Query         gi|254781016|ref|YP_003065429.1| diphosphomevalonate decarboxylase/isopentenyl-diphosphate delta-isomerase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 355
No_of_seqs    128 out of 512
Neff          5.8 
Searched_HMMs 13730
Date          Wed Jun  1 11:10:06 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254781016.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d1fi4a1 d.14.1.5 (A:3-190) Mev 100.0       0       0  429.4  14.1  171   22-192     2-188 (188)
  2 d1fi4a2 d.58.26.2 (A:191-393)  100.0 4.7E-41 2.8E-45  304.2  16.5  134  193-326     1-137 (203)
  3 d1h72c1 d.14.1.5 (C:5-167) Hom  99.3 3.9E-12 2.8E-16  102.1  10.4  137   23-171     2-149 (163)
  4 d1kkha1 d.14.1.5 (A:1-180) Mev  98.8 8.4E-08 6.1E-12   71.7  12.3  145   21-174     3-175 (180)
  5 d1k47a1 d.14.1.5 (A:1-194) Pho  98.4 2.8E-06   2E-10   61.1  11.6  126   45-173    17-164 (194)
  6 d1kvka1 d.14.1.5 (A:1-225) Mev  97.9 6.6E-05 4.8E-09   51.5  10.1   69  107-175   128-220 (225)
  7 d1piea1 d.14.1.5 (A:9-213) Gal  97.9  0.0001 7.4E-09   50.2  10.3  153    9-169     7-185 (205)
  8 d1wuua1 d.14.1.5 (A:2-216) Gal  97.8 0.00019 1.4E-08   48.3  10.9  147    8-167    15-193 (215)
  9 d1oj4a1 d.14.1.5 (A:1-163) 4-(  97.7 0.00028 2.1E-08   47.1  11.2   71  106-177    88-158 (163)
 10 d1s4ea1 d.14.1.5 (A:5-180) Gal  97.6 3.2E-05 2.3E-09   53.7   4.6   63  107-169    85-157 (176)
 11 d1ueka1 d.14.1.5 (A:1-148) 4-(  97.3 0.00059 4.3E-08   44.9   7.7  135   26-177     5-142 (148)
 12 d1h72c2 d.58.26.1 (C:168-300)   96.5  0.0061 4.5E-07   37.7   7.6  115  193-325     2-117 (133)
 13 d1k47a2 d.58.26.4 (A:195-329)   95.3     0.1 7.4E-06   29.2  13.8  123  192-327     2-127 (135)
 14 d1s4ea2 d.58.26.7 (A:181-351)   90.3    0.57 4.1E-05   24.0  11.1   84  232-325    65-150 (171)
 15 d1piea2 d.58.26.7 (A:214-396)   85.8     1.1 7.8E-05   22.1   9.8   83  232-324    74-159 (183)
 16 d1kkha2 d.58.26.3 (A:181-317)   73.5     2.6 0.00019   19.3  12.0  110  200-325    15-126 (137)
 17 d1sr2a_ a.24.10.4 (A:) Sensor-  55.2       5 0.00037   17.4   3.2   59  221-289    34-92  (116)
 18 d1wuua2 d.58.26.7 (A:217-392)   48.3     7.2 0.00053   16.3   9.8   83  232-325    69-155 (176)
 19 d1kvka2 d.58.26.3 (A:226-394)   39.6     9.7 0.00071   15.4  12.5  119  191-325     2-138 (169)
 20 d2iw0a1 c.6.2.3 (A:29-248) Chi  35.9      10 0.00076   15.2   2.4   35   50-84     13-52  (220)
 21 d1ny1a_ c.6.2.3 (A:) Probable   33.2      10 0.00076   15.2   2.0   34   51-84     43-82  (235)
 22 d2a0ba_ a.24.10.1 (A:) Aerobic  24.5      17  0.0012   13.7   4.7   34  222-255    26-59  (118)
 23 d2ts1a_ c.26.1.1 (A:) Tyrosyl-  21.8      19  0.0014   13.3   2.0   57  199-256   223-284 (319)
 24 d1rpxa_ c.1.2.2 (A:) D-ribulos  20.9      11 0.00077   15.1   0.2   42  264-305   145-189 (230)

