Query gi|254781016|ref|YP_003065429.1| diphosphomevalonate decarboxylase/isopentenyl-diphosphate delta-isomerase [Candidatus Liberibacter asiaticus str. psy62] Match_columns 355 No_of_seqs 128 out of 512 Neff 5.8 Searched_HMMs 23785 Date Wed Jun 1 01:02:04 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254781016.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 2hke_A Diphosphomevalonate dec 100.0 0 0 747.2 33.4 305 22-334 4-323 (380) 2 1fi4_A Mevalonate 5-diphosphat 100.0 0 0 725.4 31.0 316 11-326 13-347 (416) 3 3f0n_A Mevalonate pyrophosphat 100.0 0 0 703.5 33.2 299 21-325 21-343 (414) 4 2gs8_A Mevalonate pyrophosphat 100.0 0 0 637.9 30.7 307 17-332 2-311 (317) 5 3lto_A Mevalonate diphosphate 100.0 0 0 627.8 27.6 294 22-324 1-306 (323) 6 2hk2_A Diphosphomevalonate dec 100.0 0 0 596.0 30.2 303 20-324 5-310 (331) 7 1h72_C HK, homoserine kinase; 99.8 4.8E-18 2E-22 145.0 21.1 252 50-325 18-280 (296) 8 2x7i_A Mevalonate kinase; tran 99.7 3E-14 1.3E-18 118.5 26.2 275 20-328 3-299 (308) 9 3hul_A HSK, HK, homoserine kin 99.7 2.2E-15 9.1E-20 126.5 17.8 249 50-326 18-271 (298) 10 2oi2_A Mevalonate kinase; enzy 99.6 2.4E-11 1E-15 98.2 28.3 266 24-327 6-284 (292) 11 2pg9_A Phosphomevalonate kinas 99.6 5.6E-11 2.4E-15 95.6 27.6 265 48-328 23-324 (337) 12 2hfs_A Mevalonate kinase, puta 99.5 8.5E-11 3.6E-15 94.3 27.5 252 50-324 34-311 (332) 13 3k17_A LIN0012 protein; protei 99.5 4.1E-10 1.7E-14 89.5 27.7 292 20-328 3-345 (365) 14 1kkh_A Mevalonate kinase; mixe 99.5 3.2E-11 1.3E-15 97.3 22.0 274 22-326 4-307 (317) 15 3k85_A D-glycero-D-manno-hepto 99.3 8.4E-11 3.5E-15 94.4 15.7 282 24-327 4-324 (357) 16 2cz9_A Probable galactokinase; 99.3 4.5E-08 1.9E-12 75.3 25.9 220 90-325 68-328 (350) 17 2v8p_A 4-diphosphocytidyl-2-C- 99.3 7E-10 2.9E-14 87.9 16.6 253 20-318 3-258 (271) 18 1kvk_A MK, mevalonate kinase; 99.0 5.6E-07 2.4E-11 67.6 21.5 194 107-325 128-363 (395) 19 2ww4_A 4-diphosphocytidyl-2C-m 98.9 8.4E-08 3.5E-12 73.4 15.7 247 28-324 9-263 (283) 20 1uek_A 4-(cytidine 5'-diphosph 98.9 6.5E-08 2.7E-12 74.2 13.6 249 26-324 5-256 (275) 21 1pie_A Galactokinase; galactos 98.9 4.8E-06 2E-10 61.2 23.1 204 107-325 141-393 (419) 22 1wuu_A Galactokinase; galactos 98.8 2E-05 8.3E-10 56.9 24.3 288 8-325 23-378 (399) 23 2a2c_A N-acetylgalactosamine k 98.3 0.00042 1.8E-08 47.5 23.9 136 7-155 41-197 (478) 24 2aj4_A Galactokinase; galactos 97.1 0.022 9.3E-07 35.5 24.0 140 6-154 50-223 (548) 25 1z8o_A 6-deoxyerythronolide B 44.6 13 0.00057 16.0 2.8 18 296-316 340-357 (404) 26 2w3z_A Putative deacetylase; P 43.5 15 0.00062 15.8 3.0 19 277-295 287-306 (311) 27 2vyo_A ECU11_0510, chitooligos 41.6 14 0.00058 16.0 2.5 10 51-60 26-35 (254) 28 2c71_A Glycoside hydrolase, fa 41.4 16 0.00067 15.6 3.6 37 47-83 1-43 (216) 29 1jsu_C P27, KIP1, CIP2; comple 39.4 5 0.00021 19.1 -0.0 14 156-169 2-15 (84) 30 1sr2_A Putative sensor-like hi 39.0 17 0.00072 15.3 3.7 45 208-254 23-67 (116) 31 1odo_A Putative cytochrome P45 34.7 20 0.00084 14.9 3.8 18 296-316 343-360 (408) 32 1h3f_A Tyrosyl-tRNA synthetase 34.0 20 0.00086 14.8 4.3 55 203-257 228-284 (432) 33 2pv7_A T-protein [includes: ch 33.8 21 0.00087 14.8 4.2 24 232-255 245-268 (298) 34 1y42_X Tyrosyl-tRNA synthetase 33.4 21 0.00088 14.7 2.5 56 201-257 288-348 (392) 35 2iw0_A Chitin deacetylase; hyd 32.8 18 0.00077 15.1 2.0 33 51-83 42-79 (254) 36 2jan_A Tyrosyl-tRNA synthetase 25.9 28 0.0012 13.9 1.9 59 198-256 223-286 (432) 37 1rdt_E LXXLL motif coactivator 23.4 25 0.001 14.2 1.3 14 146-159 10-23 (26) 38 1rpx_A Protein (ribulose-phosp 21.3 18 0.00075 15.2 0.2 44 263-306 144-190 (230) 39 3m5v_A DHDPS, dihydrodipicolin 20.4 35 0.0015 13.1 5.6 79 231-327 217-298 (301) No 1 >2hke_A Diphosphomevalonate decarboxylase, putative; mevalonate diphosphate decarboxylase, lyase; 1.80A {Trypanosoma brucei} Probab=100.00 E-value=0 Score=747.18 Aligned_cols=305 Identities=28% Similarity=0.452 Sum_probs=280.8 Q ss_pred CCEEEECCCCEEEEECCCCCC--HHHCCCCCCCEEEEECC--CCEEEEEEECCC-CCCEEEECCEECCCCCHHHHHHHHH Q ss_conf 637897488424881167767--01175789843468127--810799997178-8857998787256652068999999 Q gi|254781016|r 22 EKSSAFLPSNIALCKYWGKRD--SKLNLPLNNSLSLSLGH--LGTITHITVIDS-DADCIILNGQKISSQSSFFKKTTQF 96 (355) Q Consensus 22 ~~~ta~ap~NIALIKYWGK~d--~~l~lP~n~SiS~TL~~--~~T~T~v~~~~~-~~d~~~lnG~~~~~~~~~~~ri~~~ 96 (355) ...||+||+|||||||||||| +.+|||+|||||+||+. ++|+|+|+++++ +.|++||||++.+..+ .+|+.++ T Consensus 4 ~~vt~~AP~NIAlIKYWGKrD~~e~L~lP~N~SiS~TL~~~~~~T~Ttv~~~~~~~~D~~~lNG~~~~~~~--~~ri~~~ 81 (380) T 2hke_A 4 QCVTVEAPINIAFIKYWGKREGGETLILPTNDSFSITLSASPFRSKTSVELRDDIETDTLRLNGTEVDVGK--TPRVQSM 81 (380) T ss_dssp CEEEEEECCEEEEECCCCBCTTCTTTTCBSSCEEEEEBCSSSCCEEEEEEEESSCSSCEEEETTEEECGGG--CHHHHHH T ss_pred CEEEEEEECEEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEEECCCCCCCEEEECCEECCCCC--CHHHHHH T ss_conf 61999820513465326777888677789998057995599976899999888887757999997787420--1689999 Q ss_pred HHHHHHHCC-----CEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHCCCCHHC Q ss_conf 742167619-----439999850233211012322479999999999818899988999886521353034310562002 Q gi|254781016|r 97 CDLFRQFSK-----VYFLIETSNNIPTKAGLASSASGFAALTLALFRIYSIPEKSESLSRVARLGSGSACRSFYRGFCEW 171 (355) Q Consensus 97 l~~~r~~~~-----~~~~I~S~N~fPtaaGLASSASgfAALa~Al~~~~~~~~~~~~lS~lARlGSGSA~RSi~GG~v~W 171 (355) ++.+|...+ .+++|+|+|||||||||||||||||||++|+.++|+.+ .++|+|||+||||||||+|||||+| T Consensus 82 l~~ir~~~~~~~~~~~~~I~S~NnFPtaAGLASSAsg~AALa~al~~~~~~~---~~lS~lAR~GSGSAcRSi~GGfv~W 158 (380) T 2hke_A 82 LLHLRSTCPEELKNKKVNIVSENNFPTAAGMASSASGYCAMSAALIRAFKST---TNVSMLARLGSGSACRSAFGGFVIW 158 (380) T ss_dssp HHHHHTSSCHHHHTCEEEEEEEECSCTTSCCCHHHHHHHHHHHHHHHHHTCS---SCHHHHHHHHCGGGGGGGSSSEEEE T ss_pred HHHHHHHCHHHHCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCC---HHHHHHHHHHCCCCHHHHCCCEEEE T ss_conf 9999985614304751699975788205657877899999999999874254---4578998752765013303884572 Q ss_pred CCCCCCCCCCEEEEEC--CCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHCHHHHHHHHH-HHHHHHHHHHHHHHCCHH Q ss_conf 5789876544131015--6668642158999728766752105679887618568999973-055099999999809999 Q gi|254781016|r 172 ICGTDQNGMDSFAVPF--NNQWPDLRIGLLKIIDREKKIGSREAMEITRHHSPFFTQWTQQ-ISTDLAHIKQAIIDQDFI 248 (355) Q Consensus 172 ~~g~~~~~sds~a~~~--~~~~~dl~~~i~iv~~~~K~vsSt~gm~~~v~tSp~y~~r~~~-~~~~~~~~~~ai~~~Df~ 248 (355) ++|..+|++|+||+++ +.|||||+++|++|++++|+|+||+|||++|+|||||+.|..+ +++++++|++||+++||+ T Consensus 159 ~~g~~~dgsds~A~qi~~~~~w~~l~~~ilvvs~~~K~vsSt~GM~~~v~TSpl~~~r~~~~~~~~~~~~~~Ai~~~Df~ 238 (380) T 2hke_A 159 NKGEKPDGSDCVATQFVDETHWPEIQVMCAVLKGAQKDVSSTKGMQQSLKTSPLMKKRISETVPERMKIASRAIKARDFA 238 (380) T ss_dssp ECCSCTTSTTCEEEEEECTTSCTTEEEEEEECCCCSCCCCHHHHHHHHHHHCTTHHHHHHTHHHHHHHHHHHHHHHTCHH T ss_pred CCCCCCCCCCCCEEECCCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHH T ss_conf 26899996000035236644551120699994377677775288999988391089999986377899999999839999 Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHH--CCCEEEEEECCCCEEEEEECHHHHHHHHHHHHHCC Q ss_conf 9999999999989998703899568657889999999999742--89619999777981799955898999999976321 Q gi|254781016|r 249 KLGEVAEKNALKMHATMIAASPPLLYWQKETIQGMERVWDARQ--QSIPIYFTLDAGPNLKLLFTHKIEETIKQFFPEIT 326 (355) Q Consensus 249 ~l~~i~e~dal~mHa~~~~s~P~~~Y~~~~t~~ii~~v~~~R~--~g~~v~fT~DAGPNv~il~~~~~~~~i~~~l~~i~ 326 (355) +|++++|+|+++|||+||+++|||+||+|+|+++|++|+++|+ +|+++||||||||||||||+++++++|.++|.+ T Consensus 239 ~~~ei~e~ds~~mHA~~l~s~Ppi~Yl~~~S~~ii~~V~~~r~~~~~~~v~yT~DAGPNv~ll~~~~~~~~v~~~l~~-- 316 (380) T 2hke_A 239 TFAEIAMLESDDLQEICATTEPKITYATEDSYAMIRLVKAYNAKKGRTALAYTFDAGANCFLFVLKEDLPEAVAMLME-- 316 (380) T ss_dssp HHHHHHHHHHHHHHHHHHTSSSCCCCCCHHHHHHHHHHHHHHHHHTSCCEEEECCSSSCEEEEEEGGGHHHHHHHHHH-- T ss_pred HHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEEEEECCCCHHHHHHHHHH-- T ss_conf 999999999999999985379987997846999999999999746894199997889877999725129999999998-- Q ss_pred CCCCCCCC Q ss_conf 00368887 Q gi|254781016|r 327 IIDPLDSP 334 (355) Q Consensus 327 ~~~~~~~~ 334 (355) .+|.... T Consensus 317 -~fp~~~~ 323 (380) T 2hke_A 317 -HFPTPFE 323 (380) T ss_dssp -HSCCCGG T ss_pred -HCCCCHH T ss_conf -7899615 No 2 >1fi4_A Mevalonate 5-diphosphate decarboxylase; mixed alpha/beta structure, ATP binding, cholesterol biosynthesis, structural genomics, PSI; 2.27A {Saccharomyces cerevisiae} SCOP: d.14.1.5 d.58.26.2 Probab=100.00 E-value=0 Score=725.42 Aligned_cols=316 Identities=32% Similarity=0.543 Sum_probs=294.3 Q ss_pred HHHHCCCCCCCCCEEEECCCCEEEEECCCCCCHHHCCCCCCCEEEEE--CCCCEEEEEEECCC-CCCEEEECCEECCCCC Q ss_conf 87403467877637897488424881167767011757898434681--27810799997178-8857998787256652 Q gi|254781016|r 11 RYIGECNPKINEKSSAFLPSNIALCKYWGKRDSKLNLPLNNSLSLSL--GHLGTITHITVIDS-DADCIILNGQKISSQS 87 (355) Q Consensus 11 ~~~~~~~~~~~~~~ta~ap~NIALIKYWGK~d~~l~lP~n~SiS~TL--~~~~T~T~v~~~~~-~~d~~~lnG~~~~~~~ 87 (355) -|+...+.....++||+||+||||||||||||+++|||+|||||+|| |.++|+|+|++++. ++|++||||++.+... T Consensus 13 ~~~~~~~~~~~~~~t~~AP~NIAlIKYWGKrd~~l~lP~n~SiS~TL~~d~~~T~Ttv~~s~~~~~d~~~lNG~~~~~~~ 92 (416) T 1fi4_A 13 GLVPRGSHMTVYTASVTAPVNIATLKYWGKRDTKLNLPTNSSISVTLSQDDLRTLTSAATAPEFERDTLWLNGEPHSIDN 92 (416) T ss_dssp ----------CEEEEEEECCEEEEECCCCEEETTTTEESSCEEEEEBCTTTSCEEEEEEECTTCCSCBCTTTCCBSSSSS T ss_pred CCCCCCCCEEEEEEEEEEECCEEEEECCCCCCCCCCCCCCCCEEEEECCCCCEEEEEEEECCCCCCCEEEECCEECCCCC T ss_conf 86637870389999997534332640157668767899998147893699987789999788887787999998657630 Q ss_pred HHHHHHHHHHHHHHHH-----------CCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHC Q ss_conf 0689999997421676-----------19439999850233211012322479999999999818899988999886521 Q gi|254781016|r 88 SFFKKTTQFCDLFRQF-----------SKVYFLIETSNNIPTKAGLASSASGFAALTLALFRIYSIPEKSESLSRVARLG 156 (355) Q Consensus 88 ~~~~ri~~~l~~~r~~-----------~~~~~~I~S~N~fPtaaGLASSASgfAALa~Al~~~~~~~~~~~~lS~lARlG 156 (355) ++.+++.++++.++.. .+++++|+|+|||||||||||||||||||+.|++++++++++.+++|++||+| T Consensus 93 ~r~~~~l~~ir~l~~~~~~~~~~~~~~~~~~l~I~S~NnfPtaaGLASSASg~AAl~~al~~l~~~~l~~~elS~lAR~G 172 (416) T 1fi4_A 93 ERTQNCLRDLRQLRKEMESKDASLPTLSQWKLHIVSENNFPTAAGLASSAAGFAALVSAIAKLYQLPQSTSEISRIARKG 172 (416) T ss_dssp SSHHHHHHHHHHHHHHHHTTCTTSCCGGGSCEEEEEEECCCTTSCCCHHHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHC T ss_conf 88999999999999875401224653346228999956884224688899999999999999856778889999998610 Q ss_pred CCCCHHHHCCCCHHCCCCCCCCCCCEEEEECC--CCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHCHHHHHHHHH-HHH Q ss_conf 35303431056200257898765441310156--668642158999728766752105679887618568999973-055 Q gi|254781016|r 157 SGSACRSFYRGFCEWICGTDQNGMDSFAVPFN--NQWPDLRIGLLKIIDREKKIGSREAMEITRHHSPFFTQWTQQ-IST 233 (355) Q Consensus 157 SGSA~RSi~GG~v~W~~g~~~~~sds~a~~~~--~~~~dl~~~i~iv~~~~K~vsSt~gm~~~v~tSp~y~~r~~~-~~~ 233 (355) |||||||+|||||+|+.|...|++|++++++. .|||+|+++|++|++++|+|+||+||+++++|||+|+.|++. ++. T Consensus 173 SGSAcRSi~GG~v~W~~g~~~dgsds~A~~v~~~~~~p~l~~iilvv~~~~K~vsST~gm~~~v~tS~~~~~~~~~~a~~ 252 (416) T 1fi4_A 173 SGSACRSLFGGYVAWEMGKAEDGHDSMAVQIADSSDWPQMKACVLVVSDIKKDVSSTQGMQLTVATSELFKERIEHVVPK 252 (416) T ss_dssp HGGGGGGGSSSEEEEECCSCTTCTTCEEEEEECGGGSTTEEEEEEEECCCSCCCCHHHHHHHHHHHCSHHHHHHHTHHHH T ss_pred CCCHHHHHHCCEEEECCCCCCCCCCCEEEECCCCCCCCCCEEEEEEECCCCCCCCCCCCHHCCCCCCCCHHHHHHHHHHH T ss_conf 63445564088778437888778763478715655664400389983466555656310111545575789999875066 Q ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHH--CCCEEEEEECCCCEEEEEEC Q ss_conf 0999999998099999999999999989998703899568657889999999999742--89619999777981799955 Q gi|254781016|r 234 DLAHIKQAIIDQDFIKLGEVAEKNALKMHATMIAASPPLLYWQKETIQGMERVWDARQ--QSIPIYFTLDAGPNLKLLFT 311 (355) Q Consensus 234 ~~~~~~~ai~~~Df~~l~~i~e~dal~mHa~~~~s~P~~~Y~~~~t~~ii~~v~~~R~--~g~~v~fT~DAGPNv~il~~ 311 (355) ++.+|++||+++||+.|++++|.|+++|||+||++.|||+||+|+|+++|++|+++|+ ++.++||||||||||||||+ T Consensus 253 ~~~~m~~Ai~~~Df~~~~ei~e~ds~~mHa~~l~s~Ppi~Y~~~~s~~ii~~v~~~r~~~~~~~~~yT~DAGPNv~il~~ 332 (416) T 1fi4_A 253 RFEVMRKAIVEKDFATFAKETMMDSNSFHATCLDSFPPIFYMNDTSKRIISWCHTINQFYGETIVAYTFDAGPNAVLYYL 332 (416) T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSCCCCCCHHHHHHHHHHHHHHHHHTSCCEEEEECSSSCEEEEEE T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCEEEEEC T ss_conf 89999999983899999999999899999998636998475684279999999999986389728999678877799974 Q ss_pred HHHHHHHHHHHHHCC Q ss_conf 898999999976321 Q gi|254781016|r 312 HKIEETIKQFFPEIT 326 (355) Q Consensus 312 ~~~~~~i~~~l~~i~ 326 (355) ++++++|.++|.++. T Consensus 333 ~~~~~~v~~~l~~~f 347 (416) T 1fi4_A 333 AENESKLFAFIYKLF 347 (416) T ss_dssp GGGHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHC T ss_conf 766999999999976 No 3 >3f0n_A Mevalonate pyrophosphate decarboxylase; cholesterol biosynthesis, lipid synthesis, lyase, steroid biosynthesis, sterol biosynthesis; 1.90A {Mus musculus} PDB: 3d4j_A Probab=100.00 E-value=0 Score=703.48 Aligned_cols=299 Identities=32% Similarity=0.531 Sum_probs=277.0 Q ss_pred CCCEEEECCCCEEEEECCCCCCHHHCCCCCCCEEEEE--CCCCEEEEEEECCC-CCCEEEECCEECCCCCHHHHHHHHHH Q ss_conf 7637897488424881167767011757898434681--27810799997178-88579987872566520689999997 Q gi|254781016|r 21 NEKSSAFLPSNIALCKYWGKRDSKLNLPLNNSLSLSL--GHLGTITHITVIDS-DADCIILNGQKISSQSSFFKKTTQFC 97 (355) Q Consensus 21 ~~~~ta~ap~NIALIKYWGK~d~~l~lP~n~SiS~TL--~~~~T~T~v~~~~~-~~d~~~lnG~~~~~~~~~~~ri~~~l 97 (355) ....||+||+||||||||||||+++|||+|||||+|| +.++|+|+|+++++ ++|++||||++.+..+ +|+.+++ T Consensus 21 ~~~vT~~Ap~NIAlIKYWGKrD~~l~lP~N~SiS~TL~~~~~~T~Ttv~~s~~~~~D~~~lNGk~~~~~~---~Ri~~~l 97 (414) T 3f0n_A 21 DLMVTCTAPVNIAVIKYWGKRDEALILPINSSLSVTLHQDQLKTTTTVAISKDFTEDRIWLNGREEDVGQ---PRLQACL 97 (414) T ss_dssp CEEEEEEECCEEEEECCCCEEETTTTEESSCEEEEEBCTTTSCEEEEEEECTTCCSCEEEETTEEECTTC---HHHHHHH T ss_pred CEEEEEECCCCEEEEECCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEEECCCCCCCEEEECCEECCCCC---HHHHHHH T ss_conf 6389998236752541257568877899998057980588867899999788887878999999777635---7899999 Q ss_pred HHHHHHC----------------CCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCH Q ss_conf 4216761----------------943999985023321101232247999999999981889998899988652135303 Q gi|254781016|r 98 DLFRQFS----------------KVYFLIETSNNIPTKAGLASSASGFAALTLALFRIYSIPEKSESLSRVARLGSGSAC 161 (355) Q Consensus 98 ~~~r~~~----------------~~~~~I~S~N~fPtaaGLASSASgfAALa~Al~~~~~~~~~~~~lS~lARlGSGSA~ 161 (355) +.