989998703899568657889999999999742--8961999977798179995589899
Q gi|254781016|r 239 KQAIIDQDFIKLGEVAEKNALKMHATMIAASPPLLYWQKETIQGMERVWDARQ--QSIPIYFTLDAGPNLKLLFTHKIEE 316 (355)
Q Consensus 239 ~~ai~~~Df~~l~~i~e~dal~mHa~~~~s~P~~~Y~~~~t~~ii~~v~~~R~--~g~~v~fT~DAGPNv~il~~~~~~~ 316 (355)
++||+++||++||+++|+|+++|||+||+++|||+||+|.|+++|+.|+++|+ ++.+|||||||||||||||++++++
T Consensus 255 ~~Ai~~~Df~~fgel~e~dsl~mHA~~l~s~Pp~~Y~~~~s~~ii~~V~~~r~~~~~~~v~~T~DAGPNv~il~~~~~~~ 334 (414)
T 3f0n_A 255 TRCIQEQDFQGFAQLTMKDSNQFHATCLDTFPPISYLNDTSRRIIQLVHRFNTHHGQTKVAYTFDAGPNAVIFTLEDTVA 334 (414)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSCCCCCCHHHHHHHHHHHHHHHHHTSCCEEEECCSSSCEEEEEEHHHHH
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCEEEEEECCCHH
T ss_conf 99999599999999999999999999854799858767648999999999999669976899978887879997325499
Q ss_pred HHHHHHHHC
Q ss_conf 999997632
Q gi|254781016|r 317 TIKQFFPEI 325 (355)
Q Consensus 317 ~i~~~l~~i 325 (355)
+|.++|.+.
T Consensus 335 ~v~~~l~~~ 343 (414)
T 3f0n_A 335 EFVAAVRHS 343 (414)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
T ss_conf 999999987