No 1  
>d1fi4a1 d.14.1.5 (A:3-190) Mevalonate 5-diphosphate decarboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=100.00  E-value=0  Score=429.35  Aligned_cols=171  Identities=43%  Similarity=0.701  Sum_probs=151.4

Q ss_pred             CCEEEECCCCEEEEECCCCCCHHHCCCCCCCEEEEECC--CCEEEEEEECCC-CCCEEEECCEECCCCCHHHHHHHHHHH
Q ss_conf             63789748842488116776701175789843468127--810799997178-885799878725665206899999974
Q gi|254781016|r   22 EKSSAFLPSNIALCKYWGKRDSKLNLPLNNSLSLSLGH--LGTITHITVIDS-DADCIILNGQKISSQSSFFKKTTQFCD   98 (355)
Q Consensus        22 ~~~ta~ap~NIALIKYWGK~d~~l~lP~n~SiS~TL~~--~~T~T~v~~~~~-~~d~~~lnG~~~~~~~~~~~ri~~~l~   98 (355)
                      .++||+||+||||||||||+|+++|||.||||||||+.  ++|+|++++.+. ++|+++|||++.+...++.+++...++
T Consensus         2 ~~~t~~apsNIALiKYWGK~d~~~~lP~n~SiS~TL~~~~~~T~t~v~~~~~~~~d~~~lnG~~~~~~~~~~~~~~~~l~   81 (188)
T d1fi4a1           2 YTASVTAPVNIATLKYWGKRDTKLNLPTNSSISVTLSQDDLRTLTSAATAPEFERDTLWLNGEPHSIDNERTQNCLRDLR   81 (188)
T ss_dssp             EEEEEEECCEEEEECCCCEEETTTTEESSCEEEEEBCTTTSCEEEEEEECTTCCSCBCTTTCCBSSSSSSSHHHHHHHHH
T ss_pred             EEEEEECCCCEEEEEECCCCCCCCCCCCCCEEEEEECCCCCEEEEEEEECCCCCCCCEEECCEECCCCHHHHHHHHHHHH
T ss_conf             57899753748788752645754577899827899358986788999867877654135788203640278899999999


Q ss_pred             HHHHH-----------CCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHCCC
Q ss_conf             21676-----------1943999985023321101232247999999999981889998899988652135303431056
Q gi|254781016|r   99 LFRQF-----------SKVYFLIETSNNIPTKAGLASSASGFAALTLALFRIYSIPEKSESLSRVARLGSGSACRSFYRG  167 (355)
Q Consensus        99 ~~r~~-----------~~~~~~I~S~N~fPtaaGLASSASgfAALa~Al~~~~~~~~~~~~lS~lARlGSGSA~RSi~GG  167 (355)
                      .++..           .+++++|+|+|||||+|||||||||||||+.|+.++++++++.+++|+|||+||||||||+|||
T Consensus        82 ~~~~~~~~~~~~~p~~~~~~~~I~S~N~FP~aaGLASSAsg~aAl~~al~~~~~~~~~~~~~S~lARlGSGSAcRSi~Gg  161 (188)
T d1fi4a1          82 QLRKEMESKDASLPTLSQWKLHIVSENNFPTAAGLASSAAGFAALVSAIAKLYQLPQSTSEISRIARKGSGSACRSLFGG  161 (188)
T ss_dssp             HHHHHHHTTCTTSCCGGGSCEEEEEEECCCTTSCCCHHHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHGGGGGGGSSS
T ss_pred             HHHHHHHCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHCCC
T ss_conf             99988730243576412442899962788221108887988999999999997177888999999876454403232088


Q ss_pred             CHHCCCCCCCCCCCEEEEEC--CCCCC
Q ss_conf             20025789876544131015--66686
Q gi|254781016|r  168 FCEWICGTDQNGMDSFAVPF--NNQWP  192 (355)
Q Consensus       168 ~v~W~~g~~~~~sds~a~~~--~~~~~  192 (355)
                      ||+|+.|..+|++|+||+++  ++|||
T Consensus       162 ~v~W~~g~~~dg~d~~a~~~~~~~hWp  188 (188)
T d1fi4a1         162 YVAWEMGKAEDGHDSMAVQIADSSDWP  188 (188)
T ss_dssp             EEEEECCSCTTCTTCEEEEEECGGGST
T ss_pred             EEEECCCCCCCCCCEEEEECCCCCCCC
T ss_conf             668026899998860378888745798