+|.+. ..+++|+|+|||||+|||||||||||||+.|++++++++ .++|+|||+|||||| T Consensus 98 ~~ir~~~~~~~~~~~~~~~p~~~~~~~~I~S~NnfPtaAGLASSASg~aALa~al~~l~~l~---~~lS~iARlGSGSA~ 174 (414) T 3f0n_A 98 REIRRLARKRRSTEDGDTLPLSLSYKVHVASVNNFPTAAGLASSAAGYACLAYTLAQVYGVE---GDLSEVARRGSGSAC 174 (414) T ss_dssp HHHHHHHHC-------CCHHHHHHSCEEEEEEECCCGGGCCCHHHHHHHHHHHHHHHHHTCC---SCCHHHHHHHCGGGG T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCC---HHHHHHHHHHCCCCC T ss_conf 99999987631112233465455642699851476166678887999999999999885353---359999986078853 Q ss_pred HHHCCCCHHCCCCCCCCCCCEEEEEC--CCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHCHHHHHHHHH-HHHHHHHH Q ss_conf 43105620025789876544131015--6668642158999728766752105679887618568999973-05509999 Q gi|254781016|r 162 RSFYRGFCEWICGTDQNGMDSFAVPF--NNQWPDLRIGLLKIIDREKKIGSREAMEITRHHSPFFTQWTQQ-ISTDLAHI 238 (355) Q Consensus 162 RSi~GG~v~W~~g~~~~~sds~a~~~--~~~~~dl~~~i~iv~~~~K~vsSt~gm~~~v~tSp~y~~r~~~-~~~~~~~~ 238 (355) ||+|||||.|+.|...|++|++++++ ..|||+++++|++|++++|+|+||+||+.+++|||||+.|+++ ++.++.+| T Consensus 175 RSi~GGfv~W~~g~~~dgsds~a~~i~~~~~~p~l~~iilivd~~~K~vsSt~gm~~~~~tSp~~~~r~~~~~~~~i~~m 254 (414) T 3f0n_A 175 RSLYGGFVEWQMGEQADGKDSIARQIAPEWHWPQLRILILVVSADKKQTGSTVGMQTSVETSTLLKFRAESVVPERMKEM 254 (414) T ss_dssp GGGSSSEEEECCCSCTTCTTCCEEEEECTTSCTTEEEEEEEESCCC-CCCHHHHHHHHHHHCHHHHHHHHHTHHHHHHHH T ss_pred CCCCCCEEEECCCCCCCCCCCCCEECCCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHH T ss_conf 10316645604678878876530334664456510069998246556677678776401036479999998658999999 Q ss_pred HHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHH--CCCEEEEEECCCCEEEEEECHHHHH Q ss_conf 99998099999999999999989998703899568657889999999999742--8961999977798179995589899 Q gi|254781016|r 239 KQAIIDQDFIKLGEVAEKNALKMHATMIAASPPLLYWQKETIQGMERVWDARQ--QSIPIYFTLDAGPNLKLLFTHKIEE 316 (355) Q Consensus 239 ~~ai~~~Df~~l~~i~e~dal~mHa~~~~s~P~~~Y~~~~t~~ii~~v~~~R~--~g~~v~fT~DAGPNv~il~~~~~~~ 316 (355) ++||+++||++||+++|+|+++|||+||+++|||+||+|.|+++|+.|+++|+ ++.+|||||||||||||||++++++ T Consensus 255 ~~Ai~~~Df~~fgel~e~dsl~mHA~~l~s~Pp~~Y~~~~s~~ii~~V~~~r~~~~~~~v~~T~DAGPNv~il~~~~~~~ 334 (414) T 3f0n_A 255 TRCIQEQDFQGFAQLTMKDSNQFHATCLDTFPPISYLNDTSRRIIQLVHRFNTHHGQTKVAYTFDAGPNAVIFTLEDTVA 334 (414) T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSCCCCCCHHHHHHHHHHHHHHHHHTSCCEEEECCSSSCEEEEEEHHHHH T ss_pred HHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCEEEEEECCCHH T ss_conf 99999599999999999999999999854799858767648999999999999669976899978887879997325499 Q ss_pred HHHHHHHHC Q ss_conf 999997632 Q gi|254781016|r 317 TIKQFFPEI 325 (355) Q Consensus 317 ~i~~~l~~i 325 (355) +|.++|.+. T Consensus 335 ~v~~~l~~~ 343 (414) T 3f0n_A 335 EFVAAVRHS 343 (414) T ss_dssp HHHHHHHHH T ss_pred HHHHHHHHH T ss_conf 999999987 No 4 >2gs8_A Mevalonate pyrophosphate decarboxylase; structural genomics, PSI, protein structure initiative; HET: MSE; 1.50A {Streptococcus pyogenes m1 gas} Probab=100.00 E-value=0 Score=637.89 Aligned_cols=307 Identities=33% Similarity=0.489 Sum_probs=281.5 Q ss_pred CCCCCCCEEEECCCCEEEEECCCCCCHHHCCCCCCCEEEEECCCCEEEEEEECCC--CCCEEEECCEECCCCCHHHHHHH Q ss_conf 6787763789748842488116776701175789843468127810799997178--88579987872566520689999 Q gi|254781016|r 17 NPKINEKSSAFLPSNIALCKYWGKRDSKLNLPLNNSLSLSLGHLGTITHITVIDS--DADCIILNGQKISSQSSFFKKTT 94 (355) Q Consensus 17 ~~~~~~~~ta~ap~NIALIKYWGK~d~~l~lP~n~SiS~TL~~~~T~T~v~~~~~--~~d~~~lnG~~~~~~~~~~~ri~ 94 (355) |+--....||+||+||||||||||+|+++|||+|||||||||+|+|+|+|++.+. ++|++++||++.+. +..+|+. T Consensus 2 ~~~~~~~vt~~a~~NIAliKYWGK~d~~~~lP~n~SiS~TL~~~~T~T~v~~~~~~~~~d~~~~ng~~~~~--~~~~~~~ 79 (317) T 2gs8_A 2 NAMDPNVITVTSYANIAIIKYWGKENQAKMIPSTSSISLTLENMFTTTSVSFLPDTATSDQFYINGILQND--EEHTKIS 79 (317) T ss_dssp CCSSCCEEEEEEEEEEEEECCCCEEETTTTEESSCEEEEEEEEEEEEEEEEECCTTCCSCEEEETTEECCH--HHHHHHH T ss_pred CCCCCCCEEEEECCCEEEEECCCCCCCCCCCCCCCEEEEECCCCCCEEEEEEECCCCCCEEEEECCEECCC--HHHHHHH T ss_conf 97889938999326188883057568888789998251696789868999983588885399999987780--6788999 Q ss_pred HHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHCCCCHHCCCC Q ss_conf 99742167619439999850233211012322479999999999818899988999886521353034310562002578 Q gi|254781016|r 95 QFCDLFRQFSKVYFLIETSNNIPTKAGLASSASGFAALTLALFRIYSIPEKSESLSRVARLGSGSACRSFYRGFCEWICG 174 (355) Q Consensus 95 ~~l~~~r~~~~~~~~I~S~N~fPtaaGLASSASgfAALa~Al~~~~~~~~~~~~lS~lARlGSGSA~RSi~GG~v~W~~g 174 (355) +++++++.....+++|+|+|+||+++||||||||+||++.|++++++++++.++++++||+||||||||+|||||+|..+ T Consensus 80 ~~~~~~~~~~~~~~~I~s~n~~P~aaGLaSSAs~~aA~~~a~~~~~~~~l~~~~ls~lAr~gsGSa~rSi~GG~v~w~~~ 159 (317) T 2gs8_A 80 AIIDQFRQPGQAFVKMETQNNMPTAAGLSSSSSGLSALVKACDQLFDTQLDQKALAQKAKFASGSSSRSFFGPVAAWDKD 159 (317) T ss_dssp HHHTTTCCTTCCCEEEEEECCSCGGGCCCHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHGGGGGGGSCSEEEECTT T ss_pred HHHHHHHHHCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCHHHCCEEEEECC T ss_conf 99986243136608999972575310000068899999999999737888889999999752877051431886899518 Q ss_pred CCCCCCCEEEEECCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH Q ss_conf 98765441310156668642158999728766752105679887618568999973055099999999809999999999 Q gi|254781016|r 175 TDQNGMDSFAVPFNNQWPDLRIGLLKIIDREKKIGSREAMEITRHHSPFFTQWTQQISTDLAHIKQAIIDQDFIKLGEVA 254 (355) Q Consensus 175 ~~~~~sds~a~~~~~~~~dl~~~i~iv~~~~K~vsSt~gm~~~v~tSp~y~~r~~~~~~~~~~~~~ai~~~Df~~l~~i~ 254 (355) +.+.+++ ..|+++.+++++|+.++|+++||+||++++.|||+|+.|+.++..++..+++|++++||+.|++++ T Consensus 160 ----~~~~~~~---~~~~~~~~~i~~v~~~~k~v~St~~~~~~~~~s~~~~~~~~~~~~~~~~~~~al~~~D~~~l~~~~ 232 (317) T 2gs8_A 160 ----SGAIYKV---ETDLKMAMIMLVLNAAKKPISSREGMKLCRDTSTTFDQWVEQSAIDYQHMLTYLKTNNFEKVGQLT 232 (317) T ss_dssp ----TCCEEEC---CCCCCEEEEEEECCCSSCCSCHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH T ss_pred ----CCCEEEC---CCCCCHHEEEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH T ss_conf ----9850214---789733369999723676665407688652020257888987436799999999879999999999 Q ss_pred HHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEEEECHHHHHHHHHHHHHC-CCCCCCC Q ss_conf 99999899987038995686578899999999997428961999977798179995589899999997632-1003688 Q gi|254781016|r 255 EKNALKMHATMIAASPPLLYWQKETIQGMERVWDARQQSIPIYFTLDAGPNLKLLFTHKIEETIKQFFPEI-TIIDPLD 332 (355) Q Consensus 255 e~dal~mHa~~~~s~P~~~Y~~~~t~~ii~~v~~~R~~g~~v~fT~DAGPNv~il~~~~~~~~i~~~l~~i-~~~~~~~ 332 (355) |+|+++||++||++.||++||+|+|+++|++|+++|++|.++|||+|||||||+||++++.++|.+.|.+. .++.+.. T Consensus 233 e~d~~~lHa~~~~~~pp~~~~~~~t~~vi~~i~~~r~~G~~~~~t~dAGPnV~~l~~~~~~~~i~~~l~~~~~~i~~~~ 311 (317) T 2gs8_A 233 EANALAMHATTKTANPPFSYLTKESYQAMEAVKELRQEGFACYFTMDAGPNVKVLCLEKDLAQLAERLGKNYRIIVSKT 311 (317) T ss_dssp HHHHHHHHHHHTTSSSCCCSCCHHHHHHHHHHHHHHHTTCCEEEECCSSSCEEEEEEGGGHHHHHHHHHTTSEEEEEEB T ss_pred HHHHHHHHHHHHHCCCCEEECCHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEECHHHHHHHHHHHHHHCCEEEECC T ss_conf 9999999999983599724218259999999999996898299992688267999736029999999976136998168 No 5 >3lto_A Mevalonate diphosphate decarboxylase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.27A {Legionella pneumophila} Probab=100.00 E-value=0 Score=627.82 Aligned_cols=294 Identities=29% Similarity=0.414 Sum_probs=264.5 Q ss_pred CCEEEECCCCEEEEECCCCCCHHHCCCCCCCEEEEECCCCEEEEEEECCCCC---CEEEECCEECCCC-CHHHHHHHHHH Q ss_conf 6378974884248811677670117578984346812781079999717888---5799878725665-20689999997 Q gi|254781016|r 22 EKSSAFLPSNIALCKYWGKRDSKLNLPLNNSLSLSLGHLGTITHITVIDSDA---DCIILNGQKISSQ-SSFFKKTTQFC 97 (355) Q Consensus 22 ~~~ta~ap~NIALIKYWGK~d~~l~lP~n~SiS~TL~~~~T~T~v~~~~~~~---d~~~lnG~~~~~~-~~~~~ri~~~l 97 (355) .+.||+||+||||||||||||+++|||+|||||+|||.++|+|+|++.+... |++++||++.... ....+|+..++ T Consensus 1 m~~~a~Ap~NIAliKYWGK~d~~~~lP~n~SiSlTL~~~~T~t~v~~~~~~~~~~d~~~lng~~~~~~~~~~~~r~~~~l 80 (323) T 3lto_A 1 MHWFAQAPANIALIKYMGKKDENSNLPDNSSLSYTLSNLLSSVKLEKLPTKKDIWEPLTIPGAPEFNLSVEAQKRFIDHL 80 (323) T ss_dssp CEEEEEEEEEEEEECCTTCBCTTTCCBSSCEEEEEEEEEEEEEEEEECSSSSCEECCBCTTSSBCCCCCSHHHHHHHHHH T ss_pred CCCEEECCCEEEEEEECCCCCCCCCCCCCCEEEEEECCCCCEEEEEEECCCCCCCEEEEECCEECCCCCHHHHHHHHHHH T ss_conf 98341775446898304756888878999712568069966899998426776421689898353332579999999999 Q ss_pred HHHHHHCCC--EEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHC-----CCCCHHHHHHHHHHCCCCCHHHHCCCCHH Q ss_conf 421676194--39999850233211012322479999999999818-----89998899988652135303431056200 Q gi|254781016|r 98 DLFRQFSKV--YFLIETSNNIPTKAGLASSASGFAALTLALFRIYS-----IPEKSESLSRVARLGSGSACRSFYRGFCE 170 (355) Q Consensus 98 ~~~r~~~~~--~~~I~S~N~fPtaaGLASSASgfAALa~Al~~~~~-----~~~~~~~lS~lARlGSGSA~RSi~GG~v~ 170 (355) +++++..+. +++|+|+|+||+|+||||||||++|++.|++.+++ ...+..++|.+||+||||||||+|||||+ T Consensus 81 ~~i~~~~~~~~~~~I~s~N~~P~aaGLaSSASa~aA~~~aa~~~~~~~~~~~~~~~~~ls~~ar~gSgSaarSi~GG~v~ 160 (323) T 3lto_A 81 VRLKEYFGYVGGFLIQSSNNFPHSSGLASSASSFAALTKCASIALSELTQKPLPSIDEQAQLSRLGSGSSCRSFYAPWAL 160 (323) T ss_dssp HHHHHHHTCCCCEEEEEEESSCTTTTCCCHHHHHHHHHHHHHHHHHHHHTCCCCCHHHHHHHHHTTCGGGGGGGSCSEEE T ss_pred HHHHHHCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCHHHCCCEE T ss_conf 99998679874289999568774312110567999999999999740322320028899999722899745044288068 Q ss_pred CCCCCCCCCCCEEEEECCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCHHHH Q ss_conf 25789876544131015666864215899972876675210567988761856899997305509999999980999999 Q gi|254781016|r 171 WICGTDQNGMDSFAVPFNNQWPDLRIGLLKIIDREKKIGSREAMEITRHHSPFFTQWTQQISTDLAHIKQAIIDQDFIKL 250 (355) Q Consensus 171 W~~g~~~~~sds~a~~~~~~~~dl~~~i~iv~~~~K~vsSt~gm~~~v~tSp~y~~r~~~~~~~~~~~~~ai~~~Df~~l 250 (355) |..+ ..+ ....+|+++.+++++|+..+|+++||+||+ .+.|||||+.|+.+++.++..+++||+++||+.| T Consensus 161 w~~~----~~~----~~~~~~~~~~~~i~vv~~~~k~vsS~~a~~-~~~tsp~~~~~~~~~~~~~~~~~~Al~~~d~~~l 231 (323) T 3lto_A 161 WTGD----KVS----AIDLPYKDLLHQVIVISSQEKEIPSRVAHK-LVKTSPFYETRSERAEANLKLLLNAFENKDWTSI 231 (323) T ss_dssp EETT----EEE----ECCCSCCSCEEEEEECCCCTTCCCHHHHHH-HGGGSTTTTTHHHHHHHHHHHHHHHHHTTCHHHH T ss_pred EECC----CCC----EEECCCCCCCCEEEEECCCCCCCCCHHHHH-HCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHH T ss_conf 5079----875----330576451115999427766677265551-0568976699998717759999999974789999 Q ss_pred HHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHH-CCCEEEEEECCCCEEEEEECHHHHHHHHHHHHH Q ss_conf 99999999989998703899568657889999999999742-896199997779817999558989999999763 Q gi|254781016|r 251 GEVAEKNALKMHATMIAASPPLLYWQKETIQGMERVWDARQ-QSIPIYFTLDAGPNLKLLFTHKIEETIKQFFPE 324 (355) Q Consensus 251 ~~i~e~dal~mHa~~~~s~P~~~Y~~~~t~~ii~~v~~~R~-~g~~v~fT~DAGPNv~il~~~~~~~~i~~~l~~ 324 (355) ++++|.|+++||++|+++.|||+||+|+|+++|+.|+++|+ .|.++||||||||||+|||++++.+.|++|+.+ T Consensus 232 ~~l~e~d~~~mHa~~~~s~pp~~y~~~~s~~~i~~v~~~r~~~G~~~~~T~DAGPnv~vl~~~~~~~~v~~~~~~ 306 (323) T 3lto_A 232 YQICWHEFLDMHQLFKTCEKPFSYITDNTLHILSVIEKFWNEKGDGPVVTMDAGPNVHLLYRSDQTDLARQFKSD 306 (323) T ss_dssp HHHHHHHHHHHHHHHHTSSSCCCSCCHHHHHHHHHHHHHHHHHSCCCEEECCSSSCEEEEECGGGHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHCCCCEEECCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEECCCCHHHHHHHHHH T ss_conf 999999999989998705998550182699999999999996699369986788377999754548999999997 No 6 >2hk2_A Diphosphomevalonate decarboxylase; mevalonate diphosphate decarboxylase, lyase; 2.30A {Staphylococcus aureus} PDB: 2hk3_A Probab=100.00 E-value=0 Score=595.97 Aligned_cols=303 Identities=40% Similarity=0.618 Sum_probs=286.0 Q ss_pred CCCCEEEECCCCEEEEECCCCCCHHHCCCCCCCEEEEECCCCEEEEEEECCC-CCCEEEECCEECCCCCHHHHHHHHHHH Q ss_conf 7763789748842488116776701175789843468127810799997178-885799878725665206899999974 Q gi|254781016|r 20 INEKSSAFLPSNIALCKYWGKRDSKLNLPLNNSLSLSLGHLGTITHITVIDS-DADCIILNGQKISSQSSFFKKTTQFCD 98 (355) Q Consensus 20 ~~~~~ta~ap~NIALIKYWGK~d~~l~lP~n~SiS~TL~~~~T~T~v~~~~~-~~d~~~lnG~~~~~~~~~~~ri~~~l~ 98 (355) ...++||+||+||||||||||||+++|||.|||||+|||+|+|+|+|++++. ++|+|++||++.+.. ..+||.++++ T Consensus 5 ~~~~~~a~a~~nialiKYwGk~d~~~~~P~n~SiS~tl~~~~t~t~v~~~~~~~~d~~~~ng~~~~~~--~~~~i~~~~~ 82 (331) T 2hk2_A 5 MIKSGKARAHTNIALIKYWGKKDEALIIPMNNSISVTLEKFYTETKVTFNDQLTQDQFWLNGEKVSGK--ELEKISKYMD 82 (331) T ss_dssp HCEEEEEEEEEEEEEECCCCEEETTTTEESSCEEEEEEEEEEEEEEEEEETTCCSCEEEETTEEECTH--HHHHHHHHHH T ss_pred CCCCEEEECCCEEEEEEECCCCCCCCCCCCCCEEEEECCCCCEEEEEEEECCCCCEEEEECCEECCCH--HHHHHHHHHH T ss_conf 15523998765068885227567777788998776897788017999980698851899999538826--8899999999 Q ss_pred HHHHHCCC--EEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHCCCCHHCCCCCC Q ss_conf 21676194--3999985023321101232247999999999981889998899988652135303431056200257898 Q gi|254781016|r 99 LFRQFSKV--YFLIETSNNIPTKAGLASSASGFAALTLALFRIYSIPEKSESLSRVARLGSGSACRSFYRGFCEWICGTD 176 (355) Q Consensus 99 ~~r~~~~~--~~~I~S~N~fPtaaGLASSASgfAALa~Al~~~~~~~~~~~~lS~lARlGSGSA~RSi~GG~v~W~~g~~ 176 (355) .+|+..+. +++|+++|+||+++|||||||++||++.|++++++++++.++++.+||+||||+|||+|||||+|..|.. T Consensus 83 ~~r~~~~~~~~~~I~s~n~iP~~~GLgSSAa~~aA~~~a~~~~~~~~l~~~el~~lA~~gsGs~~~si~GG~v~~~~~~~ 162 (331) T 2hk2_A 83 IVRNRAGIDWYAEIESDNFVPTAAGLASSASAYAALAAACNQALDMQLSDKDLSRLARIGSGSASRSIYGGFAEWEKGYS 162 (331) T ss_dssp HHHHHHTCCCEEEEEEEEESCGGGTCCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHTTCGGGGGGGSSSEEEEECCSS T ss_pred HHHHHCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCEECCEEEEECCCC T ss_conf 99986199874799997368753332578999999999998762057998999999764287621011687667744788 Q ss_pred CCCCCEEEEECCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH Q ss_conf 76544131015666864215899972876675210567988761856899997305509999999980999999999999 Q gi|254781016|r 177 QNGMDSFAVPFNNQWPDLRIGLLKIIDREKKIGSREAMEITRHHSPFFTQWTQQISTDLAHIKQAIIDQDFIKLGEVAEK 256 (355) Q Consensus 177 ~~~sds~a~~~~~~~~dl~~~i~iv~~~~K~vsSt~gm~~~v~tSp~y~~r~~~~~~~~~~~~~ai~~~Df~~l~~i~e~ 256 (355) ++...++++....+|+++.+++++++.+.|+++||++|+.+++|+|||+.|++.++.++.+++.+++++||+.