HHsearch results for GI: 254781016 and protein with PDBid: 3k17_A
>3k17_A LIN0012 protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics, NEW YORK SGX research center for structural genomics; HET: PGE; 2.10A {Listeria innocua}
Probab=99.49 E-value=4.1e-10 Score=89.53 Aligned_cols=292 Identities=14% Similarity=0.111 Sum_probs=166.8
Q ss_pred CCCCEEEECCCCEEEEECCCCCCHHHCC-CCCCCEEEEECCCCEEEEEEECCCCCCEEEECCEE-----------CCCC-
Q ss_conf 7763789748842488116776701175-78984346812781079999717888579987872-----------5665-
Q gi|254781016|r 20 INEKSSAFLPSNIALCKYWGKRDSKLNL-PLNNSLSLSLGHLGTITHITVIDSDADCIILNGQK-----------ISSQ- 86 (355)
Q Consensus 20 ~~~~~ta~ap~NIALIKYWGK~d~~l~l-P~n~SiS~TL~~~~T~T~v~~~~~~~d~~~lnG~~-----------~~~~- 86 (355)
...+..++||-.|-|+ |-+ ..+ |-.+.|++++| .+++.+++ +.+++++.+.... ....
T Consensus 3 ~~~~i~v~aPGKv~L~---GEh---~v~~~G~~al~~AI~-~~~~v~i~--~~~~~~i~i~~~~~~~~~~~~~~~~~~~~ 73 (365)
T 3k17_A 3 LKNKLQVKIPGKLYVA---GEY---AVVESGHTAILTAVN-RYITLTLE--DSERNELWIPHYENPVSWPIGGELKPDGE 73 (365)
T ss_dssp --CCEEEEEEEEEEEE---CTT---GGGSTTCEEEEEEEE-EEEEEEEE--ECSSCEEECTTCSSCBCCCTTSCCCCSCG
T ss_pred CCCEEEEEEEEEEEEE---ECC---EEECCCCEEEEEEEC-CEEEEEEE--ECCCCEEEEEECCCCEEEEECCCCCCCCC
T ss_conf 8887999996599999---868---981599669999981-50999999--98998799996688705885365566665
Q ss_pred -CHHHHHHHHHHHHHHHHCC---CEEEEEEECCCC----CCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH---
Q ss_conf -2068999999742167619---439999850233----21101232247999999999981889998899988652---
Q gi|254781016|r 87 -SSFFKKTTQFCDLFRQFSK---VYFLIETSNNIP----TKAGLASSASGFAALTLALFRIYSIPEKSESLSRVARL--- 155 (355)
Q Consensus 87 -~~~~~ri~~~l~~~r~~~~---~~~~I~S~N~fP----taaGLASSASgfAALa~Al~~~~~~~~~~~~lS~lARl--- 155 (355)
..+.......+..+....+ ..+.|...-++| .++||+||||-..|++.|+..+++..++..++..+|+.
T Consensus 74 ~~~~~~~~~~~~~~~l~~~~~~~~g~~i~i~s~ip~~~g~gsGLgSSaA~~va~~~al~~~~~~~~~~~~l~~~a~~~E~ 153 (365)
T 3k17_A 74 HWTFTAEAINIATTFLKSEGIELTPVKMVIETELIDQSGAKYGLGSSAAATVAVINALMTKFYPEISMLKKFKLAALSHL 153 (365)
T ss_dssp GGHHHHHHHHHHHHHHHHTTCCCCCEEEEEEESSBCTTSCBCSSCHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
T ss_conf 11689999999999999809998983599987526888867646799999999999999850543217888899999998
Q ss_pred ---CCCC---CHHHHCCCCHHCCCCCCCC-----CCCEEEEECCCCCCCCEE--------EEEEECCCCCCCCCCHHHHH
Q ss_conf ---1353---0343105620025789876-----544131015666864215--------89997287667521056798
Q gi|254781016|r 156 ---GSGS---ACRSFYRGFCEWICGTDQN-----GMDSFAVPFNNQWPDLRI--------GLLKIIDREKKIGSREAMEI 216 (355)
Q Consensus 156 ---GSGS---A~RSi~GG~v~W~~g~~~~-----~sds~a~~~~~~~~dl~~--------~i~iv~~~~K~vsSt~gm~~ 216 (355)
|.|| -+-|+|||++......... ............|+.+.+ ..++...+.+ .+|..+..
T Consensus 154 ~~~g~~sG~D~~~s~~GG~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~tg~~--~~t~~~v~ 231 (365)
T 3k17_A 154 VVQGNGSCGDIASCMYGGWIAYTTFDQEWVKHRLAYKSLEWFMKEPWPMLQIETLEEPVPTFSVGWTGTP--VSTGKLVS 231 (365)
T ss_dssp HHHSSCCSHHHHHHHHCSEEEEECCCHHHHHHHHTTSCHHHHHHSCCTTCEEEEECCCSSEEEEEECSCC--CCHHHHHH
T ss_pred HHCCCCCHHHHHHHHCCCEEEEEECCCCCEEEECCCCCCCEEECCCCCHHHHHHHHHHHHCEEEEECCCC--CCHHHHHH
T ss_conf 7446986021488873983999817840102211346630232378623557765413420067516996--44399999
Q ss_pred HHHH----CH-HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHH
Q ss_conf 8761----85-689999730550999999998099999999999999989998703899568657889999999999742
Q gi|254781016|r 217 TRHH----SP-FFTQWTQQISTDLAHIKQAIIDQDFIKLGEVAEKNALKMHATMIAASPPLLYWQKETIQGMERVWDARQ 291 (355)
Q Consensus 217 ~v~t----Sp-~y~~r~~~~~~~~~~~~~ai~~~Df~~l~~i~e~dal~mHa~~~~s~P~~~Y~~~~t~~ii~~v~~~R~ 291 (355)
.+.. -+ .+..-+........++.++++.+|++.|++++..+-..|..+....... ..+|+--++++.. ++
T Consensus 232 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~~~d~~~~g~lm~~~~~~l~~~~~~~~~~--vs~~~l~~lv~~a---~~ 306 (365)
T 3k17_A 232 QIHAFKQEDSKNYQHFLTRNNEIMKQIIQAFHTKDEELLYSSIKENRRILQELGTKAGVN--IETSLLKELADSA---EN 306 (365)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHTCC--CSCHHHHHHHHHH---HH
T ss_pred HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCC--CCCHHHHHHHHHH---HH
T ss_conf 999865426487765788887889999997631689999999999999999622215876--5899999999999---86
Q ss_pred CCCEEEEEECCC--CEEEEEEC-HHHHHHHHHHHHHCCCC
Q ss_conf 896199997779--81799955-89899999997632100
Q gi|254781016|r 292 QSIPIYFTLDAG--PNLKLLFT-HKIEETIKQFFPEITII 328 (355)
Q Consensus 292 ~g~~v~fT~DAG--PNv~il~~-~~~~~~i~~~l~~i~~~ 328 (355)
.|..+-.| .|| +.+..|++ +++.+.|.+.+.+.++.
T Consensus 307 ~g~~ak~t-GAG~Ggc~~al~~~~~~~~~l~~~~~~~g~~ 345 (365)
T 3k17_A 307 MGGAGKSS-GSGGGDCGIAFSKTKELAEKLVNEWEKLGIK 345 (365)
T ss_dssp TTSEEEEC-TTCSSSEEEEEESSHHHHHHHHHHHHHTTCE
T ss_pred CCEEEEEC-CCCCCCEEEEEECCHHHHHHHHHHHHHCCCE
T ss_conf 79089984-6065058999988889999999999987997