No 2  
>d1fi4a2 d.58.26.2 (A:191-393) Mevalonate 5-diphosphate decarboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=100.00  E-value=4.7e-41  Score=304.18  Aligned_cols=134  Identities=21%  Similarity=0.406  Sum_probs=128.8

Q ss_pred             CCEEEEEEECCCCCCCCCCHHHHHHHHHCHHHHHHHHH-HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             42158999728766752105679887618568999973-05509999999980999999999999999899987038995
Q gi|254781016|r  193 DLRIGLLKIIDREKKIGSREAMEITRHHSPFFTQWTQQ-ISTDLAHIKQAIIDQDFIKLGEVAEKNALKMHATMIAASPP  271 (355)
Q Consensus       193 dl~~~i~iv~~~~K~vsSt~gm~~~v~tSp~y~~r~~~-~~~~~~~~~~ai~~~Df~~l~~i~e~dal~mHa~~~~s~P~  271 (355)
                      +++++|+||++++|+||||+||+++++|||||+.|+++ ++.|+.+|++||+++||++||+++|+|+|+|||+||+++||
T Consensus         1 elr~~IlVvs~~~K~vsSt~GM~~tv~TSpl~~~r~~~~~p~r~~~m~~AI~~rDF~~f~eite~ds~~mHA~~l~s~Pp   80 (203)
T d1fi4a2           1 QMKACVLVVSDIKKDVSSTQGMQLTVATSELFKERIEHVVPKRFEVMRKAIVEKDFATFAKETMMDSNSFHATCLDSFPP   80 (203)
T ss_dssp             TEEEEEEEECCCSCCCCHHHHHHHHHHHCSHHHHHHHTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSC
T ss_pred             CCEEEEEEECCCCCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf             93699999659987788679998787719558999998758899999999995999999999998499999998547998


Q ss_pred             EEEECHHHHHHHHHHHHHHH--CCCEEEEEECCCCEEEEEECHHHHHHHHHHHHHCC
Q ss_conf             68657889999999999742--89619999777981799955898999999976321
Q gi|254781016|r  272 LLYWQKETIQGMERVWDARQ--QSIPIYFTLDAGPNLKLLFTHKIEETIKQFFPEIT  326 (355)
Q Consensus       272 ~~Y~~~~t~~ii~~v~~~R~--~g~~v~fT~DAGPNv~il~~~~~~~~i~~~l~~i~  326 (355)
                      |+||+|.|+++|++|+++|+  ++++|||||||||||||||++++++.|.++|..+.
T Consensus        81 i~Ylnd~S~~ii~~V~~~r~~~g~~~v~yT~DAGPNv~ll~~~~~~~~v~~~l~~~f  137 (203)
T d1fi4a2          81 IFYMNDTSKRIISWCHTINQFYGETIVAYTFDAGPNAVLYYLAENESKLFAFIYKLF  137 (203)
T ss_dssp             CCCCCHHHHHHHHHHHHHHHHHTSCCEEEEECSSSCEEEEEEGGGHHHHHHHHHHHH
T ss_pred             EEEECCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCEEEEECCCCHHHHHHHHHHHC
T ss_conf             587895189999999999986599658999779997799976503999999999977


No 3  
>d1h72c1 d.14.1.5 (C:5-167) Homoserine kinase {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=99.35  E-value=3.9e-12  Score=102.07  Aligned_cols=137  Identities=16%  Similarity=0.135  Sum_probs=99.2