|++++|+ T Consensus 163 ~~~~~~~~l~~~~~~~~~~~vi~~~~~~~k~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~D~~~l~~~~e~ 242 (331) T 2hk2_A 163 DETSYAVPLESNHFEDDLAMIFVVINQHSKKVPSRYGMSLTRNTSRFYQYWLDHIDEDLAEAKAAIQDKDFKRLGEVIEE 242 (331) T ss_dssp TTTCEEEECCCTTGGGGEEEEEECCCCSSCCCCHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH T ss_pred CCCCEEEEEECCCCCCCCEEEEEECCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH T ss_conf 76633555404667875238999378545532455420001146608999998756779999999876999999999987 Q ss_pred HHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEEEECHHHHHHHHHHHHH Q ss_conf 99989998703899568657889999999999742896199997779817999558989999999763 Q gi|254781016|r 257 NALKMHATMIAASPPLLYWQKETIQGMERVWDARQQSIPIYFTLDAGPNLKLLFTHKIEETIKQFFPE 324 (355) Q Consensus 257 dal~mHa~~~~s~P~~~Y~~~~t~~ii~~v~~~R~~g~~v~fT~DAGPNv~il~~~~~~~~i~~~l~~ 324 (355) |+++||++|+++.||++||+++|.++++.++++|+.|.++|||+||||||++||++++.++|.+.+.+ T Consensus 243 d~~~~h~~~~~~~~~~~~~~~~t~~i~~~i~~~r~~G~~~~~~sgAGPtv~~l~~~~~~~~v~~~l~~ 310 (331) T 2hk2_A 243 NGLRMHATNLGSTPPFTYLVQESYDVMALVHECREAGYPCYFTMDAGPNVKILVEKKNKQQIIDKLLT 310 (331) T ss_dssp HHHHHHHHHTTSSSCCCSCCHHHHHHHHHHHHHHHTTCCEEEECCSSSCEEEEEEHHHHHHHHHHHTT T ss_pred HHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHHHHCCCCEEEEECCCHHEEEEECHHHHHHHHHHHHH T ss_conf 68877998753478611004205999999999985898499995676344999878689999999996 No 7 >1h72_C HK, homoserine kinase; transferase, threonine biosynthesis; HET: ANP; 1.8A {Methanococcus jannaschii} SCOP: d.14.1.5 d.58.26.1 PDB: 1fwl_A 1fwk_A* 1h73_A* 1h74_A* Probab=99.82 E-value=4.8e-18 Score=145.04 Aligned_cols=252 Identities=12% Similarity=0.088 Sum_probs=165.7 Q ss_pred CCCEEEEECCCCEEEEEEECCCCCCEEEECCEECCCCCHHHHHHHHHHHHHHHHCC--CEEEEEEECCCCCCCHHHHHHH Q ss_conf 98434681278107999971788857998787256652068999999742167619--4399998502332110123224 Q gi|254781016|r 50 NNSLSLSLGHLGTITHITVIDSDADCIILNGQKISSQSSFFKKTTQFCDLFRQFSK--VYFLIETSNNIPTKAGLASSAS 127 (355) Q Consensus 50 n~SiS~TL~~~~T~T~v~~~~~~~d~~~lnG~~~~~~~~~~~ri~~~l~~~r~~~~--~~~~I~S~N~fPtaaGLASSAS 127 (355) -+||+++|+.++++++++..+..+..+..+++..+..+. ...+.+..+.+++..+ ..++|+.++++|.++||+|||| T Consensus 18 fDslglAl~~~~d~i~v~~~~~~~i~i~~~~~~~~~~~~-~nl~~~a~~~~~~~~~~~~~~~I~i~k~IP~~aGLGssSa 96 (296) T 1h72_C 18 FDVFGLCLKEPYDVIEVEAIDDKEIIIEVDDKNIPTDPD-KNVAGIVAKKMIDDFNIGKGVKITIKKGVKAGSGLGSSAA 96 (296) T ss_dssp TTTEEEEEEEEEEEEEEEEESSSSEEEEESCTTSCCCTT-TSHHHHHHHHHHHHTTCCCEEEEEEECSSCTTSSSCHHHH T ss_pred CCHHHEEECCCCCEEEEEECCCCCEEEEECCCCCCCCHH-HHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCHH T ss_conf 214224006786689999968993999977877988735-4299999999999868999859999817987567686378 Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHCC---------CCCHHHHCCCCHHCCCCCCCCCCCEEEEECCCCCCCCEEEE Q ss_conf 799999999998188999889998865213---------53034310562002578987654413101566686421589 Q gi|254781016|r 128 GFAALTLALFRIYSIPEKSESLSRVARLGS---------GSACRSFYRGFCEWICGTDQNGMDSFAVPFNNQWPDLRIGL 198 (355) Q Consensus 128 gfAALa~Al~~~~~~~~~~~~lS~lARlGS---------GSA~RSi~GG~v~W~~g~~~~~sds~a~~~~~~~~dl~~~i 198 (355) ..||+..|++++++++++.+++..+|+.+. +...-+++||.+.+..+... . ......++++.+++ T Consensus 97 ~aaA~l~al~~~~~l~l~~~el~~ia~~~~~~~~g~~~~~~~~~~~~gG~~~~~~~~~~---~---~~~~~~~~~~~~v~ 170 (296) T 1h72_C 97 SSAGTAYAINELFKLNLDKLKLVDYASYGELASSGAKHADNVAPAIFGGFTMVTNYEPL---E---VLHIPIDFKLDILI 170 (296) T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHSSCCCTTHHHHHHCSEEEEEETTTT---E---EEEECCCSCCCEEE T ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCEEEECCCCCE---E---EEECCCCCCCEEEE T ss_conf 99999999998527998989999999975353048765434313897571230488730---3---44126876607999 Q ss_pred EEECCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHH Q ss_conf 99728766752105679887618568999973055099999999809999999999999998999870389956865788 Q gi|254781016|r 199 LKIIDREKKIGSREAMEITRHHSPFFTQWTQQISTDLAHIKQAIIDQDFIKLGEVAEKNALKMHATMIAASPPLLYWQKE 278 (355) Q Consensus 199 ~iv~~~~K~vsSt~gm~~~v~tSp~y~~r~~~~~~~~~~~~~ai~~~Df~~l~~i~e~dal~mHa~~~~s~P~~~Y~~~~ 278 (355) +. ++...++.-+......++.+..++.. ..+...+..++..+|.+.+....+.+ +.+....... .|+ T Consensus 171 ~~----~~~~~~t~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~-------~p~ 237 (296) T 1h72_C 171 AI----PNISINTKEAREILPKAVGLKDLVNN-VGKACGMVYALYNKDKSLFGRYMMSD-KVIEPVRGKL-------IPN 237 (296) T ss_dssp EC----CSSCCCHHHHHHTSCSCCCHHHHHHH-HHHHHHHHHHHHTTCHHHHHHHHTTC-CSSHHHHHTT-------STT T ss_pred EC----CCCCCCHHHHHHHHHCCCCHHHHHHH-HHHHHHHHHHHHCCCHHHHHHHHHHH-HHHHHHHHHH-------CHH T ss_conf 45----88420028777776402333556654-44356789988537787888766422-0299999871-------917 Q ss_pred HHHHHHHHHHHHHCCCEEEEEECCCCEEEEEECHHHHHHHHHHHHHC Q ss_conf 99999999997428961999977798179995589899999997632 Q gi|254781016|r 279 TIQGMERVWDARQQSIPIYFTLDAGPNLKLLFTHKIEETIKQFFPEI 325 (355) Q Consensus 279 t~~ii~~v~~~R~~g~~v~fT~DAGPNv~il~~~~~~~~i~~~l~~i 325 (355) ..++++. ++.....+..| ++||+|+.||..++.++|.+.+.+. T Consensus 238 ~~~i~~~---l~~ga~~a~mS-GsGptvfal~~~~~~~~i~~~l~~~ 280 (296) T 1h72_C 238 YFKIKEE---VKDKVYGITIS-GSGPSIIAFPKEEFIDEVENILRDY 280 (296) T ss_dssp HHHHHHH---HTTTEEEEEEC-TTSSCEEEEECGGGHHHHHHHHHHH T ss_pred HHHHHHH---HHCCCCEEEEE-CHHHEEEEEECHHHHHHHHHHHHHH T ss_conf 9999999---98799789998-7357599997777999999999985 No 8 >2x7i_A Mevalonate kinase; transferase; HET: CIT; 2.20A {Staphylococcus aureus} Probab=99.73 E-value=3e-14 Score=118.45 Aligned_cols=275 Identities=15% Similarity=0.120 Sum_probs=170.4 Q ss_pred CCCCEEEECCCCEEEEECCCCCCHHHCCCCCCCEEEEECCCCEEEEEEECCCCCC-EEEE---CCEECCCCCHHHHHHHH Q ss_conf 7763789748842488116776701175789843468127810799997178885-7998---78725665206899999 Q gi|254781016|r 20 INEKSSAFLPSNIALCKYWGKRDSKLNLPLNNSLSLSLGHLGTITHITVIDSDAD-CIIL---NGQKISSQSSFFKKTTQ 95 (355) Q Consensus 20 ~~~~~ta~ap~NIALIKYWGK~d~~l~lP~n~SiS~TL~~~~T~T~v~~~~~~~d-~~~l---nG~~~~~~~~~~~ri~~ 95 (355) -+.+..++||--|=|+= -+- .+==.+.|++++|..+++++++..+.... .+.. ++...+. .. .+.. T Consensus 3 ~~~~~~~~ApGKv~L~G---Eha---vv~G~~ala~aI~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~ 72 (308) T 2x7i_A 3 MTRKGYGESTGKIILIG---EHA---VTFGEPAIAVPFNAGKIKVLIEALESGNYSSIKSDVYDGMLYDA-PD---HLKS 72 (308) T ss_dssp -CCEEEEEEEEEEEEEE---BTT---CCTTSCEEEEEEEEEEEEEEEEECCTTCCCEEEEEECSSCCCCT-TS---CHHH T ss_pred CCCCEEEEEEEEEEEEE---CCE---EECCCCEEEEEEECCEEEEEEEECCCCCEEEEECCCCCCCCCCC-HH---HHHH T ss_conf 88638999803899996---777---76599789999857889999998478972564255445654444-27---9999 Q ss_pred HHHHHHHHCC--CEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH------CCCCC---HHHH Q ss_conf 9742167619--43999985023321101232247999999999981889998899988652------13530---3431 Q gi|254781016|r 96 FCDLFRQFSK--VYFLIETSNNIPTKAGLASSASGFAALTLALFRIYSIPEKSESLSRVARL------GSGSA---CRSF 164 (355) Q Consensus 96 ~l~~~r~~~~--~~~~I~S~N~fPtaaGLASSASgfAALa~Al~~~~~~~~~~~~lS~lARl------GSGSA---~RSi 164 (355) ++..+.+..+ ..+.|....++|.++||+||||..+|++.|++++++++++.+++..+|.. |.+|+ .-|+ T Consensus 73 ~~~~~~~~~~~~~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~~~~~~ls~~el~~la~~~E~~~~g~~sG~D~~~~~ 152 (308) T 2x7i_A 73 LVNRFVELNNITEPLAVTIQTNLPPSRGLGSSAAVAVAFVRASYDFLGKSLTKEELIEKANWAEQIAHGKPSGIDTQTIV 152 (308) T ss_dssp HHHHHHHHTTCCSCEEEEEEECCCTTSSSCHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHSSCCHHHHHHHH T ss_pred HHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHH T ss_conf 99999996499988599994789865787841788999999999851788668999999888887633788756337665 Q ss_pred CCCCHHCCCCCCCCCCCEEEEECCCCCCCCEEEEEEECCCCCCCCCCHHHHHH---HHHCHHHHHHHHHHHHHHHHHHHH Q ss_conf 05620025789876544131015666864215899972876675210567988---761856899997305509999999 Q gi|254781016|r 165 YRGFCEWICGTDQNGMDSFAVPFNNQWPDLRIGLLKIIDREKKIGSREAMEIT---RHHSPFFTQWTQQISTDLAHIKQA 241 (355) Q Consensus 165 ~GG~v~W~~g~~~~~sds~a~~~~~~~~dl~~~i~iv~~~~K~vsSt~gm~~~---v~tSp~y~~r~~~~~~~~~~~~~a 241 (355) +||.+.+..+... . ..+.+ + +.. +++++.+.+. +|..+... ....|.+..+++...+...++.++ T Consensus 153 ~gg~i~~~~~~~~---~--~~~~~--~-~~~--~~l~~tg~~~--~T~~~~~~v~~~~~~~~~~~~~~~i~~~~~~~~~a 220 (308) T 2x7i_A 153 SGKPVWFQKGHAE---T--LKTLS--L-DGY--MVVIDTGVKG--STRQAVHDVHKLCEDPQYMSHVKHIGKLVLRASDV 220 (308) T ss_dssp HTSCEEEETTEEE---E--CSCCC--B-SSE--EEEEECCC----CCSCCCC--------CCHHHHHHHHHHHHHHHHHH T ss_pred HCCEEEECCCCCC---C--CCCCC--C-CCE--EEECCCCCCC--CHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH T ss_conf 1250673278753---2--10013--3-430--4651589764--06999999999740606679999974789999999 Q ss_pred HHHCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHHCC-CEEEEEECCCC--EEEEEEC-HHHHHH Q ss_conf 9809999999999999998999870389956865788999999999974289-61999977798--1799955-898999 Q gi|254781016|r 242 IIDQDFIKLGEVAEKNALKMHATMIAASPPLLYWQKETIQGMERVWDARQQS-IPIYFTLDAGP--NLKLLFT-HKIEET 317 (355) Q Consensus 242 i~~~Df~~l~~i~e~dal~mHa~~~~s~P~~~Y~~~~t~~ii~~v~~~R~~g-~~v~fT~DAGP--Nv~il~~-~~~~~~ 317 (355) ++++|++.|++++-.+-..+..+-. -+|+--++ ++..++.| ..+-.| .||+ .+..|+. .+.++. T Consensus 221 l~~~d~~~lg~lm~~~~~~l~~l~v--------s~p~l~~l---~~~~~~~Ga~gakls-GaG~Gg~~~al~~~~~~a~~ 288 (308) T 2x7i_A 221 IEHHKFEALADIFNECHADLKALTV--------SHDKIEQL---MKIGKENGAIAGKLT-GAGRGGSMLLLAKDLPTAKN 288 (308) T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHSC--------CCHHHHHH---HHHHHHTTCSEEEES-BTTTCSSEEEEESSHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCC--------CCHHHHHH---HHHHHHCCCCEEEEE-CCCCCCEEEEEECCHHHHHH T ss_conf 9865778999999999999987178--------98899999---999997899589997-77852269999798789999 Q ss_pred HHHHHHHCCCC Q ss_conf 99997632100 Q gi|254781016|r 318 IKQFFPEITII 328 (355) Q Consensus 318 i~~~l~~i~~~ 328 (355) |.+.+.+.+.. T Consensus 289 i~~~l~~~g~~ 299 (308) T 2x7i_A 289 IVKAVEKAGAA 299 (308) T ss_dssp HHHHHHHTTCS T ss_pred HHHHHHHCCCC T ss_conf 99999976995 No 9 >3hul_A HSK, HK, homoserine kinase; structural genomics, putative homoserine kinase, THRB, amino-acid biosynthesis, ATP-binding, cytoplasm; 2.19A {Listeria monocytogenes} Probab=99.70 E-value=2.2e-15 Score=126.46 Aligned_cols=249 Identities=15% Similarity=0.062 Sum_probs=157.6 Q ss_pred CCCEEEEECCCCEEEEEEECCCCCCEEEECC-EECCCCCHHHHHHHHHHH-HHHHHCCCEEEEEEECCCCCCCHHHHHHH Q ss_conf 9843468127810799997178885799878-725665206899999974-21676194399998502332110123224 Q gi|254781016|r 50 NNSLSLSLGHLGTITHITVIDSDADCIILNG-QKISSQSSFFKKTTQFCD-LFRQFSKVYFLIETSNNIPTKAGLASSAS 127 (355) Q Consensus 50 n~SiS~TL~~~~T~T~v~~~~~~~d~~~lnG-~~~~~~~~~~~ri~~~l~-~~r~~~~~~~~I~S~N~fPtaaGLASSAS 127 (355) -++|++.+| +|.+.+++..++ ...+..+. ...+..+. .-+.+.+. .+... ..++|..+.++|.++||+|||| T Consensus 18 fd~lg~Ai~-l~d~v~v~~~~~-~~~i~~~~~~~~~~d~~--nli~~~~~~~~~~~--~~~~I~i~k~IP~gaGLGssSa 91 (298) T 3hul_A 18 FDSCGLALT-LYLTLDIGAEAD-SWYIEHNIGGGIPHDET--NVIIETALNLAPNL--TPHHLVMTCDIPPARGLGSSSA 91 (298) T ss_dssp TTTEEEEEE-EEEEEEEEEECS-SCEEECCCCTTCCSSTT--SHHHHHHHHHCTTC--CCEEEEEEECSCTTSSSSHHHH T ss_pred HHHEEEECC-CCEEEEEEECCC-CEEEEECCCCCCCCCCH--HHHHHHHHHHHCCC--CCCEEEEEECCCCCCCCCCCHH T ss_conf 255156010-885999998389-55999378677999952--69999999863437--8837999726877668785288 Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCC---HHHHCCCCHHCCCCCCCCCCCEEEEECCCCCCCCEEEEEEECCC Q ss_conf 799999999998188999889998865213530---34310562002578987654413101566686421589997287 Q gi|254781016|r 128 GFAALTLALFRIYSIPEKSESLSRVARLGSGSA---CRSFYRGFCEWICGTDQNGMDSFAVPFNNQWPDLRIGLLKIIDR 204 (355) Q Consensus 128 gfAALa~Al~~~~~~~~~~~~lS~lARlGSGSA---~RSi~GG~v~W~~g~~~~~sds~a~~~~~~~~dl~~~i~iv~~~ 204 (355) ..+|+..|++++++++++.+++..+++.+.|+. +.+++||++.+..+..+ .....+.. +++..+++..... T Consensus 92 ~aaA~l~al~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~~~---~~~~~vi~~~~~~ 165 (298) T 3hul_A 92 AVVAGIELANTLAELNLSKEEKVRIAAEIEGHPDNVAPAVLGNWVVGAKLDGE---DFYVRHLF---PDCALIAFIPKAE 165 (298) T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHSCSTTHHHHHHCSEEEEEEETTE---EEEEEECC---C-CEEEEEECCCC T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCEEEECCCEEEEECCCC---EEEEECCC---CCCCEEEEECCCC T ss_conf 99999999999728777767889886434556788763997583699965885---68993368---7641799946834 Q ss_pred CCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHH Q ss_conf 66752105679887618568999973055099999999809999999999999998999870389956865788999999 Q gi|254781016|r 205 EKKIGSREAMEITRHHSPFFTQWTQQISTDLAHIKQAIIDQDFIKLGEVAEKNALKMHATMIAASPPLLYWQKETIQGME 284 (355) Q Consensus 205 ~K~vsSt~gm~~~v~tSp~y~~r~~~~~~~~~~~~~ai~~~Df~~l~~i~e~dal~mHa~~~~s~P~~~Y~~~~t~~ii~ 284 (355) .||..+...... .+..............+..++.++|++.++.....+ .+|. |....+.|+..++++ T Consensus 166 ----~st~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~--~~~~------~~~~~l~p~l~~l~~ 232 (298) T 3hul_A 166 ----LLTSESRGVLPD-TLPFKEAVQASSIANVMIAAILRNDMTLAGEMMERD--LWHE------KYRSQLVPHLAQIRD 232 (298) T ss_dssp ----CC--------CC-EEEHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHTCC--CC-----------CTTGGGHHHHHH T ss_pred ----CCCCEEEEECCC-CCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH--CCCH------HHHHHHCHHHHHHHH T ss_conf ----551121220102-366566655444567888766338899998653101--0006------789885615899999 Q ss_pred HHHHHHHCCCEEEEEECCCCEEEEEECHHHHHHHHHHHHHCC Q ss_conf 999974289619999777981799955898999999976321 Q gi|254781016|r 285 RVWDARQQSIPIYFTLDAGPNLKLLFTHKIEETIKQFFPEIT 326 (355) Q Consensus 285 ~v~~~R~~g~~v~fT~DAGPNv~il~~~~~~~~i~~~l~~i~ 326 (355) .+++.|-..+.-..+||.|+.||.+++.+.|.+.|.+.+ T Consensus 233 ---~~~~~Ga~ga~lSGsGptvfal~~~~~a~~v~~~l~~~~ 271 (298) T 3hul_A 233 ---VAKNQGAYAACLSGAGPTVLVFAPRNLANKLQTSLQTLE 271 (298) T ss_dssp ---HHHTTTCCEEEECTTSSCEEEEECGGGHHHHHHHHHTTC T ss_pred ---HHHHCCCCEEEEECCCCCEEEEECHHHHHHHHHHHHHCC T ss_conf ---998499938999450151799977999999999998659 No 10 >2oi2_A Mevalonate kinase; enzyme-inhibitor complex, transferase; HET: DP6; 2.50A {Streptococcus pneumoniae} Probab=99.59 E-value=2.4e-11 Score=98.16 Aligned_cols=266 Identities=15% Similarity=0.107 Sum_probs=159.8 Q ss_pred EEEECCCCEEEEECCCCCCHHHCCCCCCCEEEEECCCCEEEEEEECCCCCCEEEECCEECCCCCHHHHHHHHHHHHHHHH Q ss_conf 78974884248811677670117578984346812781079999717888579987872566520689999997421676 Q gi|254781016|r 24 SSAFLPSNIALCKYWGKRDSKLNLPLNNSLSLSLGHLGTITHITVIDSDADCIILNGQKISSQSSFFKKTTQFCDLFRQF 103 (355) Q Consensus 24 ~ta~ap~NIALIKYWGK~d~~l~lP~n~SiS~TL~~~~T~T~v~~~~~~~d~~~lnG~~~~~~~~~~~ri~~~l~~~r~~ 103 (355) .++.||-.|=|+= -+-.-+ =.|.|++.++..+.+.++.. .+......+ .+.....+..