HHSEARCH alignment of GI: 254781016 and SCOP domain: d1oj4a1

Alignment

Probab=97.74  E-value=0.00028  Score=47.06  Aligned_cols=71  Identities=14%  Similarity=0.132  Sum_probs=57.0

Q ss_pred             CEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHCCCCHHCCCCCCC
Q ss_conf             439999850233211012322479999999999818899988999886521353034310562002578987
Q gi|254781016|r  106 VYFLIETSNNIPTKAGLASSASGFAALTLALFRIYSIPEKSESLSRVARLGSGSACRSFYRGFCEWICGTDQ  177 (355)
Q Consensus       106 ~~~~I~S~N~fPtaaGLASSASgfAALa~Al~~~~~~~~~~~~lS~lARlGSGSA~RSi~GG~v~W~~g~~~  177 (355)
                      ..++|.-+-|+|.+|||+..+|-.||+.+++.+.++++++.+++..+|...-.--.-.++|+ ..|..|.++
T Consensus        88 ~~~~I~i~KnIP~gaGLGGGSsnAAa~L~~l~~~~~~~l~~~~l~~ia~~iGsDvpffl~~~-~a~~~G~Ge  158 (163)
T d1oj4a1          88 SGANISIDKRLPMGGGLGGGSSNAATVLVALNHLWQCGLSMDELAEMGLTLGADVPVFVRGH-AAFAEGVGE  158 (163)
T ss_dssp             CEEEEEEECCSCSSTTSCHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHGGGCTTHHHHHHCB-CEEEETTTT
T ss_pred             CCEEEEEEEEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCCCC-CEEEEECCC
T ss_conf             76499998525651035689715999999864222237999999999988099414320598-789997697

SCOP domain information

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S5 domain 2-like
superfamily: Ribosomal protein S5 domain 2-like
family: GHMP Kinase, N-terminal domain
domain: 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase IspE
species: Escherichia coli [TaxId: 562]