Q ss_pred             CEEEECCCCEEEEECCCCCCHHHCCCCCCCEEEEECCCCEEEEEEECCCCCCEEEECCEECCCCCHHHHHHHHHHHHHHH
Q ss_conf             37897488424881167767011757898434681278107999971788857998787256652068999999742167
Q gi|254781016|r   23 KSSAFLPSNIALCKYWGKRDSKLNLPLNNSLSLSLGHLGTITHITVIDSDADCIILNGQKISSQSSFFKKTTQFCDLFRQ  102 (355)
Q Consensus        23 ~~ta~ap~NIALIKYWGK~d~~l~lP~n~SiS~TL~~~~T~T~v~~~~~~~d~~~lnG~~~~~~~~~~~ri~~~l~~~r~  102 (355)
                      |.+.++|.-+|=+           =|=-++|.+.|+.++.+.+++..+..+..+..+++..+..+.. .-+.+..+.+.+
T Consensus         2 ~i~v~~Pas~aNl-----------g~GFD~lg~Al~~~~d~v~v~~~~~~~i~i~~~~~~i~~~~~~-n~~~~~~~~~~~   69 (163)
T d1h72c1           2 KVRVKAPCTSANL-----------GVGFDVFGLCLKEPYDVIEVEAIDDKEIIIEVDDKNIPTDPDK-NVAGIVAKKMID   69 (163)
T ss_dssp             EEEEEEEEEEECT-----------GGGTTTEEEEEEEEEEEEEEEEESSSSEEEEESCTTSCCCTTT-SHHHHHHHHHHH
T ss_pred             EEEEEEECCHHHC-----------CCCHHHHHHHHCCCCCEEEEEECCCCEEEEEECCCCCCCCHHH-HHHHHHHHHHHH
T ss_conf             7999983307755-----------5467676512247865899999789828997448525775442-247899888998


Q ss_pred             HC--CCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHC------CC--C-CHHHHCCCCHHC
Q ss_conf             61--9439999850233211012322479999999999818899988999886521------35--3-034310562002
Q gi|254781016|r  103 FS--KVYFLIETSNNIPTKAGLASSASGFAALTLALFRIYSIPEKSESLSRVARLG------SG--S-ACRSFYRGFCEW  171 (355)
Q Consensus       103 ~~--~~~~~I~S~N~fPtaaGLASSASgfAALa~Al~~~~~~~~~~~~lS~lARlG------SG--S-A~RSi~GG~v~W  171 (355)
                      ..  ...++|...+++|.++||+||||..+|+..|++++++++++.+++..+|+++      +|  + .+-++|||++.-
T Consensus        70 ~~~~~~~~~i~i~~~IP~gaGLGsSSA~a~a~l~aln~l~~~~ls~~~l~~~A~~~e~~~~g~~~gddv~~~~~GG~~~~  149 (163)
T d1h72c1          70 DFNIGKGVKITIKKGVKAGSGLGSSAASSAGTAYAINELFKLNLDKLKLVDYASYGELASSGAKHADNVAPAIFGGFTMV  149 (163)
T ss_dssp             HTTCCCEEEEEEECSSCTTSSSCHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHSSCCCTTHHHHHHCSEEEE
T ss_pred             HCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCEEEE
T ss_conf             62998778999960641356657507889999999999837998979999999998776537877147678760997999


No 4  
>d1kkha1 d.14.1.5 (A:1-180) Mevalonate kinase {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=98.78  E-value=8.4e-08  Score=71.74  Aligned_cols=145  Identities=25%  Similarity=0.291  Sum_probs=90.4

Q ss_pred             CCCEEEECCCCEEEEECCCCCCHHHCCCCCCCEEEEECCCCEEEEEEECCCCCCEEEEC--CE-----------ECCCCC
Q ss_conf             76378974884248811677670117578984346812781079999717888579987--87-----------256652
Q gi|254781016|r   21 NEKSSAFLPSNIALCKYWGKRDSKLNLPLNNSLSLSLGHLGTITHITVIDSDADCIILN--GQ-----------KISSQS   87 (355)
Q Consensus        21 ~~~~ta~ap~NIALIKYWGK~d~~l~lP~n~SiS~TL~~~~T~T~v~~~~~~~d~~~ln--G~-----------~~~~~~   87 (355)
                      ..+..++||-.|-|+   |-+-.   +==.+.|++++| .+++.+++  +..++.+.++  +.           ......
T Consensus         3 ~~~~~~~aPgkv~L~---GEh~~---~~G~~~l~~aI~-~~~~v~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~   73 (180)
T d1kkha1           3 GSHMIIETPSKVILF---GEHAV---VYGYRAISMAID-LTSTIEIK--ETQEDEIILNLNDLNKSLGLNLNEIKNINPN   73 (180)
T ss_dssp             TCCEEEEEEEEEEEE---CTTGG---GGTCCEEEEEEE-EEEEEEEE--ECCSSEEEEEETTTTEEEEEETTTGGGCCGG
T ss_pred             CCEEEEECCEEEEEE---CCCEE---ECCCEEEEEEEE-CEEEEEEE--ECCCCCCCEEEECCCCEEEECCHHCCCCCCC
T ss_conf             976999838799997---46868---729879999970-87999999--8898775214403464145420011235832