+++++.. T Consensus 6 ~~~~ApGKi~L~G---EHavv~---G~~aIa~ai~~~~~~~~~~~--~~~~~~~~~------~~~~~~~v~~~l~~~~~- 70 (292) T 2oi2_A 6 GVGQAHSKIILIG---EHAVVY---GYPAISLPLLEVEVTCKVVP--AESPWRLYE------EDTLSMAVYASLEYLNI- 70 (292) T ss_dssp EEEEEEEEEEEEC---TTGGGG---TCCEEEEEEEEEEEEEEEEE--CSSCCCCCC------CSHHHHHHHHHHHHHTC- T ss_pred EEEEEEEEEEEEE---CCEECC---CCCEEEEEECEEEEEEEEEE--CCCCCEECC------CCHHHHHHHHHHHHHCC- T ss_conf 6999732689995---174406---98569988751499999998--788752146------74153899999998289- Q ss_pred CCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHC------CCC---CHHHHCCCCHHCCCC Q ss_conf 19439999850233211012322479999999999818899988999886521------353---034310562002578 Q gi|254781016|r 104 SKVYFLIETSNNIPTKAGLASSASGFAALTLALFRIYSIPEKSESLSRVARLG------SGS---ACRSFYRGFCEWICG 174 (355) Q Consensus 104 ~~~~~~I~S~N~fPtaaGLASSASgfAALa~Al~~~~~~~~~~~~lS~lARlG------SGS---A~RSi~GG~v~W~~g 174 (355) ....++|....++|.++||+||||..+|++.|++++++.+++.+++..+|+.. .+| ..-+++||.+.-... T Consensus 71 ~~~g~~i~i~s~iP~g~GLgSSaA~~va~~~al~~~~~~~l~~~el~~la~~~E~~~~g~~sG~d~~~~~~gg~~~~~~~ 150 (292) T 2oi2_A 71 TEACIRCEIDSAIPEKRGMGSSAAISIAAIRAVFDYYQADLPHDVLEILVNRAEMIAHMNPSGLDAKTCLSDQPIRFIKN 150 (292) T ss_dssp SCCCEEEEEC----CCGGGSCHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHTTCCCCSHHHHHHTCSSCEEEETT T ss_pred CCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCEEEECCC T ss_conf 98876999977899988978057899999999999877349999999999987653257886557537982881896058 Q ss_pred CCCCCCCEEEEECCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH Q ss_conf 98765441310156668642158999728766752105679887618568999973055099999999809999999999 Q gi|254781016|r 175 TDQNGMDSFAVPFNNQWPDLRIGLLKIIDREKKIGSREAMEITRHHSPFFTQWTQQISTDLAHIKQAIIDQDFIKLGEVA 254 (355) Q Consensus 175 ~~~~~sds~a~~~~~~~~dl~~~i~iv~~~~K~vsSt~gm~~~v~tSp~y~~r~~~~~~~~~~~~~ai~~~Df~~l~~i~ 254 (355) . ....++.+ + +. .+++++.+.+ .++++......+..+.....++...+...++.+|++++|++.|++++ T Consensus 151 ~-----~~~~l~~~--~-~~--~~~i~~~g~~-~~T~~~v~~v~~~~~~~~~~~~~i~~~~~~~~~al~~~d~~~lg~lm 219 (292) T 2oi2_A 151 V-----GFTELEMD--L-SA--YLVIADTGVY-GHTREAIQVVQNKGKDALPFLHALGELTQQAEIAISQKDAEGLGQIL 219 (292) T ss_dssp T-----EEEECCCC--C-SC--EEEEEECSSC-CCHHHHHHHHHHTGGGGHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH T ss_pred C-----CEEECCCC--C-CE--EEEEEECCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH T ss_conf 8-----71332345--6-33--6999957987-43499999999860555667777889999999877516188999999 Q ss_pred HHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHHCC-CEEEEEECCCC--EEEEEEC-HHHHHHHHHHHHHCCC Q ss_conf 999998999870389956865788999999999974289-61999977798--1799955-8989999999763210 Q gi|254781016|r 255 EKNALKMHATMIAASPPLLYWQKETIQGMERVWDARQQS-IPIYFTLDAGP--NLKLLFT-HKIEETIKQFFPEITI 327 (355) Q Consensus 255 e~dal~mHa~~~~s~P~~~Y~~~~t~~ii~~v~~~R~~g-~~v~fT~DAGP--Nv~il~~-~~~~~~i~~~l~~i~~ 327 (355) -.+ |..+.+-. + -+|+-- +.++..++.| +.+-.| .||+ .+..|++ +++.++|.+.+.+.+. T Consensus 220 ~~~----h~~l~~l~--v--s~p~ld---~li~~a~~~Galgakls-GaG~Gg~~~al~~~~~~a~~i~~~l~~~G~ 284 (292) T 2oi2_A 220 SQA----HLHLKEIG--V--SSLEAD---SLVETALSHGALGAKMS-GGGLGGCIIALVTNLTHAQELAERLEEKGA 284 (292) T ss_dssp HHH----HHHHHHTT--C--CCHHHH---HHHHHHHTTTCSEEEEE-SSSSSSEEEEEESCHHHHHHHHHHHHHHTC T ss_pred HHH----HHHHHHHC--C--CCHHHH---HHHHHHHHCCCCEEEEE-CCCCCCEEEEEECCHHHHHHHHHHHHHCCC T ss_conf 999----99999758--9--988999---99999987899689996-888746699998888999999999997699 No 11 >2pg9_A Phosphomevalonate kinase; GHMP kinase superfamily, transferase; HET: PMV ANP; 1.90A {Streptococcus pneumoniae} PDB: 1k47_A* 3gon_A* Probab=99.56 E-value=5.6e-11 Score=95.61 Aligned_cols=265 Identities=14% Similarity=0.092 Sum_probs=158.7 Q ss_pred CCCCCEEEEECCCCEEEEEEECCCCCCEEEECCEECC------CCCHHHHHHHH-HHHHHHHHC--CCEEEEEEECCCCC Q ss_conf 7898434681278107999971788857998787256------65206899999-974216761--94399998502332 Q gi|254781016|r 48 PLNNSLSLSLGHLGTITHITVIDSDADCIILNGQKIS------SQSSFFKKTTQ-FCDLFRQFS--KVYFLIETSNNIPT 118 (355) Q Consensus 48 P~n~SiS~TL~~~~T~T~v~~~~~~~d~~~lnG~~~~------~~~~~~~ri~~-~l~~~r~~~--~~~~~I~S~N~fPt 118 (355) |=.+.|++.+|. +++.+ +.+.+..++..+..... ....+..+... +.++++... ...+.|....++|. T Consensus 23 ~G~~al~~AI~~-~~~v~--v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~i~s~ip~ 99 (337) T 2pg9_A 23 PGQLALIKDIPI-YMRAE--IAFSDSYRIYSDMFDFAVDLRPNPDYSLIQETIALMGDFLAVRGQNLRPFSLAIYGKMER 99 (337) T ss_dssp TTCEEEEEEEEE-EEEEE--EEECSSCEEEETTSSSCBCSSCCTTTHHHHHHHHHHHHHHHHTTCCCCCEEEEEECCSEE T ss_pred CCCCEEEEEECC-EEEEE--EEECCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCC T ss_conf 999499999502-49999--999999789984788654057787518999999999999997199988649999852687 Q ss_pred CC---HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH------CCCC---CHHHHCCCCHHCCCCCCCCCCC----- Q ss_conf 11---01232247999999999981889998899988652------1353---0343105620025789876544----- Q gi|254781016|r 119 KA---GLASSASGFAALTLALFRIYSIPEKSESLSRVARL------GSGS---ACRSFYRGFCEWICGTDQNGMD----- 181 (355) Q Consensus 119 aa---GLASSASgfAALa~Al~~~~~~~~~~~~lS~lARl------GSGS---A~RSi~GG~v~W~~g~~~~~sd----- 181 (355) ++ ||+||||...|++.|+.++++++++..++..+|.. |.|| -+-|.|||++............ T Consensus 100 ~~~~~GLgSSAA~~va~~~al~~~~~~~l~~~~l~~la~~~E~~~~g~~sg~D~~~~~~Gg~i~~~~~~~~~~~~~~~~~ 179 (337) T 2pg9_A 100 EGKKFGLGSSGSVVVLVVKALLALYNLSVDQNLLFKLTSAVLLKRGDNGSMGDLACIAAEDLVLYQSFDRQKVAAWLEEE 179 (337) T ss_dssp TTEECSSCHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTTCCSCSHHHHHHHHTSCEEEECCCHHHHHHHHHHS T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEECCHHHHHHHHCCC T ss_conf 76767765089999999999998518753399999999999987458988645477717973999936824422331133 Q ss_pred EEEEECCCCCC--------CCEEEEEEECCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH Q ss_conf 13101566686--------4215899972876675210567988761856899997305509999999980999999999 Q gi|254781016|r 182 SFAVPFNNQWP--------DLRIGLLKIIDREKKIGSREAMEITRHHSPFFTQWTQQISTDLAHIKQAIIDQDFIKLGEV 253 (355) Q Consensus 182 s~a~~~~~~~~--------dl~~~i~iv~~~~K~vsSt~gm~~~v~tSp~y~~r~~~~~~~~~~~~~ai~~~Df~~l~~i 253 (355) ........+|+ ....-.+++..+.. .+|..+...+.. .+++..++.......++.+|++++|++.|+++ T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tg~~--~~t~~~v~~v~~-~~~~~~~~~~~~~v~~~~~al~~~d~~~l~~l 256 (337) T 2pg9_A 180 NLATVLERDWGFSISQVKPTLECDFLVGWTKEV--AVSSHMVQQIKQ-NINQNFLTSSKETVVSLVEALEQGKSEKIIEQ 256 (337) T ss_dssp CHHHHHHSCCCCEEEECCCCSCCEEEEEECCCC--CCHHHHHHHHGG-GCCHHHHHHHHHHHHHHHHHHHHTCHHHHHHH T ss_pred CCCEEEECCCCCEEEEECCCCCCCEEEEECCCC--CCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH T ss_conf 300033047873269804887752899956996--225999999987-77789999999999999999873889999999 Q ss_pred HHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHHCCCEEEEEECCC--CEEEEEEC-HHHHHHHHHHHHHCCCC Q ss_conf 99999989998703899568657889999999999742896199997779--81799955-89899999997632100 Q gi|254781016|r 254 AEKNALKMHATMIAASPPLLYWQKETIQGMERVWDARQQSIPIYFTLDAG--PNLKLLFT-HKIEETIKQFFPEITII 328 (355) Q Consensus 254 ~e~dal~mHa~~~~s~P~~~Y~~~~t~~ii~~v~~~R~~g~~v~fT~DAG--PNv~il~~-~~~~~~i~~~l~~i~~~ 328 (355) +..+-..|+.+-... .+|+.-+++ ...++.|..+-.| .|| +.+..|++ +++.+.|++.+.+.++. T Consensus 257 m~~~~~~l~~l~~~i------~~p~l~~l~---~~a~~~g~~akls-GAG~Gg~~ial~~~~~~~~~l~~~~~~~Gi~ 324 (337) T 2pg9_A 257 VEVASKLLEGLSTDI------YTPLLRQLK---EASQDLQAVAKSS-GAGGGDCGIALSFDAQSTKTLKNRWADLGIE 324 (337) T ss_dssp HHHHHHHHHHHCTTT------CCHHHHHHH---HTTTTSSEEEEEC-TTCSSSEEEEEECSHHHHHHHHHHHHHTTCE T ss_pred HHHHHHHHHHCCCCC------CCHHHHHHH---HHHHHCCCEEEEC-CCCCHHEEEEEECCHHHHHHHHHHHHHCCCE T ss_conf 999999998278777------998999999---9998199599991-5261556999988889999999999977994 No 12 >2hfs_A Mevalonate kinase, putative; GHMP kinase, trypanosomatid parasite, transferase; 1.75A {Leishmania major} PDB: 2hfu_A* Probab=99.54 E-value=8.5e-11 Score=94.35 Aligned_cols=252 Identities=15% Similarity=0.152 Sum_probs=146.2 Q ss_pred CCCEEEEECCCCEEEEEEECCCCCCEEEECCEECCCCCH-------HHHHHHHHHHHHHH-HCCCEEEEEEECCCCCCCH Q ss_conf 984346812781079999717888579987872566520-------68999999742167-6194399998502332110 Q gi|254781016|r 50 NNSLSLSLGHLGTITHITVIDSDADCIILNGQKISSQSS-------FFKKTTQFCDLFRQ-FSKVYFLIETSNNIPTKAG 121 (355) Q Consensus 50 n~SiS~TL~~~~T~T~v~~~~~~~d~~~lnG~~~~~~~~-------~~~ri~~~l~~~r~-~~~~~~~I~S~N~fPtaaG 121 (355) .+.|++.+|. +++.+++..++... +.++......... ....+...++.++. .....+.|....++|.++| T Consensus 34 ~~al~~AI~~-~~~v~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~~i~i~s~iP~g~G 111 (332) T 2hfs_A 34 AEAIVAGISE-YTECRLEINPGVPG-LQVDDQRPAIPGYIAQKRDEQIKAHQLVLDHLKVDLSGDGLKMFIGGPLVPSSG 111 (332) T ss_dssp CCEEEEEEEE-EEEEEEEEETTCCS-EEEEECCCCCTTHHHHHHHHHHHHHHHHHHHTTBCCSSSEEEEEEECSCCCCTT T ss_pred CCEEEEEEEC-CEEEEEEECCCCCC-EEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCC T ss_conf 7689999307-07999998689985-697457766754312233367799999999973137899879999479987778 Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHC--------CC-CCHHHHCCCCHHCCCCCCCCCCCEEEEECCCCCC Q ss_conf 12322479999999999818899988999886521--------35-3034310562002578987654413101566686 Q gi|254781016|r 122 LASSASGFAALTLALFRIYSIPEKSESLSRVARLG--------SG-SACRSFYRGFCEWICGTDQNGMDSFAVPFNNQWP 192 (355) Q Consensus 122 LASSASgfAALa~Al~~~~~~~~~~~~lS~lARlG--------SG-SA~RSi~GG~v~W~~g~~~~~sds~a~~~~~~~~ 192 (355) |+||||..+|+..|+.++++.+++.+++..+|... || -.+-|+|||++........ ..-.++... + T Consensus 112 LGSSaA~~va~~~al~~~~~~~ls~~el~~~A~~~E~~~~g~~sG~D~~as~~Gg~~~~~~~~~~----~~~~~~~~~-~ 186 (332) T 2hfs_A 112 IGASASDVVAFSRALSELYQLNLTDEEVNLSAFVGEGGYHGTPSGADNTAATYGGLILYRRQNGK----SVFKPIAFQ-Q 186 (332) T ss_dssp SCHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHGGGSSSCCCSHHHHHHHHCEEEEEEECSSS----EEEEEECCC-S T ss_pred CCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEECCCC----EEEEECCCC-C T ss_conf 66088999999999987775058999999999999875158987643789976986999957995----799984555-5 Q ss_pred CCEEEEEEECCCCCCCCCCHHHHHHH-----HHCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHC Q ss_conf 42158999728766752105679887-----6185689999730550999999998099999999999999989998703 Q gi|254781016|r 193 DLRIGLLKIIDREKKIGSREAMEITR-----HHSPFFTQWTQQISTDLAHIKQAIIDQDFIKLGEVAEKNALKMHATMIA 267 (355) Q Consensus 193 dl~~~i~iv~~~~K~vsSt~gm~~~v-----~tSp~y~~r~~~~~~~~~~~~~ai~~~Df~~l~~i~e~dal~mHa~~~~ 267 (355) ++ .+++++.+.+. ||.-+...+ +....+...++...+-..++.+++..+|++.|++++..+ |..+.. T Consensus 187 ~~--~l~l~~tg~~~--~T~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~al~~~~~~~lg~lm~~~----~~~l~~ 258 (332) T 2hfs_A 187 RL--YLVVVGTGINA--STAKVVNDVHKMKQQQPVQFKRLYDNYTHIVSQAREALQKGDLQRLGQLMNAN----HDLCRQ 258 (332) T ss_dssp CE--EEEEEECSCCC--CHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH----HHHHHH T ss_pred CE--EEEEEECCCCC--CHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH T ss_conf 14--79998189762--24999976445555342777766667899999999877500045678999999----999985 Q ss_pred CCCCEEEECHHHHHHHHHHHHHHHCC-CEEEEEECCCC--EEEEEECH-HHHHHHHHHHHH Q ss_conf 89956865788999999999974289-61999977798--17999558-989999999763 Q gi|254781016|r 268 ASPPLLYWQKETIQGMERVWDARQQS-IPIYFTLDAGP--NLKLLFTH-KIEETIKQFFPE 324 (355) Q Consensus 268 s~P~~~Y~~~~t~~ii~~v~~~R~~g-~~v~fT~DAGP--Nv~il~~~-~~~~~i~~~l~~ 324 (355) - . .-+|+.-+++ +..++.| ..+-.| .||+ .+..|+.. ++.+.|.+.+.+ T Consensus 259 l--~--vs~p~l~~l~---~~a~~~Galgakls-GaG~Gg~~ial~~~~~~~~~i~~~l~~ 311 (332) T 2hfs_A 259 I--D--VSCRELESIV---QTCRTYGALGAKLS-GTGRGGIAVALAASSDQRDAIVKGLKA 311 (332) T ss_dssp T--T--CCCHHHHHHH---HHHHHTTCSEEEEE-SSCSSSEEEEEESSHHHHHHHHHHHHH T ss_pred C--C--CCCHHHHHHH---HHHHHCCCCEEEEC-CCCCCCEEEEEECCHHHHHHHHHHHHH T ss_conf 3--8--9988999999---99997899489992-789866499998787889999999999 No 13 >3k17_A LIN0012 protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics, NEW YORK SGX research center for structural genomics; HET: PGE; 2.10A {Listeria innocua} Probab=99.49 E-value=4.1e-10 Score=89.53 Aligned_cols=292 Identities=14% Similarity=0.111 Sum_probs=166.8 Q ss_pred CCCCEEEECCCCEEEEECCCCCCHHHCC-CCCCCEEEEECCCCEEEEEEECCCCCCEEEECCEE-----------CCCC- Q ss_conf 7763789748842488116776701175-78984346812781079999717888579987872-----------5665- Q gi|254781016|r 20 INEKSSAFLPSNIALCKYWGKRDSKLNL-PLNNSLSLSLGHLGTITHITVIDSDADCIILNGQK-----------ISSQ- 86 (355) Q Consensus 20 ~~~~~ta~ap~NIALIKYWGK~d~~l~l-P~n~SiS~TL~~~~T~T~v~~~~~~~d~~~lnG~~-----------~~~~- 86 (355) ...+..++||-.|-|+ |-+ ..+ |-.+.|++++| .+++.+++ +.+++++.+.... .... T Consensus 3 ~~~~i~v~aPGKv~L~---GEh---~v~~~G~~al~~AI~-~~~~v~i~--~~~~~~i~i~~~~~~~~~~~~~~~~~~~~ 73 (365) T 3k17_A 3 LKNKLQVKIPGKLYVA---GEY---AVVESGHTAILTAVN-RYITLTLE--DSERNELWIPHYENPVSWPIGGELKPDGE 73 (365) T ss_dssp --CCEEEEEEEEEEEE---CTT---GGGSTTCEEEEEEEE-EEEEEEEE--ECSSCEEECTTCSSCBCCCTTSCCCCSCG T ss_pred CCCEEEEEEEEEEEEE---ECC---EEECCCCEEEEEEEC-CEEEEEEE--ECCCCEEEEEECCCCEEEEECCCCCCCCC T ss_conf 8887999996599999---868---981599669999981-50999999--98998799996688705885365566665 Q ss_pred -CHHHHHHHHHHHHHHHHCC---CEEEEEEECCCC----CCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH--- Q ss_conf -2068999999742167619---439999850233----21101232247999999999981889998899988652--- Q gi|254781016|r 87 -SSFFKKTTQFCDLFRQFSK---VYFLIETSNNIP----TKAGLASSASGFAALTLALFRIYSIPEKSESLSRVARL--- 155 (355) Q Consensus 87 -~~~~~ri~~~l~~~r~~~~---~~~~I~S~N~fP----taaGLASSASgfAALa~Al~~~~~~~~~~~~lS~lARl--- 155 (355) ..+.......+..+....+ ..+.|...-++| .++||+||||-..|++.|+..+++..++..++..+|+. T Consensus 74 ~~~~~~~~~~~~~~~l~~~~~~~~g~~i~i~s~ip~~~g~gsGLgSSaA~~va~~~al~~~~~~~~~~~~l~~~a~~~E~ 153 (365) T 3k17_A 74 HWTFTAEAINIATTFLKSEGIELTPVKMVIETELIDQSGAKYGLGSSAAATVAVINALMTKFYPEISMLKKFKLAALSHL 153 (365) T ss_dssp GGHHHHHHHHHHHHHHHHTTCCCCCEEEEEEESSBCTTSCBCSSCHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHH T ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH T ss_conf 11689999999999999809998983599987526888867646799999999999999850543217888899999998 Q ss_pred ---CCCC---CHHHHCCCCHHCCCCCCCC-----CCCEEEEECCCCCCCCEE--------EEEEECCCCCCCCCCHHHHH Q ss_conf ---1353---0343105620025789876-----544131015666864215--------89997287667521056798 Q gi|254781016|r 156 ---GSGS---ACRSFYRGFCEWICGTDQN-----GMDSFAVPFNNQWPDLRI--------GLLKIIDREKKIGSREAMEI 216 (355) Q Consensus 156 ---GSGS---A~RSi~GG~v~W~~g~~~~-----~sds~a~~~~~~~~dl~~--------~i~iv~~~~K~vsSt~gm~~ 216 (355) |.|| -+-|+|||++......... ............|+.+.+ ..++...+.+ .+|..+.. T Consensus 154 ~~~g~~sG~D~~~s~~GG~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~tg~~--~~t~~~v~ 231 (365) T 3k17_A 154 VVQGNGSCGDIASCMYGGWIAYTTFDQEWVKHRLAYKSLEWFMKEPWPMLQIETLEEPVPTFSVGWTGTP--VSTGKLVS 231 (365) T ss_dssp HHHSSCCSHHHHHHHHCSEEEEECCCHHHHHHHHTTSCHHHHHHSCCTTCEEEEECCCSSEEEEEECSCC--CCHHHHHH T ss_pred HHCCCCCHHHHHHHHCCCEEEEEECCCCCEEEECCCCCCCEEECCCCCHHHHHHHHHHHHCEEEEECCCC--CCHHHHHH T ss_conf 7446986021488873983999817840102211346630232378623557765413420067516996--44399999 Q ss_pred HHHH----CH-HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHH Q ss_conf 8761----85-689999730550999999998099999999999999989998703899568657889999999999742 Q gi|254781016|r 217 TRHH----SP-FFTQWTQQISTDLAHIKQAIIDQDFIKLGEVAEKNALKMHATMIAASPPLLYWQKETIQGMERVWDARQ 291 (355) Q Consensus 217 ~v~t----Sp-~y~~r~~~~~~~~~~~~~ai~~~Df~~l~~i~e~dal~mHa~~~~s~P~~~Y~~~~t~~ii~~v~~~R~ 291 (355) .+.. -+ .+..-+........++.++++.+|++.|++++..+-..|..+....... ..+|+--++++.. ++ T Consensus 232 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~~~d~~~~g~lm~~~~~~l~~~~~~~~~~--vs~~~l~~lv~~a---~~ 306 (365) T 3k17_A 232 QIHAFKQEDSKNYQHFLTRNNEIMKQIIQAFHTKDEELLYSSIKENRRILQELGTKAGVN--IETSLLKELADSA---EN 306 (365) T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHTCC--CSCHHHHHHHHHH---HH T ss_pred HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCC--CCCHHHHHHHHHH---HH T ss_conf 999865426487765788887889999997631689999999999999999622215876--5899999999999---86 Q ss_pred CCCEEEEEECCC--CEEEEEEC-HHHHHHHHHHHHHCCCC Q ss_conf 896199997779--81799955-89899999997632100 Q gi|254781016|r 292 QSIPIYFTLDAG--PNLKLLFT-HKIEETIKQFFPEITII 328 (355) Q Consensus 292 ~g~~v~fT~DAG--PNv~il~~-~~~~~~i~~~l~~i~~~ 328 (355) .|..+-.| .|| +.+..|++ +++.+.|.+.+.+.++. T Consensus 307 ~g~~ak~t-GAG~Ggc~~al~~~~~~~~~l~~~~~~~g~~ 345 (365) T 3k17_A 307 MGGAGKSS-GSGGGDCGIAFSKTKELAEKLVNEWEKLGIK 345 (365) T ss_dssp TTSEEEEC-TTCSSSEEEEEESSHHHHHHHHHHHHHTTCE T ss_pred CCEEEEEC-CCCCCCEEEEEECCHHHHHHHHHHHHHCCCE T ss_conf 79089984-6065058999988889999999999987997 No 14 >1kkh_A Mevalonate kinase; mixed beta sheet, phosphate-binding loop, beta-alpha-beta, transferase; 2.40A {Methanocaldococcus jannaschii} SCOP: d.14.1.5 d.58.26.3 PDB: 1vis_A Probab=99.49 E-value=3.2e-11 Score=97.32 Aligned_cols=274 Identities=18% Similarity=0.167 Sum_probs=153.2 Q ss_pred CCEEEECCCCEEEEECCCCCCHHHCCCCCCCEEEEECCCCEEEEEEECCCCCCEEEECCE-----------EC-CCCC-- Q ss_conf 637897488424881167767011757898434681278107999971788857998787-----------25-6652-- Q gi|254781016|r 22 EKSSAFLPSNIALCKYWGKRDSKLNLPLNNSLSLSLGHLGTITHITVIDSDADCIILNGQ-----------KI-SSQS-- 87 (355) Q Consensus 22 ~~~ta~ap~NIALIKYWGK~d~~l~lP~n~SiS~TL~~~~T~T~v~~~~~~~d~~~lnG~-----------~~-~~~~-- 87 (355) .+-.+.||-.|=|. |-+-. + ==.++|++++| .+++.+++ +.+++++.++.. .. ...+ T Consensus 4 ~~~~v~aPgki~L~---GEh~v-~--~G~~al~~aI~-~~~~v~i~--~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~ 74 (317) T 1kkh_A 4 SHMIIETPSKVILF---GEHAV-V--YGYRAISMAID-LTSTIEIK--ETQEDEIILNLNDLNKSLGLNLNEIKNINPNN 74 (317) T ss_dssp CCEEEEEEEEEEEE---CTTGG-G--GTCCEEEEEEE-EEEEEEEE--ECCSSEEEEEETTTTEEEEEETTTGGGCCGGG T ss_pred CEEEEEEEEEEEEE---CCCCE-E--CCCCEEEEEEC-CEEEEEEE--ECCCCEEEEEECCCCCCEEEEHHHCCCCCCCC T ss_conf 83999931099998---16713-4--79988999962-65999999--98899799997478862688601132358554 Q ss_pred -HHHHHH----HHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHC------ Q ss_conf -068999----999742167619439999850233211012322479999999999818899988999886521------ Q gi|254781016|r 88 -SFFKKT----TQFCDLFRQFSKVYFLIETSNNIPTKAGLASSASGFAALTLALFRIYSIPEKSESLSRVARLG------ 156 (355) Q Consensus 88 -~~~~ri----~~~l~~~r~~~~~~~~I~S~N~fPtaaGLASSASgfAALa~Al~~~~~~~~~~~~lS~lARlG------ 156 (355) .-...+ ...++.+.......+.|....++|.++||+||||..+|+..|++++++++++..++..+|... T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~g~~i~i~s~iP~g~GLGSSsA~~va~~~al~~~~~~~l~~~el~~la~~~E~~~~~ 154 (317) T 1kkh_A 75 FGDFKYCLCAIKNTLDYLNIEPKTGFKINISSKIPISCGLGSSASITIGTIKAVSGFYNKELKDDEIAKLGYMVEKEIQG 154 (317) T ss_dssp SGGGHHHHHHHHHHHHHTTCCCCSCEEEEEEECSCSSSSSCHHHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHSS T ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCC T ss_conf 42289999999999998287889866999967898877874568999999887644410158878877666889862288 Q ss_pred --CC-CCHHHHCCCCHHCCCCCCCCCCCEEEEECCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHH Q ss_conf --35-303431056200257898765441310156668642158999728766752105679887618568999973055 Q gi|254781016|r 157 --SG-SACRSFYRGFCEWICGTDQNGMDSFAVPFNNQWPDLRIGLLKIIDREKKIGSREAMEITRHHSPFFTQWTQQIST 233 (355) Q Consensus 157 --SG-SA~RSi~GG~v~W~~g~~~~~sds~a~~~~~~~~dl~~~i~iv~~~~K~vsSt~gm~~~v~tSp~y~~r~~~~~~ 233 (355) || ...-+.|||++........ .........+++....++.. ... . .++..+...+....-....+.... T Consensus 155 ~~s~~D~~~~~~gg~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~-~~~-~-~~t~~~~~~~~~~~~~~~~~~~i~- 226 (317) T 1kkh_A 155 KASITDTSTITYKGILEIKNNKFR----KIKGEFEEFLKNCKFLIVYA-EKR-K-KKTAELVNEVAKIENKDEIFKEID- 226 (317) T ss_dssp SCCSHHHHHHHHCSEEEESSSCEE----EECHHHHHHHHTCCEEEEEE-ECC-C-SCHHHHHHHHHTCTTHHHHHHHHH- T ss_pred CCCCCCHHHHCCCCEEEEECCCCE----EECCCHHHCCHHHHHHHHHH-CCC-C-CCHHHHHHHHHHHHHHHHHHHHHH- T ss_conf 888763034305865996179613----61120200111122220020-674-3-142989998887766778999988- Q ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHHCCCEEEEEECCC--CEEEEEEC Q ss_conf 0999999998099999999999999989998703899568657889999999999742896199997779--81799955 Q gi|254781016|r 234 DLAHIKQAIIDQDFIKLGEVAEKNALKMHATMIAASPPLLYWQKETIQGMERVWDARQQSIPIYFTLDAG--PNLKLLFT 311 (355) Q Consensus 234 ~~~~~~~ai~~~Df~~l~~i~e~dal~mHa~~~~s~P~~~Y~~~~t~~ii~~v~~~R~~g~~v~fT~DAG--PNv~il~~ 311 (355) ..+.+|++.+|++.|++++..+...+..+. .-+|+--++++. .++.|..+-.| .|| +.+..|+. T Consensus 227 --~~~~eal~~~d~~~l~~~m~~~~~~~~~~~--------i~~~~l~~l~~~---~~~~g~~ak~s-GaG~Gg~~~~~~~ 292 (317) T 1kkh_A 227 --KVIDEALKIKNKEDFGKLMTKNHELLKKLN--------ISTPKLDRIVDI---GNRFGFGAKLT-GAGGGGCVIILVN 292 (317) T ss_dssp --HHHHHHHHCCSHHHHHHHHHHHHHHHHTTT--------CCCHHHHHHHHH---HHHHSSEEEEC-SSSSSEEEEEECC T ss_pred --HHHHHHHHHCCHHHHHHHHHHHHHHHHHHC--------CCCHHHHHHHHH---HHHCCCEEEEE-CCCCCCEEEEEEC T ss_conf --878887650005789999999799998728--------998899999999---98379589980-7886388999988 Q ss_pred HHHHHHHHHHHHHCC Q ss_conf 898999999976321 Q gi|254781016|r 312 HKIEETIKQFFPEIT 326 (355) Q Consensus 312 ~~~~~~i~~~l~~i~ 326 (355) +++.+.+.+.+.+.+ T Consensus 293 ~~~~~~~~~~~~~~~ 307 (317) T 1kkh_A 293 EEKEKELLKELNKED 307 (317) T ss_dssp GGGHHHHHHHHHTSS T ss_pred HHHHHHHHHHHHHCC T ss_conf 157999999999749 No 15 >3k85_A D-glycero-D-manno-heptose 1-phosphate kinase; bacteriodes thetaiotaomicron, protein structure initiative II(PSI II), nysgxrc; 2.28A {Bacteroides thetaiotaomicron} Probab=99.34 E-value=8.4e-11 Score=94.39 Aligned_cols=282 Identities=14% Similarity=0.089 Sum_probs=156.8 Q ss_pred EEEECCCCEEEEE----CCCCCCHHHCCCCCCCEEEEECCCCEEEEEEECCCCCCEEEECC------------EECCCCC Q ss_conf 7897488424881----16776701175789843468127810799997178885799878------------7256652 Q gi|254781016|r 24 SSAFLPSNIALCK----YWGKRDSKLNLPLNNSLSLSLGHLGTITHITVIDSDADCIILNG------------QKISSQS 87 (355) Q Consensus 24 ~ta~ap~NIALIK----YWGK~d~~l~lP~n~SiS~TL~~~~T~T~v~~~~~~~d~~~lnG------------~~~~~~~ 87 (355) ..++||--|=|+= ||...... --.-|++++| .+|+.+++..++ +.+.++- ...... T Consensus 4 i~~raP~RI~l~G~~tD~~~~~~~~----gG~via~AId-~~~~v~v~~~~~--~~i~i~~~d~~~~~~~~~~~~~~~~- 75 (357) T 3k85_A 4 VRSKAPLRLGLAGGGSDVSPYSDIY----GGLILNATIN-LYAYCTIEETNS--GRIEINAYDAQCCKSYLSMSQLEID- 75 (357) T ss_dssp EEEEEEEEEEEECTTTTSTTHHHHT----CEEEEEEEEE-EEEEEEEEECSS--SEEEEEETTTTEEEEEECCSSCCCC- T ss_pred EEEECCEEEEEECCCCCCCHHHCCC----CCEEEEEEEC-CCEEEEEEECCC--CEEEEEECCCCCEEEEECCCCCCCC- T ss_conf 9998999789870763681133448----9799999986-818999999999--9699996588851698124312346- Q ss_pred HHHHHHHHHHHHHHHH---CCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHC-------- Q ss_conf 0689999997421676---19439999850233211012322479999999999818899988999886521-------- Q gi|254781016|r 88 SFFKKTTQFCDLFRQF---SKVYFLIETSNNIPTKAGLASSASGFAALTLALFRIYSIPEKSESLSRVARLG-------- 156 (355) Q Consensus 88 ~~~~ri~~~l~~~r~~---~~~~~~I~S~N~fPtaaGLASSASgfAALa~Al~~~~~~~~~~~~lS~lARlG-------- 156 (355) ....-+...+..+-.. ....+.|....+.|.++||+||||-..|++.|+.++++.+++..++..+|..+ T Consensus 76 ~~~~~i~~~~~~~~~~~~~~~~g~~i~i~S~iP~gsGLGSSAA~~Va~~~al~~~~~~~l~~~~l~~~a~~~E~~~~g~~ 155 (357) T 3k85_A 76 GEASLIKGVYNRIIRDYRLEPKSFKITTYNDAPAGSGLGTSSTMVVCILKAFIEWLSLPLGDYETSRLAYEIERKDLGLS 155 (357) T ss_dssp SSSHHHHHHHHHHHHHTTCCCCCEEEEEEESSCSSSSSCHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHTTTCCC T ss_pred CHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC T ss_conf 60678999999999972788987599996578688898840688898899988655451153889999998766542898 Q ss_pred CC--CCHHHHCCCCHHCCCCCCCCCCCEEEEE-CCCC---CCCCEEEEEEECCCCCCCCCCHHHH----HHHHHCHHHHH Q ss_conf 35--3034310562002578987654413101-5666---8642158999728766752105679----88761856899 Q gi|254781016|r 157 SG--SACRSFYRGFCEWICGTDQNGMDSFAVP-FNNQ---WPDLRIGLLKIIDREKKIGSREAME----ITRHHSPFFTQ 226 (355) Q Consensus 157 SG--SA~RSi~GG~v~W~~g~~~~~sds~a~~-~~~~---~~dl~~~i~iv~~~~K~vsSt~gm~----~~v~tSp~y~~ 226 (355) +| -.+-+.+||+........ ....+. .... .+.+....+++.++.... |+.... +..+..+.+.. T Consensus 156 ~G~~D~~~~~~GG~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~tg~~~~-s~~~~~~~~~~~~~~~~~~~~ 230 (357) T 3k85_A 156 GGKQDQYAAAFGGFNYMEFLQN----DLVIVNPLKMKRWIVDELESSMVLYFTGRSRS-SAAIINEQKKNTSEGNQTAIE 230 (357) T ss_dssp CCSHHHHHHHHCSEEEEEEETT----TEEEEEEECCCHHHHHHHHHTEEEECC----------------------CCTTH T ss_pred CCCCCCHHHCCCCCCEEEECCC----CCEEECCCCCCHHHHHHHHHCCEEEECCCCCH-HHHHHHHHHHHHHHHHHHHHH T ss_conf 7765406451676215774058----84377112320445555430332542475330-776667888766430188998 Q ss_pred HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHHCCCEEEEEECCCCE- Q ss_conf 9973055099999999809999999999999998999870389956865788999999999974289619999777981- Q gi|254781016|r 227 WTQQISTDLAHIKQAIIDQDFIKLGEVAEKNALKMHATMIAASPPLLYWQKETIQGMERVWDARQQSIPIYFTLDAGPN- 305 (355) Q Consensus 227 r~~~~~~~~~~~~~ai~~~Df~~l~~i~e~dal~mHa~~~~s~P~~~Y~~~~t~~ii~~v~~~R~~g~~v~fT~DAGPN- 305 (355) -+........++..++.++|++.|++++..+...+..+. +.+. +|.. -+.+...++.|.-.+--..||.- T Consensus 231 ~~~~~~~~~~~~~~a~~~~d~~~lg~lm~~~~~~~~~l~----~~vs--~~~l---d~l~~~a~~~Ga~gaKlsGAGgGG 301 (357) T 3k85_A 231 AMHKIKQSAIDTKLALLKGDVGEFARILGEGWENKKKMA----GAIT--NPMI---QEAFDVATGAGAMAGKVSGAGGGG 301 (357) T ss_dssp HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHTTC--------------------CCSCTTTTSCCSEEEECCCC--- T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHC----CCCC--CHHH---HHHHHHHHHCCCEEEEEEEECHHH T ss_conf 887776666777876630269999999999999877641----4799--8999---999999976899699997306102 Q ss_pred -EEEEECHHHHHHHHHHHHHCCC Q ss_conf -7999558989999999763210 Q gi|254781016|r 306 -LKLLFTHKIEETIKQFFPEITI 327 (355) Q Consensus 306 -v~il~~~~~~~~i~~~l~~i~~ 327 (355) +.+|+++++.+++.+.+.+.+. T Consensus 302 ~~~~l~~~~~~~~~~~~l~~~~~ 324 (357) T 3k85_A 302 FIMFVVEPTRKEEVVRALNNLNG 324 (357) T ss_dssp CEEEECCHHHHHHHHHHHHTSSS T ss_pred EEEEEECHHHHHHHHHHHHHCCC T ss_conf 89999876459999999987798 No 16 >2cz9_A Probable galactokinase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.50A {Pyrococcus horikoshii} PDB: 2dei_A* 2dej_A* 1s4e_A* Probab=99.26 E-value=4.5e-08 Score=75.31 Aligned_cols=220 Identities=15% Similarity=0.093 Sum_probs=127.7 Q ss_pred HHHHHHHHHHHHHHC--CCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHC--------CC- Q ss_conf 899999974216761--9439999850233211012322479999999999818899988999886521--------35- Q gi|254781016|r 90 FKKTTQFCDLFRQFS--KVYFLIETSNNIPTKAGLASSASGFAALTLALFRIYSIPEKSESLSRVARLG--------SG- 158 (355) Q Consensus 90 ~~ri~~~l~~~r~~~--~~~~~I~S~N~fPtaaGLASSASgfAALa~Al~~~~~~~~~~~~lS~lARlG--------SG- 158 (355) ..-+...+..+.... ...+.|....++|.++||+||||--.|++.|+.++++.+++..++..+|... || T Consensus 68 ~~~~~~~~~~~~~~~~~~~G~~i~i~S~iP~gsGLgSSAA~~va~~~al~~~~~~~l~~~~l~~~a~~~E~~~~g~~~G~ 147 (350) T 2cz9_A 68 IDYVKGIFWVLKESDYEVGGIKGRVSGNLPLGAGLSSSASFEVGILETLDKLYNLKLDSLSKVLLAKKAENEFVGVPCGI 147 (350) T ss_dssp HHHHHHHHHHHHHTTCCCCEEEEEEECSCCTTSSSCHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTTCCCCCS T ss_pred HHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCC T ss_conf 99999999999970888888699995788888774408999999999999860788876999999999999760899870 Q ss_pred -CCHHHHCCCCHHCCCCCCCCCCCEEEEECCCCCCCCEEEEEEECCCCCCCCCCHHHHHHH------------------- Q ss_conf -303431056200257898765441310156668642158999728766752105679887------------------- Q gi|254781016|r 159 -SACRSFYRGFCEWICGTDQNGMDSFAVPFNNQWPDLRIGLLKIIDREKKIGSREAMEITR------------------- 218 (355) Q Consensus 159 -SA~RSi~GG~v~W~~g~~~~~sds~a~~~~~~~~dl~~~i~iv~~~~K~vsSt~gm~~~v------------------- 218 (355) ..+-+.+||+..+.-.. ....+...++++. ...+++++.+.+............ T Consensus 148 ~D~~a~~~G~~~~~~~~~-~~~~~~~~~~~~~-----~~~~ll~~sg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (350) T 2cz9_A 148 LDQFAVVFGREGNVIFLD-THTLDYEYIPFPK-----DVSILVFYTGVRRELASSEYAERKHIAEESLKILGKGSSKEVR 221 (350) T ss_dssp HHHHHHHHCCTTEEEEEE-TTTCCEEEEECCT-----TEEEEEEECSCC----CHHHHHHHHHHHHHHHHHTCSCGGGCC T ss_pred CHHHHHHCCCCCEEEECC-CCCCEEEEEECCC-----CCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH T ss_conf 058998658777699712-7986079974588-----7268998447401110457899999999999876320368899 Q ss_pred -----HHCHHHHHHHHH---HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHH Q ss_conf -----618568999973---055099999999809999999999999998999870389956865788999999999974 Q gi|254781016|r 219 -----HHSPFFTQWTQQ---ISTDLAHIKQAIIDQDFIKLGEVAEKNALKMHATMIAASPPLLYWQKETIQGMERVWDAR 290 (355) Q Consensus 219 -----~tSp~y~~r~~~---~~~~~~~~~~ai~~~Df~~l~~i~e~dal~mHa~~~~s~P~~~Y~~~~t~~ii~~v~~~R 290 (355) ...+.+..++.. -..+..+..++++++|++.+|++.-.+...|-..+--+ +|+--.++ +..+ T Consensus 222 ~~~~~~~~~~~~~~~~~v~~e~~~~~~~~~~~~~~d~~~~g~lm~~~~~~L~~~~~vs-------~~~ld~lv---~~a~ 291 (350) T 2cz9_A 222 EGELSKLPPLHRKFFGYIVRENARVLEVRDALKEGNVEEVGKILTTAHWDLAKNYEVS-------CKELDFFV---ERAL 291 (350) T ss_dssp GGGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCC-------CHHHHHHH---HHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCC-------CHHHHHHH---HHHH T ss_conf 9887777799999999999999999999987502789999999999999998720899-------68999999---9999 Q ss_pred HCCCEEEEEECCCCE--EEEEECHHHHHHHHHHHHHC Q ss_conf 289619999777981--79995589899999997632 Q gi|254781016|r 291 QQSIPIYFTLDAGPN--LKLLFTHKIEETIKQFFPEI 325 (355) Q Consensus 291 ~~g~~v~fT~DAGPN--v~il~~~~~~~~i~~~l~~i 325 (355) +.|.-.+=-..||-- +..|+++++.+.+.+.+.+- T Consensus 292 ~~Ga~GaKltGAG~GGc~iaL~~~~~~~~~~~~~~~~ 328 (350) T 2cz9_A 292 KLGAYGARLTGAGFGGSAIALVDKEDAETIGEEILRE 328 (350) T ss_dssp HTTCSEEEECSSCSSSEEEEEEEGGGHHHHHHHHHHH T ss_pred HCCCCEEEEECCCCCEEEEEEECHHHHHHHHHHHHHH T ss_conf 7799389982378872999997777899999999999 No 17 >2v8p_A 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; nucleotide-binding, isoprene biosynthesis, transferase, ATP-binding, non-mevalonate; HET: CDP ADP; 2.1A {Aquifex aeolicus} PDB: 2v2v_A* 2v2q_A* 2v34_A* 2v2z_A* 2vf3_A* Probab=99.26 E-value=7e-10 Score=87.94 Aligned_cols=253 Identities=15% Similarity=0.044 Sum_probs=143.2 Q ss_pred CCCCEEEECCCCEEEEECCCCCCHHHCCCCCCCEEEEECCCCEEEEEEECCCCCCEEEECCEECCCCCHHHHHHHHHHHH Q ss_conf 77637897488424881167767011757898434681278107999971788857998787256652068999999742 Q gi|254781016|r 20 INEKSSAFLPSNIALCKYWGKRDSKLNLPLNNSLSLSLGHLGTITHITVIDSDADCIILNGQKISSQSSFFKKTTQFCDL 99 (355) Q Consensus 20 ~~~~~ta~ap~NIALIKYWGK~d~~l~lP~n~SiS~TL~~~~T~T~v~~~~~~~d~~~lnG~~~~~~~~~~~ri~~~l~~ 99 (355) ..-+..|-|-.|+.| +=.|||+.-+ -.-.|+-.++| ++-+-+++ ++ ...+.-+. ..+.++. -+.+.++. T Consensus 3 ~mi~~~apAKiNL~L-~i~~kr~dGy--H~i~s~~~~i~-l~D~i~i~--~~-~~~~~~~~-~~~~~~N---li~ka~~~ 71 (271) T 2v8p_A 3 HMIKVLSPAKINLGL-WVLGRLPSGY--HEILTLYQEIP-FYDEIYIR--EG-VLRVETNI-GIPQEEN---LVYKGLRE 71 (271) T ss_dssp CCEEEEEEEEEEEEE-EEEEECTTSC--EEEEEEEEEEE-EEEEEEEE--ES-SCEEEESS-CCCTTTC---HHHHHHHH T ss_pred CEEEEEEEEEEEEEE-EECCCCCCCC--CEEEEEEEEEC-CCCEEEEE--EC-CCEEECCC-CCCCCHH---HHHHHHHH T ss_conf 519998416897545-5178589997--72578999926-87399999--68-70776888-9996311---99999999 Q ss_pred HHHHCCC--EEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHCCCCHHCCCCCCC Q ss_conf 1676194--39999850233211012322479999999999818899988999886521353034310562002578987 Q gi|254781016|r 100 FRQFSKV--YFLIETSNNIPTKAGLASSASGFAALTLALFRIYSIPEKSESLSRVARLGSGSACRSFYRGFCEWICGTDQ 177 (355) Q Consensus 100 ~r~~~~~--~~~I~S~N~fPtaaGLASSASgfAALa~Al~~~~~~~~~~~~lS~lARlGSGSA~RSi~GG~v~W~~g~~~ 177 (355) +++..+. .++|.-++++|.++||+||||..||...+++++++++++.+++-.+|....+-+.-.++||.+. ..|.++ T Consensus 72 ~~~~~~~~~~~~I~i~K~IP~~~GLGggSs~aaa~l~~ln~l~~~~ls~~el~~la~~ig~dvp~fl~g~~~~-~~g~Ge 150 (271) T 2v8p_A 72 FERITGIEINYSIFIQKNIPPGAGLGGGSSNLAVVLKKVNELLGSPLSEEELRELVGSISADAPFFLLGKSAI-GRGKGE 150 (271) T ss_dssp HHHHHCCCCCEEEEEECCSCTTSSSCHHHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHCTTTGGGGTCSEEE-EETTTT T ss_pred HHHHHCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCCCCCC-CCCCCC T ss_conf 7797599987489997699887877743278999999999850677423667765302478878433687600-048853 Q ss_pred CCCCEEEEECCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH Q ss_conf 65441310156668642158999728766752105679887618568999973055099999999809999999999999 Q gi|254781016|r 178 NGMDSFAVPFNNQWPDLRIGLLKIIDREKKIGSREAMEITRHHSPFFTQWTQQISTDLAHIKQAIIDQDFIKLGEVAEKN 257 (355) Q Consensus 178 ~~sds~a~~~~~~~~dl~~~i~iv~~~~K~vsSt~gm~~~v~tSp~y~~r~~~~~~~~~~~~~ai~~~Df~~l~~i~e~d 257 (355) ....++.. +++.+++++ .+. ..||.-+-.......+. ..........++..+|++.+..--|.- T Consensus 151 ---~i~~~~~~---~~~~~vlv~--P~~--~~sT~~a~~~l~~~~~~------~~~~~~~~~~~l~~~~~~~~~n~l~~~ 214 (271) T 2v8p_A 151 ---VLEPVETE---ISGKITLVI--PQV--SSSTGRVYSSLREEHFV------TPEYAEEKIQRIISGEVEEIENVLGDI 214 (271) T ss_dssp ---EEEECCCC---CCSEEEEEE--CSS--CCCHHHHHHTCCTTSCC------CHHHHHHHHHHHHTTCGGGCCBHHHHH T ss_pred ---EEEEEEEC---CCCCEEEEE--CCC--CCCCHHHHHHHHHHHCC------CCHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf ---79997615---775279981--565--77517899765133034------520058899988753189999888889 Q ss_pred HHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEEEECHHH-HHHH Q ss_conf 998999870389956865788999999999974289619999777981799955898-9999 Q gi|254781016|r 258 ALKMHATMIAASPPLLYWQKETIQGMERVWDARQQSIPIYFTLDAGPNLKLLFTHKI-EETI 318 (355) Q Consensus 258 al~mHa~~~~s~P~~~Y~~~~t~~ii~~v~~~R~~g~~v~fT~DAGPNv~il~~~~~-~~~i 318 (355) +.++ .|+-.++.+ .+++.+..++.| .+||.|+.||..++ ++.+ T Consensus 215 ~~~l--------------~P~i~~i~~---~l~~~~~~~~lS-GSGstvfal~~~~~~~~~a 258 (271) T 2v8p_A 215 AREL--------------YPEINEVYR---FVEYLGFKPFVS-GSGSTVYFFGGASEELKKA 258 (271) T ss_dssp HHHH--------------CHHHHHHHH---HHHHTTCCCEEC-TTSSCEEESSCCCHHHHHH T ss_pred HHHH--------------CHHHHHHHH---HHHHCCCCEEEE-CCCHHHEEEECCHHHHHHH T ss_conf 9986--------------909999999---998389988997-8443216898999999998 No 18 >1kvk_A MK, mevalonate kinase; RMK, ATP, GHMP, transferase; HET: ATP; 2.40A {Rattus norvegicus} SCOP: d.14.1.5 d.58.26.3 PDB: 2r42_A* 2r3v_A Probab=98.99 E-value=5.6e-07 Score=67.63 Aligned_cols=194 Identities=18% Similarity=0.163 Sum_probs=109.5 Q ss_pred EEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC---------------HHHHHHHHHH------CCCCC---HH Q ss_conf 399998502332110123224799999999998188999---------------8899988652------13530---34 Q gi|254781016|r 107 YFLIETSNNIPTKAGLASSASGFAALTLALFRIYSIPEK---------------SESLSRVARL------GSGSA---CR 162 (355) Q Consensus 107 ~~~I~S~N~fPtaaGLASSASgfAALa~Al~~~~~~~~~---------------~~~lS~lARl------GSGSA---~R 162 (355) .+.|....+.|.++||+||||..+|+..|+..+++.... .+++..+|.. |.+|+ .- T Consensus 128 g~~i~i~S~iP~g~GLgSSaA~~va~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~la~~~E~~~~g~~~G~d~~~ 207 (395) T 1kvk_A 128 SLDIMVWSELPPGAGLGSSAAYSVCVAAALLTACEEVTNPLKDRGSIGSWPEEDLKSINKWAYEGERVIHGNPSGVDNSV 207 (395) T ss_dssp CEEEEEEESSCTTSSSCHHHHHHHHHHHHHHHHTTSSCCGGGGCCSEECCCHHHHHHHHHHHHHHHHHHHSSCCSHHHHH T ss_pred CEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHH T ss_conf 86999964477324765128999999999999845444431000000111104799999999999988658885035778 Q ss_pred HHCCCCHHCCCCCCCCCCCEEEEECCCCCCCCEEEEEEECCCCCCCCCCHHHHHHH-----HHCHHHHHHHHHHHHHHHH Q ss_conf 31056200257898765441310156668642158999728766752105679887-----6185689999730550999 Q gi|254781016|r 163 SFYRGFCEWICGTDQNGMDSFAVPFNNQWPDLRIGLLKIIDREKKIGSREAMEITR-----HHSPFFTQWTQQISTDLAH 237 (355) Q Consensus 163 Si~GG~v~W~~g~~~~~sds~a~~~~~~~~dl~~~i~iv~~~~K~vsSt~gm~~~v-----~tSp~y~~r~~~~~~~~~~ 237 (355) +.+||+..|..... ......+++. +++++.+.+.. +..+...+ +....+..-.+....-..+ T Consensus 208 ~~~g~~~~~~~~~~---------~~~~~~~~~~--l~l~~t~~~~~--t~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~ 274 (395) T 1kvk_A 208 STWGGALRYQQGKM---------SSLKRLPALQ--ILLTNTKVPRS--TKALVAGVRSRLIKFPEIMAPLLTSIDAISLE 274 (395) T ss_dssp HHHCSEEEESSSCE---------EECSCCCCEE--EEEEECCCCCC--HHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHH T ss_pred HHCCCEEEEECCCC---------CCCCCCCCCC--EEEECCCCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 75588378512443---------2345676520--57832687650--27889999999986466799999999999999 Q ss_pred HHHHH-------HHCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHHCCCEEEEEECCCC--EEEE Q ss_conf 99999-------80999999999999999899987038995686578899999999997428961999977798--1799 Q gi|254781016|r 238 IKQAI-------IDQDFIKLGEVAEKNALKMHATMIAASPPLLYWQKETIQGMERVWDARQQSIPIYFTLDAGP--NLKL 308 (355) Q Consensus 238 ~~~ai-------~~~Df~~l~~i~e~dal~mHa~~~~s~P~~~Y~~~~t~~ii~~v~~~R~~g~~v~fT~DAGP--Nv~i 308 (355) +..++ ..+|+..+|++...+-..+..+ .. -+|+--++++ ..++.|..+-.| .||+ .+.. T Consensus 275 ~~~~l~~~~~~~~~~d~~~lg~lm~~~~~~l~~l--~v------s~peld~l~~---~a~~~g~gakls-GAG~GG~~ia 342 (395) T 1kvk_A 275 CERVLGEMAAAPVPEQYLVLEELMDMNQHHLNAL--GV------GHASLDQLCQ---VTAAHGLHSKLT-GAGGGGCGIT 342 (395) T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHH--TC------CCHHHHHHHH---HHHHTTCEEEEC-SSCSSSEEEE T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHC--CC------CCHHHHHHHH---HHHHCCCEEEEE-CCCCCCEEEE T ss_conf 9999998877665113455899999809988762--89------9899999999---998579689983-6677568999 Q ss_pred EECHHHHHH----HHHHHHHC Q ss_conf 955898999----99997632 Q gi|254781016|r 309 LFTHKIEET----IKQFFPEI 325 (355) Q Consensus 309 l~~~~~~~~----i~~~l~~i 325 (355) |++.+..+. +++.+.+. T Consensus 343 l~~~~~~~~~~~~~~~~~~~~ 363 (395) T 1kvk_A 343 LLKPGLERAKVEAAKQALTGC 363 (395) T ss_dssp EECTTCCHHHHHHHHHHHHHT T ss_pred EECCCCHHHHHHHHHHHHHHC T ss_conf 977850499999999999976 No 19 >2ww4_A 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; non-mevalonate pathway, isoprenoid biosynthesis, transferase; HET: ADP; 2.00A {Escherichia coli} PDB: 1oj4_A* Probab=98.94 E-value=8.4e-08 Score=73.41 Aligned_cols=247 Identities=14% Similarity=0.069 Sum_probs=132.2 Q ss_pred CCCCEEEEECCCCCCHHHCCCCCCCEEEEECCCCEEEEEEECCCCCCEEEECCEECC--CCCH-HHHHHHHHHHHHHHHC Q ss_conf 488424881167767011757898434681278107999971788857998787256--6520-6899999974216761 Q gi|254781016|r 28 LPSNIALCKYWGKRDSKLNLPLNNSLSLSLGHLGTITHITVIDSDADCIILNGQKIS--SQSS-FFKKTTQFCDLFRQFS 104 (355) Q Consensus 28 ap~NIALIKYWGK~d~~l~lP~n~SiS~TL~~~~T~T~v~~~~~~~d~~~lnG~~~~--~~~~-~~~ri~~~l~~~r~~~ 104 (355) |-.|+.| +=.|||..-+ =.=.|+=.++ +++-+-+++ ++++.++.+.|.... ..+. ..+.+..+.+...... T Consensus 9 AKiNL~L-~V~~kr~dGy--H~l~s~~~~i-~L~D~I~i~--~~~~~~i~i~~~~~~~~~~~n~~~ka~~~l~~~~~~~~ 82 (283) T 2ww4_A 9 AKLNLFL-YITGQRADGY--HTLQTLFQFL-DYGDTISIE--LRDDGDIRLLTPVEGVEHEDNLIVRAARLLMKTAADSG 82 (283) T ss_dssp EEEEEEE-EEEEECTTSC--EEEEEEEEEE-EEEEEEEEE--EESSSCEEECSCBTTBCGGGSHHHHHHHHHHHHHHHTT T ss_pred CEEECCE-EECCCCCCCC--CEEEEEEEEE-CCCCEEEEE--ECCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHH T ss_conf 2370663-1088799997--5036788970-788599999--98999889970776577310168999999999865543 Q ss_pred ----CCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHCCCCHHCCCCCCCCCC Q ss_conf ----9439999850233211012322479999999999818899988999886521353034310562002578987654 Q gi|254781016|r 105 ----KVYFLIETSNNIPTKAGLASSASGFAALTLALFRIYSIPEKSESLSRVARLGSGSACRSFYRGFCEWICGTDQNGM 180 (355) Q Consensus 105 ----~~~~~I~S~N~fPtaaGLASSASgfAALa~Al~~~~~~~~~~~~lS~lARlGSGSA~RSi~GG~v~W~~g~~~~~s 180 (355) ...+.|.-+.|+|.++||+||||..||...+++++++.+++.+++..+|....+-..-.++||.+. ..|.++. T Consensus 83 ~~~~~~~~~I~i~KnIP~gaGLGggSs~aAa~l~~ln~l~~~~l~~~~l~~~a~~igsDVp~~l~g~~a~-~~g~Ge~-- 159 (283) T 2ww4_A 83 RLPTGSGANISIDKRLPMGGGLGGGSSNAATVLVALNHLWQCGLSMDELAEMGLTLGADVPVFVRGHAAF-AEGVGEI-- 159 (283) T ss_dssp CSCTTCEEEEEEECCCC-CTTSCHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHTTCTTHHHHHHTBCEE-EETTTTE-- T ss_pred HCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCEECCCCEE-ECCCCCE-- T ss_conf 1277897699997489877667757179999999999971788308999998732157874322486167-4389867-- Q ss_pred CEEEEECCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH Q ss_conf 41310156668642158999728766752105679887618568999973055099999999809999999999999998 Q gi|254781016|r 181 DSFAVPFNNQWPDLRIGLLKIIDREKKIGSREAMEITRHHSPFFTQWTQQISTDLAHIKQAIIDQDFIKLGEVAEKNALK 260 (355) Q Consensus 181 ds~a~~~~~~~~dl~~~i~iv~~~~K~vsSt~gm~~~v~tSp~y~~r~~~~~~~~~~~~~ai~~~Df~~l~~i~e~dal~ 260 (355) + .+.. .+++.. +++.. +-..||.-+-..... +. .........+..+....|++.... + T Consensus 160 --i-~~~~--~~~~~~--vlv~P--~~~iST~~~~~~~~~-~~-----~~~~~~~~~~~~~~~~Ndle~~~~-------~ 217 (283) T 2ww4_A 160 --L-TPVD--PPEKWY--LVAHP--GVSIPTPVIFKDPEL-PR-----NTPKRSIETLLKCEFSNDCEVIAR-------K 217 (283) T ss_dssp --E-EECC--CCCCEE--EEECC--SCCCCHHHHHTCTTS-CC-----CCCCCCHHHHHTSCCCBTTHHHHH-------H T ss_pred --E-EECC--CCCCCC--EEECC--CCCCCHHHHHHCCCC-CC-----CCCCCCHHHHHHHHHHCCHHHHHH-------H T ss_conf --6-4035--654320--67448--978772999970001-33-----774013999997654131899999-------8 Q ss_pred HHHHHHCCCCCEEEECHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEEEECH-HHHHHHHHHHHH Q ss_conf 9998703899568657889999999999742896199997779817999558-989999999763 Q gi|254781016|r 261 MHATMIAASPPLLYWQKETIQGMERVWDARQQSIPIYFTLDAGPNLKLLFTH-KIEETIKQFFPE 324 (355) Q Consensus 261 mHa~~~~s~P~~~Y~~~~t~~ii~~v~~~R~~g~~v~fT~DAGPNv~il~~~-~~~~~i~~~l~~ 324 (355) + .|+-.++.+ .+++.| .+..| .+||.|+.+|.. ++++++.+.+++ T Consensus 218 ~--------------~p~i~~i~~---~l~~~g-~~~mS-GSGstvFal~~~~~~a~~~~~~~~~ 263 (283) T 2ww4_A 218 R--------------FREVDAVLS---WLLEYA-PSRLT-GTGACVFAEFDTESEARQVLEQAPE 263 (283) T ss_dssp H--------------CHHHHHHHH---HHHTTS-CEEEC-TTSSCEEEEESSHHHHHHHHHHCCC T ss_pred H--------------CHHHHHHHH---HHHCCC-CEEEE-CHHHEEEEEECCHHHHHHHHHHCCC T ss_conf 6--------------869999999---985669-86862-6401110587999999999986404 No 20 >1uek_A 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase; non-mevalonate pathway, GHMP superfamily; 1.70A {Thermus thermophilus} SCOP: d.14.1.5 d.58.26.5 Probab=98.89 E-value=6.5e-08 Score=74.19 Aligned_cols=249 Identities=15% Similarity=0.075 Sum_probs=133.8 Q ss_pred EECCCCEEEEECCCCCCHHHCCCCCCCEEEEECCCCEEEEEEECCCCCCEEEECCEECCCCCHHHHHHHHHHHHHHHHCC Q ss_conf 97488424881167767011757898434681278107999971788857998787256652068999999742167619 Q gi|254781016|r 26 AFLPSNIALCKYWGKRDSKLNLPLNNSLSLSLGHLGTITHITVIDSDADCIILNGQKISSQSSFFKKTTQFCDLFRQFSK 105 (355) Q Consensus 26 a~ap~NIALIKYWGK~d~~l~lP~n~SiS~TL~~~~T~T~v~~~~~~~d~~~lnG~~~~~~~~~~~ri~~~l~~~r~~~~ 105 (355) |-|-.|..| +=-|||..-+ =--.|+=..+| ++-+-+++. .+ +.+.++|.. .++ .-|.+.++.+++..+ T Consensus 5 spAKINL~L-~i~~kr~dGy--H~i~s~~~~i~-l~D~i~i~~--~~-~~~~~~~p~--~~~---Nlv~ka~~~~~~~~~ 72 (275) T 1uek_A 5 APAKVNLGL-SVRFRREDGY--HELHTLFAPFS-LADRLVVEP--VS-SGLHFQGPY--GRE---NLAYRAASLYLEAAG 72 (275) T ss_dssp EEEEEEEEE-EEEEECTTSS--EEEEEEEEEEE-EEEEEEEEE--ES-SCEEEESTT--GGG---SHHHHHHHHHHHHTT T ss_pred CCCEECCCE-EECCCCCCCC--CEEEEEEEEEC-CCEEEEEEE--CC-CCCEECCCC--CCC---HHHHHHHHHHHHHHC T ss_conf 252073250-0078589997--52368999936-753999998--78-994786899--842---389999999888628 Q ss_pred C--EEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHCCCCHHCCCCCCCCCCCEE Q ss_conf 4--39999850233211012322479999999999818899988999886521353034310562002578987654413 Q gi|254781016|r 106 V--YFLIETSNNIPTKAGLASSASGFAALTLALFRIYSIPEKSESLSRVARLGSGSACRSFYRGFCEWICGTDQNGMDSF 183 (355) Q Consensus 106 ~--~~~I~S~N~fPtaaGLASSASgfAALa~Al~~~~~~~~~~~~lS~lARlGSGSA~RSi~GG~v~W~~g~~~~~sds~ 183 (355) . .++|.-++++|.++||+||||..||...++++.++..++..+ +|+.. ||-+..+++|...|..|.++. .. T Consensus 73 ~~~~~~I~i~K~IP~gaGLGggSs~aaa~l~~~~~~~~~~~~l~~---~a~~l-GsDvp~fl~g~~a~~~g~Ge~---l~ 145 (275) T 1uek_A 73 QPGGVRILLEKRIPEGAGLGGGSSDAAQVLLALQALYPAEVDLFA---LARTL-GADVPFFLLGRGAEARGVGER---LK 145 (275) T ss_dssp CCCEEEEEEECCSCSSSSSCHHHHHHHHHHHHHHHHSCSCCCHHH---HHHHH-CTTHHHHHHCSEEEEETTTTE---EE T ss_pred CCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHH---HHHHH-CCCCCCCCCCCCCEECCCCCE---EE T ss_conf 977769999858997676773579999999998764354047999---99972-877653116866311256420---26 Q ss_pred EEECCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH Q ss_conf 10156668642158999728766752105679887618568999973055099999999809999999999999998999 Q gi|254781016|r 184 AVPFNNQWPDLRIGLLKIIDREKKIGSREAMEITRHHSPFFTQWTQQISTDLAHIKQAIIDQDFIKLGEVAEKNALKMHA 263 (355) Q Consensus 184 a~~~~~~~~dl~~~i~iv~~~~K~vsSt~gm~~~v~tSp~y~~r~~~~~~~~~~~~~ai~~~Df~~l~~i~e~dal~mHa 263 (355) .+. .+++.+++++. + -..||.-+-+.+.-..+ .....+..+.+++..+|...+..--|.-+.+ T Consensus 146 ~~~----~~~~~~vlv~P--~--~~iST~~ay~~~~~~~~------~~~~~~~~~~~~l~~~~~~~~~NdLe~~~~~--- 208 (275) T 1uek_A 146 PLA----LPPVPAVVFFP--G--LRVPTPLVYRAVRPEDF------GPDLPVEAILEALARGEEPPYWNSLEGPAFR--- 208 (275) T ss_dssp EEC----CCCEEEEEEEC--C--CCCCHHHHHHTCCGGGC------CCCCCHHHHHHHHHHTCCCSCCBTTHHHHHH--- T ss_pred EEC----CCCCCEEEECC--C--CCCCHHHHHHHHHHHHC------CCCHHHHHHHHHHHHHHHHHHHCCHHHHHHH--- T ss_conf 711----46542255147--7--67776999987424315------8512478899987642056654554679988--- Q ss_pred HHHCCCCCEEEECHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEEEEC-HHHHHHHHHHHHH Q ss_conf 870389956865788999999999974289619999777981799955-8989999999763 Q gi|254781016|r 264 TMIAASPPLLYWQKETIQGMERVWDARQQSIPIYFTLDAGPNLKLLFT-HKIEETIKQFFPE 324 (355) Q Consensus 264 ~~~~s~P~~~Y~~~~t~~ii~~v~~~R~~g~~v~fT~DAGPNv~il~~-~~~~~~i~~~l~~ 324 (355) +.|+-.++.+.+ ++.|-..+.=-.+||.|+.||. +++++++.+.++. T Consensus 209 -----------l~P~i~~i~~~l---~~~ga~~~~lSGSGst~fal~~~~~~a~~~~~~l~~ 256 (275) T 1uek_A 209 -----------LFPELKEVRGRM---RALGLRGVLMSGSGSAFFGLAEGPDHARRAAEALRA 256 (275) T ss_dssp -----------HCTHHHHHHHHH---HHTTCEEEEECTTSSCEEEECSSHHHHHHHHHHHTT T ss_pred -----------HCHHHHHHHHHH---HHCCCCEEEEECHHHCEEEEECCHHHHHHHHHHHHH T ss_conf -----------685999999999---967998699988412468998999999999999877 No 21 >1pie_A Galactokinase; galactose, galactosemia, transferase; HET: GLA; 2.10A {Lactococcus lactis} SCOP: d.14.1.5 d.58.26.7 Probab=98.89 E-value=4.8e-06 Score=61.15 Aligned_cols=204 Identities=16% Similarity=0.120 Sum_probs=114.4 Q ss_pred EEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHC--------CC--CCHHHHCCCCHHCCCCCC Q ss_conf 39999850233211012322479999999999818899988999886521--------35--303431056200257898 Q gi|254781016|r 107 YFLIETSNNIPTKAGLASSASGFAALTLALFRIYSIPEKSESLSRVARLG--------SG--SACRSFYRGFCEWICGTD 176 (355) Q Consensus 107 ~~~I~S~N~fPtaaGLASSASgfAALa~Al~~~~~~~~~~~~lS~lARlG--------SG--SA~RSi~GG~v~W~~g~~ 176 (355) .+.|....++|.++||.|||+--.|++.|+..+++..++..++..++... +| ..+-|++|+.-.+..- + T Consensus 141 G~~i~v~s~vP~gsGLsSSAAl~va~~~al~~~~~~~~~~~~l~~l~~~~E~~~~g~~~G~~Dq~as~~g~~~~~~~~-~ 219 (419) T 1pie_A 141 GFELLIKGEIPTASGLSSSASLELLVGVVLDDLFNLNVPRLELVQLGQKTENDYIGVNSGILDQFAIGFGEVKKAIEL-D 219 (419) T ss_dssp CEEEEEEECSCTTSSSCHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTTCCCCCSHHHHHHHHCBTTEEEEE-E T ss_pred CEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCEEEHH-H T ss_conf 769999557886667663688888999899998589876788999999999863178876314788850753301000-0 Q ss_pred CCCCCEEEEECCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHH---------------------------------CHH Q ss_conf 76544131015666864215899972876675210567988761---------------------------------856 Q gi|254781016|r 177 QNGMDSFAVPFNNQWPDLRIGLLKIIDREKKIGSREAMEITRHH---------------------------------SPF 223 (355) Q Consensus 177 ~~~sds~a~~~~~~~~dl~~~i~iv~~~~K~vsSt~gm~~~v~t---------------------------------Sp~ 223 (355) .........+. ..+++ .+++++.+.+....+......+.. ..- T Consensus 220 ~~~~~~~~~~~--~~~~~--~~vi~~s~~~~~~~~~~~~~r~~e~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (419) T 1pie_A 220 CNTLKYEMVPV--ELRDY--DIVIMNTNKPRALTESKYNERFAETREALKRMQTRLDIQSLGELSNEEFDANTDLIGDET 295 (419) T ss_dssp TTTCCEEEEEC--CCTTE--EEEEEECCCCCCTTCHHHHHHHHHHHHHHHHHHHHCCCSSGGGCCHHHHHHTGGGTCCHH T ss_pred CCCCCCCCCCC--CCCCC--EEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHH T ss_conf 14543323556--88786--799962586553431123455888899999987741732077887988999875037788 Q ss_pred HHHHHHH---HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHH-CCCEEEEE Q ss_conf 8999973---0550999999998099999999999999989998703899568657889999999999742-89619999 Q gi|254781016|r 224 FTQWTQQ---ISTDLAHIKQAIIDQDFIKLGEVAEKNALKMHATMIAASPPLLYWQKETIQGMERVWDARQ-QSIPIYFT 299 (355) Q Consensus 224 y~~r~~~---~~~~~~~~~~ai~~~Df~~l~~i~e~dal~mHa~~~~s~P~~~Y~~~~t~~ii~~v~~~R~-~g~~v~fT 299 (355) ...|... -..+..+...+++++|++.||++.. +.|..+.+.. .+. +|+.-+++ ...++ .|.--+=- T Consensus 296 ~~~ra~~~~~e~~rv~~~~~al~~~d~~~lG~Lm~----esh~sL~~~~-~vS--~peLd~lv---~~a~~~~Ga~GaKl 365 (419) T 1pie_A 296 LIKRARHAVYENNRTKIAQKAFVAGNLTKFGELLN----ASHASLKDDY-EVT--GLELDTLA---ETAQKQAGVLGARM 365 (419) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHH----HHHHHHHHTS-CCC--CHHHHHHH---HHHHHSTTEEEEEE T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH----HHHHHHHHHH-CCC--CHHHHHHH---HHHHHHCCCEEEEE T ss_conf 99999865068899999998753277888999999----9999999975-799--79999999---99998489579897 Q ss_pred ECCCC--EEEEEECHHHHHHHHHHHHHC Q ss_conf 77798--179995589899999997632 Q gi|254781016|r 300 LDAGP--NLKLLFTHKIEETIKQFFPEI 325 (355) Q Consensus 300 ~DAGP--Nv~il~~~~~~~~i~~~l~~i 325 (355) ..||= -+..|++++.++.+.+.+.+. T Consensus 366 tGAG~GGc~iaLv~~~~~~~~~~~l~~~ 393 (419) T 1pie_A 366 TGAGFGGCAIALVAHDNVSAFRKAVGQV 393 (419) T ss_dssp CSSCSSSEEEEEEEGGGHHHHHHHHHHH T ss_pred CCCCCCEEEEEEECCHHHHHHHHHHHHH T ss_conf 0578772899997605899999999999 No 22 >1wuu_A Galactokinase; galactosemia, GHMP superfamily, transferase; HET: GLA ANP; 2.50A {Homo sapiens} SCOP: d.14.1.5 d.58.26.7 Probab=98.78 E-value=2e-05 Score=56.85 Aligned_cols=288 Identities=13% Similarity=0.047 Sum_probs=143.3 Q ss_pred HHHHHHHCCCCCCCCCEEEECCCCEEEEE----CCCCCCHHHCCCCCCCEEEEECCCCEEEEEEECCCCCCEEEE----- Q ss_conf 88887403467877637897488424881----167767011757898434681278107999971788857998----- Q gi|254781016|r 8 ILHRYIGECNPKINEKSSAFLPSNIALCK----YWGKRDSKLNLPLNNSLSLSLGHLGTITHITVIDSDADCIIL----- 78 (355) Q Consensus 8 ~~~~~~~~~~~~~~~~~ta~ap~NIALIK----YWGK~d~~l~lP~n~SiS~TL~~~~T~T~v~~~~~~~d~~~l----- 78 (355) ....|...-+..+ ...+.||--|=|+= |-|+. -|++.++ .+|..+++..++..-+++. T Consensus 23 ~~~~f~~~~g~~p--~~~~sAPGkviL~GEHavv~G~~----------ala~AI~-l~t~v~~~~~~d~~i~v~s~~~~~ 89 (399) T 1wuu_A 23 ARRAFREEFGAEP--ELAVSAPGRVNLIGEHTDYNQGL----------VLPMALE-LMTVLVGSPRKDGLVSLLTTSEGA 89 (399) T ss_dssp HHHHHHHHHSSCC--SEEEEEEEEEEEECTTCGGGTCE----------EEEEEEE-EEEEEEEEEETTCEEEEEECCSSS T ss_pred HHHHHHHHHCCCC--CEEEEECEEEEEECCCHHCCCCE----------EEEEEHH-HCEEEEEEECCCCEEEEEECCCCC T ss_conf 9999999878999--89999134999971862158977----------6826850-068999999899979999877888 Q ss_pred ----------CCEECC---CCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC Q ss_conf ----------787256---6520689999997421676194399998502332110123224799999999998188999 Q gi|254781016|r 79 ----------NGQKIS---SQSSFFKKTTQFCDLFRQFSKVYFLIETSNNIPTKAGLASSASGFAALTLALFRIYSIPEK 145 (355) Q Consensus 79 ----------nG~~~~---~~~~~~~ri~~~l~~~r~~~~~~~~I~S~N~fPtaaGLASSASgfAALa~Al~~~~~~~~~ 145 (355) +..... ........+..++..++......+.|....++|.++||+||||-..|++.|+..+++.+++ T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~i~S~iP~gaGLgSSAA~~Va~~~al~~~~~~~~~ 169 (399) T 1wuu_A 90 DEPQRLQFPLPTAQRSLEPGTPRWANYVKGVIQYYPAAPLPGFSAVVVSSVPLGGGLSSSASLEVATYTFLQQLCPDSGT 169 (399) T ss_dssp CSCSEEEEECCCSSCCCCCCSSGGGHHHHHHHHHCSSSCCCEEEEEEEECSCTTSSSCHHHHHHHHHHHHHHHHSCCCSC T ss_pred CCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCC T ss_conf 76407874144100224656521567778999986404678659999777786567451168999999999986225886 Q ss_pred HHHHHHHHHHCC------CCC----HHHHCCC--CHHCCCCCCCCCCCEEEEECCCCCCCCEEEEEEECCCCCCCCCCHH Q ss_conf 889998865213------530----3431056--2002578987654413101566686421589997287667521056 Q gi|254781016|r 146 SESLSRVARLGS------GSA----CRSFYRG--FCEWICGTDQNGMDSFAVPFNNQWPDLRIGLLKIIDREKKIGSREA 213 (355) Q Consensus 146 ~~~lS~lARlGS------GSA----~RSi~GG--~v~W~~g~~~~~sds~a~~~~~~~~dl~~~i~iv~~~~K~vsSt~g 213 (355) ..++..+|.... .++ .-+.+|+ ...+..... .....++....+. .+++++...+....+.. T Consensus 170 ~~~~~~~a~~~e~~~~G~~~g~~dq~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~----~~~~~~s~~~~~~~~~~ 242 (399) T 1wuu_A 170 IAARAQVCQQAEHSFAGMPCGIMDQFISLMGQKGHALLIDCRS---LETSLVPLSDPKL----AVLITNSNVRHSLASSE 242 (399) T ss_dssp HHHHHHHHHHHHHHHTCCCCCSHHHHHHHHCCTTEEEEEETTT---CCEEEEECCCSSE----EEEEEEEEEEC--CTTT T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCEEEEECCCC---CCEEEECCCCCCE----EEEEEECCCCCCCCHHH T ss_conf 8888899999999760877665316677533676588731687---6334301466634----89997278520243025 Q ss_pred HHHHHH------------------------HCHH----HHHHH---HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH Q ss_conf 798876------------------------1856----89999---7305509999999980999999999999999899 Q gi|254781016|r 214 MEITRH------------------------HSPF----FTQWT---QQISTDLAHIKQAIIDQDFIKLGEVAEKNALKMH 262 (355) Q Consensus 214 m~~~v~------------------------tSp~----y~~r~---~~~~~~~~~~~~ai~~~Df~~l~~i~e~dal~mH 262 (355) ...... .... -..|+ .....+..+..++++++|++.||++.-. .| T Consensus 243 ~~~R~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ra~~~~~e~~~~~~~~~al~~~d~~~lG~Lm~~----~h 318 (399) T 1wuu_A 243 YPVRRRQCEEVARALGKESLREVQLEELEAARDLVSKEGFRRARHVVGEIRRTAQAAAALRRGDYRAFGRLMVE----SH 318 (399) T ss_dssp HHHHHHHHHHHHHHTTCSSTTSCCHHHHTTGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH----HH T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH----HH T ss_conf 78889999999998371001224499999987520447899998887788888889987753899999999999----99 Q ss_pred HHHHCCCCCEEEECHHHHHHHHHHHHHHHC-CCEEEEEECCCCE--EEEEECHHHHHHHHHHHHHC Q ss_conf 987038995686578899999999997428-9619999777981--79995589899999997632 Q gi|254781016|r 263 ATMIAASPPLLYWQKETIQGMERVWDARQQ-SIPIYFTLDAGPN--LKLLFTHKIEETIKQFFPEI 325 (355) Q Consensus 263 a~~~~s~P~~~Y~~~~t~~ii~~v~~~R~~-g~~v~fT~DAGPN--v~il~~~~~~~~i~~~l~~i 325 (355) ..++... .+. +|..-+++ +..++. |.-.+=-..||=- +..|++++..+.+.+.+.+. T Consensus 319 ~~L~~~l-gVS--~p~Ld~lv---~~a~~~~Ga~gaKltGAGgGGc~iaL~~~~~~~~~~~~~~~~ 378 (399) T 1wuu_A 319 RSLRDDY-EVS--CPELDQLV---EAALAVPGVYGSRMTGGGFGGCTVTLLEASAAPHAMRHIQEH 378 (399) T ss_dssp HHHHHTS-CCC--CHHHHHHH---HHHHTSTTEEEEEECSSCSEEEEEEEEEGGGHHHHHHHHHHH T ss_pred HHHHHHH-CCC--CHHHHHHH---HHHHHCCCCEEEEECCCCCCEEEEEEECHHHHHHHHHHHHHH T ss_conf 9999864-799--79999999---999874997398973577763999997667899999999998 No 23 >2a2c_A N-acetylgalactosamine kinase; galactokinase, , transferase; HET: NG1 ADP; 1.65A {Homo sapiens} PDB: 2a2d_A* Probab=98.26 E-value=0.00042 Score=47.52 Aligned_cols=136 Identities=13% Similarity=0.153 Sum_probs=80.3 Q ss_pred HHHHHHHHCCCCCCCCCEEEECCCCEEEEE----CCCCCCHHHCCCCCCCEEEEECCCCEEEEEEECCCCCC-------- Q ss_conf 988887403467877637897488424881----16776701175789843468127810799997178885-------- Q gi|254781016|r 7 HILHRYIGECNPKINEKSSAFLPSNIALCK----YWGKRDSKLNLPLNNSLSLSLGHLGTITHITVIDSDAD-------- 74 (355) Q Consensus 7 ~~~~~~~~~~~~~~~~~~ta~ap~NIALIK----YWGK~d~~l~lP~n~SiS~TL~~~~T~T~v~~~~~~~d-------- 74 (355) .+...|...-+.++. ..++||=-|=|+= |-|+. -|.+.++ .+|...++..++..- T Consensus 41 ~~~~~F~~~fg~~P~--~~~~APGRV~L~GEH~DY~gg~----------Vl~~AI~-~~~~v~v~~~~d~~v~l~s~~~~ 107 (478) T 2a2c_A 41 KLKEMFNSKFGSIPK--FYVRAPGRVNIIGEHIDYCGYS----------VLPMAVE-QDVLIAVEPVKTYALQLANTNPL 107 (478) T ss_dssp HHHHHHHHHHSSCCS--EEEEEEEEEEEECTTCGGGTCC----------BEEEEEE-EEEEEEEEECSSSCEEEEESSTT T ss_pred HHHHHHHHHHCCCCC--EEEECCCCEEEECCCCEECCCE----------EEEEEHH-HCEEEEEEECCCCEEEEEECCCC T ss_conf 999999998789986--9998881278505871039987----------8904861-37899999878987999988988 Q ss_pred --EEEECCE--ECCCCC----HHHHHHHH-HHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC Q ss_conf --7998787--256652----06899999-97421676194399998502332110123224799999999998188999 Q gi|254781016|r 75 --CIILNGQ--KISSQS----SFFKKTTQ-FCDLFRQFSKVYFLIETSNNIPTKAGLASSASGFAALTLALFRIYSIPEK 145 (355) Q Consensus 75 --~~~lnG~--~~~~~~----~~~~ri~~-~l~~~r~~~~~~~~I~S~N~fPtaaGLASSASgfAALa~Al~~~~~~~~~ 145 (355) .+.++.. ..+..+ .++..+.. +++.+....-..+.|....++|.++||.||||--.|++.|+..+++..++ T Consensus 108 ~~~~~~~~~~~~~~~~~~~w~~y~~~~~~~~~~~~~~~~~~G~~i~i~S~iP~gaGLsSSAAl~vA~~~al~~~~~~~~~ 187 (478) T 2a2c_A 108 YPDFSTSANNIQIDKTKPLWHNYFLCGLKGIQEHFGLSNLTGMNCLVDGNIPPSSGLSSSSALVCCAGLVTLTVLGRNLS 187 (478) T ss_dssp SCCEEECCCCC--CCSSCCHHHHHHHHHHHHHHHTTCCSCCCEEEEEEECSCTTSSSCHHHHHHHHHHHHHHHHHTCCCC T ss_pred CCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCC T ss_conf 77422114334556566537889999999999970888888769999467788777676689999999999986256877 Q ss_pred HHHHHHHHHH Q ss_conf 8899988652 Q gi|254781016|r 146 SESLSRVARL 155 (355) Q Consensus 146 ~~~lS~lARl 155 (355) .+++..+++. T Consensus 188 ~~~~~~~~~~ 197 (478) T 2a2c_A 188 KVELAEICAK 197 (478) T ss_dssp HHHHHHHHHH T ss_pred HHHHHHHHHH T ss_conf 8999998789 No 24 >2aj4_A Galactokinase; galactosemia, transcription, transferase; HET: GLA ANP; 2.40A {Saccharomyces cerevisiae} Probab=97.06 E-value=0.022 Score=35.51 Aligned_cols=140 Identities=21% Similarity=0.363 Sum_probs=77.8 Q ss_pred HHHHHHHHHCCCCCCCCCEEEECCCCEEEEECCCCCCHHHCCCCCCCEEEEECCCCEEEEEEECCCCCCEEEE------- Q ss_conf 8988887403467877637897488424881167767011757898434681278107999971788857998------- Q gi|254781016|r 6 RHILHRYIGECNPKINEKSSAFLPSNIALCKYWGKRDSKLNLPLNNSLSLSLGHLGTITHITVIDSDADCIIL------- 78 (355) Q Consensus 6 ~~~~~~~~~~~~~~~~~~~ta~ap~NIALIKYWGK~d~~l~lP~n~SiS~TL~~~~T~T~v~~~~~~~d~~~l------- 78 (355) ..+...|...-+.++. ..++||=-|=|| |.. ...+- -+.|.+.++ .+|...+...++...++.+ T Consensus 50 ~~~~~~F~~~fg~~P~--~v~~APGRVnLi---GEH-tDY~g--G~VLp~AI~-~~~~v~v~~~~d~~~~i~s~~~~~~~ 120 (548) T 2aj4_A 50 PSIIKKFISAYDAKPD--FVARSPGRVNLI---GEH-IDYCD--FSVLPLAID-FDMLCAVKVLNEKNPSITLINADPKF 120 (548) T ss_dssp HHHHHHHHHHHSSCCS--EEEEEEEEEEEE---CCS-CGGGT--CCBEEEEEE-EEEEEEEEEECCSSCEEEEEESSTTS T ss_pred HHHHHHHHHHHCCCCC--EEEECCCCEEEC---CCC-CCCCC--CEEEEEEHC-CCEEEEEEECCCCCEEEEEEECCCCC T ss_conf 9999999998689988--899878417851---275-40489--835806850-06899999967995599997348765 Q ss_pred ---------CCEECCCC---C---HHHHHHHH----HHHHHH--HHCC---CEEEEEEECCCCCCCHHHHHHHHHHHHHH Q ss_conf ---------78725665---2---06899999----974216--7619---43999985023321101232247999999 Q gi|254781016|r 79 ---------NGQKISSQ---S---SFFKKTTQ----FCDLFR--QFSK---VYFLIETSNNIPTKAGLASSASGFAALTL 134 (355) Q Consensus 79 ---------nG~~~~~~---~---~~~~ri~~----~l~~~r--~~~~---~~~~I~S~N~fPtaaGLASSASgfAALa~ 134 (355) ++...... . .+++-+.. ++..+. ...+ ..+.|....++|.++||.||||--.|++. T Consensus 121 ~~~~~dl~~~~~~~~~~~~~~~W~~Yv~g~~~~~~~~~~~~~~~~~~~~~~~G~~i~I~s~IP~gaGLSSSAAl~va~~~ 200 (548) T 2aj4_A 121 AQRKFDLPLDGSYVTIDPSVSDWSNYFKCGLHVAHSFLKKLAPERFASAPLAGLQVFCEGDVPTGSGLSSSAAFICAVAL 200 (548) T ss_dssp CCEEEECCTTSCCCCCCTTSCCHHHHHHHHHHHHHHHHHHHCHHHHSSSCCCEEEEEEEECSCTTSSSCHHHHHHHHHHH T ss_pred CEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHH T ss_conf 42688426764323247665426779999999999999875566415788876699997787778885548899999999 Q ss_pred HHHHHH---CCCCCHHHHHHHHH Q ss_conf 999981---88999889998865 Q gi|254781016|r 135 ALFRIY---SIPEKSESLSRVAR 154 (355) Q Consensus 135 Al~~~~---~~~~~~~~lS~lAR 154 (355) |+..+. +..++..++..+++ T Consensus 201 al~~~~~~~~~~~~~~~~a~~~~ 223 (548) T 2aj4_A 201 AVVKANMGPGYHMSKQNLMRITV 223 (548) T ss_dssp HHHHHHHCTTCCCBHHHHHHHHT T ss_pred HHHHHCCCCCCCCCHHHHHHHHH T ss_conf 99973116777645888878778 No 25 >1z8o_A 6-deoxyerythronolide B hydroxylase; heme, CYP, erythromycin, oxidoreductase; HET: HEM DEB; 1.70A {Saccharopolyspora erythraea} SCOP: a.104.1.1 PDB: 1z8p_A* 1z8q_A* 1jio_A* 1jip_A* 1eup_A* 1egy_A* 1jin_A* 1oxa_A* Probab=44.63 E-value=13 Score=16.05 Aligned_cols=18 Identities=6% Similarity=0.010 Sum_probs=10.8 Q ss_pred EEEEECCCCEEEEEECHHHHH Q ss_conf 999977798179995589899 Q gi|254781016|r 296 IYFTLDAGPNLKLLFTHKIEE 316 (355) Q Consensus 296 v~fT~DAGPNv~il~~~~~~~ 316 (355) -|++|.+||. .|.-.+.. T Consensus 340 ~~l~FG~G~r---~C~G~~lA 357 (404) T 1z8o_A 340 GHLSFGQGIH---FCMGRPLA 357 (404) T ss_dssp TCCTTCSSTT---CCTTHHHH T ss_pred CCCCCCCCCC---CCHHHHHH T ss_conf 9899999977---88039999 No 26 >2w3z_A Putative deacetylase; PGDA, glcnac DE-N-acetylase, hydrolase, divale metal cation dependent, carbohydrate esterase family 4; 1.45A {Streptococcus mutans UA159} Probab=43.51 E-value=15 Score=15.78 Aligned_cols=19 Identities=5% Similarity=0.076 Sum_probs=10.0 Q ss_pred HHHHHHHH-HHHHHHHCCCE Q ss_conf 88999999-99997428961 Q gi|254781016|r 277 KETIQGME-RVWDARQQSIP 295 (355) Q Consensus 277 ~~t~~ii~-~v~~~R~~g~~ 295 (355) +.|.+++. .|..++++|.. T Consensus 287 ~~t~~aL~~lI~~lk~~GY~ 306 (311) T 2w3z_A 287 TITLASLPQIIRYYKDRGYT 306 (311) T ss_dssp HHHHHHHHHHHHHHHHTTCE T ss_pred HHHHHHHHHHHHHHHHCCCE T ss_conf 31899999999999978998 No 27 >2vyo_A ECU11_0510, chitooligosaccharide deacetylase; CE4 esterase, native protein, microsporidian, chitin deacetylase, hydrolase, inactive; 1.50A {Encephalitozoon cuniculi} Probab=41.56 E-value=14 Score=15.97 Aligned_cols=10 Identities=0% Similarity=0.046 Sum_probs=6.0 Q ss_pred CCEEEEECCC Q ss_conf 8434681278 Q gi|254781016|r 51 NSLSLSLGHL 60 (355) Q Consensus 51 ~SiS~TL~~~ 60 (355) .-|.+|.|+- T Consensus 26 ~~VaLTFDDG 35 (254) T 2vyo_A 26 GMIAINFVDG 35 (254) T ss_dssp SEEEEEEESC T ss_pred CEEEEEEECC T ss_conf 9899986079 No 28 >2c71_A Glycoside hydrolase, family 11\:clostridium cellulosome enzyme, dockerin type I\:polysaccharide...; acetyl-xylan, esterases, metal-ION; 1.05A {Clostridium thermocellum} SCOP: c.6.2.3 PDB: 2c79_A Probab=41.38 E-value=16 Score=15.56 Aligned_cols=37 Identities=16% Similarity=0.334 Sum_probs=21.0 Q ss_pred CCCCCCEEEEECCCCEEE--E-E-EECC--CCCCEEEECCEEC Q ss_conf 578984346812781079--9-9-9717--8885799878725 Q gi|254781016|r 47 LPLNNSLSLSLGHLGTIT--H-I-TVID--SDADCIILNGQKI 83 (355) Q Consensus 47 lP~n~SiS~TL~~~~T~T--~-v-~~~~--~~~d~~~lnG~~~ 83 (355) ||....|.+|.|+..... . + ...+ .-.-+|+++|... T Consensus 1 lP~~K~VaLTfDDgp~~~~t~~il~~L~~~~v~aTFFv~G~~~ 43 (216) T 2c71_A 1 MPANKLVALTFDDGPDNVLTARVLDKLDKYNVKATFMVVGQRV 43 (216) T ss_dssp ----CEEEEEEESCCCHHHHHHHHHHHHHHTCCCEEEECGGGC T ss_pred CCCCCEEEEEEECCCCCCCHHHHHHHHHHCCCCEEEEEECCCC T ss_conf 9799999998857998040999999999869819999816230 No 29 >1jsu_C P27, KIP1, CIP2; complex (transferase/cyclin/inhibitor), kinase, cell cycle, cell division, CDK, cyclin, inhibitor; HET: TPO; 2.30A {Homo sapiens} SCOP: j.55.1.1 Probab=39.38 E-value=5 Score=19.07 Aligned_cols=14 Identities=29% Similarity=0.477 Sum_probs=10.6 Q ss_pred CCCCCHHHHCCCCH Q ss_conf 13530343105620 Q gi|254781016|r 156 GSGSACRSFYRGFC 169 (355) Q Consensus 156 GSGSA~RSi~GG~v 169 (355) +.-||||++||+-- T Consensus 2 ~k~sacR~LFGpvd 15 (84) T 1jsu_C 2 PKPSACRNLFGPVD 15 (84) T ss_dssp -CCTTCCCSSCCCC T ss_pred CCCCHHHHCCCCCC T ss_conf 98654554569999 No 30 >1sr2_A Putative sensor-like histidine kinase YOJN; four-helical bundle, transferase; NMR {Escherichia coli} SCOP: a.24.10.4 Probab=39.00 E-value=17 Score=15.31 Aligned_cols=45 Identities=18% Similarity=0.435 Sum_probs=34.5 Q ss_pred CCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH Q ss_conf 52105679887618568999973055099999999809999999999 Q gi|254781016|r 208 IGSREAMEITRHHSPFFTQWTQQISTDLAHIKQAIIDQDFIKLGEVA 254 (355) Q Consensus 208 vsSt~gm~~~v~tSp~y~~r~~~~~~~~~~~~~ai~~~Df~~l~~i~ 254 (355) ....++.+..+ +-++.--++..+.++.++..|+.++||..+..++ T Consensus 23 ~~~~~~~~~~~--~~~~~lF~~~~~~~l~~L~~a~~~~D~~~l~~~a 67 (116) T 1sr2_A 23 LGGDENAQLHA--SGYYALFVDTVPDDVKRLYTEAATSDFAALAQTA 67 (116) T ss_dssp SCSSHHHHHHH--HTTHHHHTTTHHHHHHHHHHHHHHTCHHHHHHHH T ss_pred HHCCCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH T ss_conf 73047742789--9999999985299999999999877999999999 No 31 >1odo_A Putative cytochrome P450 154A1; P450 monooxygenase, oxidoreductase; HET: HEM PIM; 1.85A {Streptomyces coelicolor} SCOP: a.104.1.1 Probab=34.66 E-value=20 Score=14.86 Aligned_cols=18 Identities=6% Similarity=-0.040 Sum_probs=10.2 Q ss_pred EEEEECCCCEEEEEECHHHHH Q ss_conf 999977798179995589899 Q gi|254781016|r 296 IYFTLDAGPNLKLLFTHKIEE 316 (355) Q Consensus 296 v~fT~DAGPNv~il~~~~~~~ 316 (355) -|+.|.+||. .|.-.+.. T Consensus 343 ~~lpFG~G~r---~CiG~~lA 360 (408) T 1odo_A 343 EHLAFGHGVH---FCLGAPLA 360 (408) T ss_dssp CCCTTCSSTT---SCTTHHHH T ss_pred CCCCCCCCCC---CCCCHHHH T ss_conf 9987789883---78109999 No 32 >1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYB; 2.0A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A* Probab=33.99 E-value=20 Score=14.78 Aligned_cols=55 Identities=13% Similarity=0.134 Sum_probs=44.3 Q ss_pred CCCCCCCCCHHHHHHHHHCH--HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH Q ss_conf 87667521056798876185--68999973055099999999809999999999999 Q gi|254781016|r 203 DREKKIGSREAMEITRHHSP--FFTQWTQQISTDLAHIKQAIIDQDFIKLGEVAEKN 257 (355) Q Consensus 203 ~~~K~vsSt~gm~~~v~tSp--~y~~r~~~~~~~~~~~~~ai~~~Df~~l~~i~e~d 257 (355) ++.+|.|+++|-..-..+|| +|+.|.....+++.+....+..-+.+.+-++.+.. T Consensus 228 ~g~~KmskS~~~~i~l~~~p~~~~~~~~~~~D~dv~kyLklfT~l~~eEIe~l~~~~ 284 (432) T 1h3f_A 228 DGREKMSKSLDNYIGLTEPPEAMFKKLMRVPDPLLPSYFRLLTDLEEEEIEALLKAG 284 (432) T ss_dssp TSSSBCCGGGTCCCBTTSCHHHHHHHHHTSCGGGHHHHHHHHCCCCHHHHHHHHHHC T ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHC T ss_conf 876766689999713267838899999818858899999860225699999998637 No 33 >2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99.5) (CM) and prephenate dehydrogenase...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6 Probab=33.83 E-value=21 Score=14.77 Aligned_cols=24 Identities=4% Similarity=-0.093 Sum_probs=10.1 Q ss_pred HHHHHHHHHHHHHCCHHHHHHHHH Q ss_conf 550999999998099999999999 Q gi|254781016|r 232 STDLAHIKQAIIDQDFIKLGEVAE 255 (355) Q Consensus 232 ~~~~~~~~~ai~~~Df~~l~~i~e 255 (355) ...+.++.++|.++|.++|.++.+ T Consensus 245 ~~~L~~l~~~i~~~D~~~l~~~l~ 268 (298) T 2pv7_A 245 KQTYDEALTFFENNDRQGFIDAFH 268 (298) T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHH T ss_pred HHHHHHHHHHHHCCCHHHHHHHHH T ss_conf 999999999998679999999999 No 34 >1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A Probab=33.42 E-value=21 Score=14.72 Aligned_cols=56 Identities=11% Similarity=0.160 Sum_probs=43.0 Q ss_pred ECCCCCCCCCCHHHHHH---HHHCH--HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH Q ss_conf 72876675210567988---76185--68999973055099999999809999999999999 Q gi|254781016|r 201 IIDREKKIGSREAMEIT---RHHSP--FFTQWTQQISTDLAHIKQAIIDQDFIKLGEVAEKN 257 (355) Q Consensus 201 v~~~~K~vsSt~gm~~~---v~tSp--~y~~r~~~~~~~~~~~~~ai~~~Df~~l~~i~e~d 257 (355) -.++ +|.+.|.|...- -.||| ||+-|.....+++......+..-+.+++.++.+.. T Consensus 288 ~~dG-~KmgKS~gnaIwLd~~~tSpye~yq~~~n~~D~~v~~yLklfT~l~~eeI~~l~~~~ 348 (392) T 1y42_X 288 DSSG-AKFGKSAGNAIWLDPYQTSVFDFYGYFVRRSDQEVENLLKLFTFMPISEITKTMEEH 348 (392) T ss_dssp CTTC-CBTTBCSSSBCBSSTTTSCHHHHHHHHHTCCTTTHHHHHHHHCCCCHHHHHHHHHHH T ss_pred CCCC-CHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHH T ss_conf 7983-046650589750467766778999998348898999999997459999999999997 No 35 >2iw0_A Chitin deacetylase; hydrolase, chitin DE-N-acetylase, family 4 carbohydrate esterase; 1.81A {Colletotrichum lindemuthianum} SCOP: c.6.2.3 Probab=32.77 E-value=18 Score=15.11 Aligned_cols=33 Identities=9% Similarity=0.043 Sum_probs=16.9 Q ss_pred CCEEEEECCCCEEEEEEE----CC-CCCCEEEECCEEC Q ss_conf 843468127810799997----17-8885799878725 Q gi|254781016|r 51 NSLSLSLGHLGTITHITV----ID-SDADCIILNGQKI 83 (355) Q Consensus 51 ~SiS~TL~~~~T~T~v~~----~~-~~~d~~~lnG~~~ 83 (355) ..|.+|-|+.....+-.. .. .-+-+|++.|+.. T Consensus 42 ~~VaLTFDDGp~~~t~~il~~L~~~~ikATFFv~G~~~ 79 (254) T 2iw0_A 42 GLVALTYDDGPFTFTPQLLDILKQNDVRATFFVNGNNW 79 (254) T ss_dssp SEEEEEEESCSCTTHHHHHHHHHHHTCCCEEEECSBSS T ss_pred CEEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCCC T ss_conf 98999883796371999999999779938999968765 No 36 >2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis} Probab=25.92 E-value=28 Score=13.87 Aligned_cols=59 Identities=15% Similarity=0.156 Sum_probs=40.2 Q ss_pred EEEECCCCCCCCCCHHHHH---HHHHCH--HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH Q ss_conf 9997287667521056798---876185--6899997305509999999980999999999999 Q gi|254781016|r 198 LLKIIDREKKIGSREAMEI---TRHHSP--FFTQWTQQISTDLAHIKQAIIDQDFIKLGEVAEK 256 (355) Q Consensus 198 i~iv~~~~K~vsSt~gm~~---~v~tSp--~y~~r~~~~~~~~~~~~~ai~~~Df~~l~~i~e~ 256 (355) ++.=.++.|.-+|+.+.-. ...||| ||+-|.....+++......+..-..+.+.++.+. T Consensus 223 LL~~~dG~K~gks~~~~~iwld~~~tsP~~~yq~~~n~~D~~v~kyl~l~T~l~~~eI~~l~~~ 286 (432) T 2jan_A 223 LVTAADGTKFGKSTGGGSLWLDPQMTSPYAWYQYFVNTADADVIRYLRWFTFLSADELAELEQA 286 (432) T ss_dssp CCBCTTSCBTTBCSSSCBCBSSTTTSCHHHHHHHHHTCCHHHHHHHHHHHSCCCHHHHHHHHHH T ss_pred CCCCCCCCCCCCCCCCCCEEECCCCCCHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHH T ss_conf 5227987832341368742423688886999977402788999999998457887789999997 No 37 >1rdt_E LXXLL motif coactivator, peroxisome proliferator activated receptor gamma; hormone, polymorphism, hormone/growth factor complex; HET: L79 570; 2.40A {Homo sapiens} Probab=23.38 E-value=25 Score=14.23 Aligned_cols=14 Identities=50% Similarity=0.627 Sum_probs=11.4 Q ss_pred HHHHHHHHHHCCCC Q ss_conf 88999886521353 Q gi|254781016|r 146 SESLSRVARLGSGS 159 (355) Q Consensus 146 ~~~lS~lARlGSGS 159 (355) -+.+|.+-|-|||| T Consensus 10 hkqlsellrggsgs 23 (26) T 1rdt_E 10 HKQLSELLRGGSGS 23 (26) T ss_pred HHHHHHHHCCCCCC T ss_conf 89999997077887 No 38 >1rpx_A Protein (ribulose-phosphate 3-epimerase); chloroplast, calvin cycle, oxidative pentose phosphate pathway; 2.30A {Solanum tuberosum} SCOP: c.1.2.2 Probab=21.27 E-value=18 Score=15.20 Aligned_cols=44 Identities=7% Similarity=0.216 Sum_probs=28.5 Q ss_pred HHHHCCCCCEEE--ECHHHHHHHHHHHHHHHC-CCEEEEEECCCCEE Q ss_conf 987038995686--578899999999997428-96199997779817 Q gi|254781016|r 263 ATMIAASPPLLY--WQKETIQGMERVWDARQQ-SIPIYFTLDAGPNL 306 (355) Q Consensus 263 a~~~~s~P~~~Y--~~~~t~~ii~~v~~~R~~-g~~v~fT~DAGPNv 306 (355) -++|+..|++.- +.+.+++-|+.+++++.+ +..+..-.|.|=|- T Consensus 144 VlvMtV~PGf~GQ~f~~~~l~kI~~~~~~~~~~~~~~~I~VDGGIn~ 190 (230) T 1rpx_A 144 VLIMSVNPGFGGQSFIESQVKKISDLRKICAERGLNPWIEVDGGVGP 190 (230) T ss_dssp EEEESSCTTCSSCCCCTTHHHHHHHHHHHHHHHTCCCEEEEESSCCT T ss_pred EEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCH T ss_conf 99988768987544468899999999999986599358999888788 No 39 >3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: MSE; 1.80A {Campylobacter jejuni} PDB: 3ler_A* Probab=20.42 E-value=35 Score=13.14 Aligned_cols=79 Identities=5% Similarity=0.129 Sum_probs=44.4 Q ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-HHHHHCCCCCEEEECHHHHHHHHHHHHHHHCCCEEEEEECCCCE--EE Q ss_conf 0550999999998099999999999999989-99870389956865788999999999974289619999777981--79 Q gi|254781016|r 231 ISTDLAHIKQAIIDQDFIKLGEVAEKNALKM-HATMIAASPPLLYWQKETIQGMERVWDARQQSIPIYFTLDAGPN--LK 307 (355) Q Consensus 231 ~~~~~~~~~~ai~~~Df~~l~~i~e~dal~m-Ha~~~~s~P~~~Y~~~~t~~ii~~v~~~R~~g~~v~fT~DAGPN--v~ 307 (355) .++.+.++.++++++|+++.-++-+. -+.+ .++...+.| ..++..-++| |+ +++||- .. T Consensus 217 ~p~~~~~l~~~~~~gd~~~a~~l~~~-l~~~~~~~~~~~~~----------~~~K~~l~~~--G~-----~~~g~~R~P~ 278 (301) T 3m5v_A 217 LPDMISALTHFALDENYKEAKKINDE-LYNINKILFCESNP----------IPIKTAMYLA--GL-----IESLEFRLPL 278 (301) T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHH-THHHHHHTTSSSTT----------HHHHHHHHHT--TS-----SSCCCCCTTC T ss_pred CCHHHHHHHHHHHCCCHHHHHHHHHH-HHHHHHHHHCCCCH----------HHHHHHHHHC--CC-----CCCCCCCCCC T ss_conf 61789999999861679999999999-99999999546778----------9999999987--99-----9999839899 Q ss_pred EEECHHHHHHHHHHHHHCCC Q ss_conf 99558989999999763210 Q gi|254781016|r 308 LLFTHKIEETIKQFFPEITI 327 (355) Q Consensus 308 il~~~~~~~~i~~~l~~i~~ 327 (355) .=...++.++|++.++++++ T Consensus 279 ~~l~~e~~~~i~~~l~~~~~ 298 (301) T 3m5v_A 279 CSPSKENFAKIEEVMKKYKI 298 (301) T ss_dssp CCCCHHHHHHHHHHHTTSCC T ss_pred CCCCHHHHHHHHHHHHHCCC T ss_conf 99999999999999997179 Done!