Q ss_pred             --HHHHHHH----HHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH------
Q ss_conf             --0689999----9974216761943999985023321101232247999999999981889998899988652------
Q gi|254781016|r   88 --SFFKKTT----QFCDLFRQFSKVYFLIETSNNIPTKAGLASSASGFAALTLALFRIYSIPEKSESLSRVARL------  155 (355)
Q Consensus        88 --~~~~ri~----~~l~~~r~~~~~~~~I~S~N~fPtaaGLASSASgfAALa~Al~~~~~~~~~~~~lS~lARl------  155 (355)
                        ...+.+.    .++++........+.|....++|.++||+||||..+|++.|+..+++++++.+++..+|..      
T Consensus        74 ~~~~~~~~~~~i~~~~~~~~~~~~~g~~i~i~s~iP~g~GLGSSaa~~va~~~al~~~~~~~l~~~~l~~la~~~E~~~~  153 (180)
T d1kkha1          74 NFGDFKYCLCAIKNTLDYLNIEPKTGFKINISSKIPISCGLGSSASITIGTIKAVSGFYNKELKDDEIAKLGYMVEKEIQ  153 (180)
T ss_dssp             GSGGGHHHHHHHHHHHHHTTCCCCSCEEEEEEECSCSSSSSCHHHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHS
T ss_pred             CHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHC
T ss_conf             00348999999999999858899987799994150100375654003999999999985767998999999999999868


Q ss_pred             CCCC---CHHHHCCCCHHCCCC
Q ss_conf             1353---034310562002578
Q gi|254781016|r  156 GSGS---ACRSFYRGFCEWICG  174 (355)
Q Consensus       156 GSGS---A~RSi~GG~v~W~~g  174 (355)
                      |.||   .+-++|||++.+..+
T Consensus       154 g~~sg~D~~~~~~Gg~i~~~~~  175 (180)
T d1kkha1         154 GKASITDTSTITYKGILEIKNN  175 (180)
T ss_dssp             SSCCSHHHHHHHHCSEEEESSS
T ss_pred             CCCCHHHHHHHHHCCEEEEECC
T ss_conf             9987899999981997999579


No 5  
>d1k47a1 d.14.1.5 (A:1-194) Phosphomevalonate kinase (PMK) {Streptococcus pneumoniae r6 [TaxId: 171101]}
Probab=98.40  E-value=2.8e-06  Score=61.10  Aligned_cols=126  Identities=17%  Similarity=0.147  Sum_probs=81.1

Q ss_pred             HCC-CCCCCEEEEECCCCEEEEEEECCCCCCEEEECCEECC------CCCHHHHHHHHHHHHHHHHCC---CEEEEEEEC
Q ss_conf             175-7898434681278107999971788857998787256------652068999999742167619---439999850
Q gi|254781016|r   45 LNL-PLNNSLSLSLGHLGTITHITVIDSDADCIILNGQKIS------SQSSFFKKTTQFCDLFRQFSK---VYFLIETSN  114 (355)
Q Consensus        45 l~l-P~n~SiS~TL~~~~T~T~v~~~~~~~d~~~lnG~~~~------~~~~~~~ri~~~l~~~r~~~~---~~~~I~S~N  114 (355)
                      -.+ |=.+.|++.+|. +++.+++  +.+..++........      ........+.+++..+-...+   ..+.|.-..
T Consensus        17 aVv~~G~~ala~ai~~-~~~v~v~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s   93 (194)
T d1k47a1          17 AILEPGQLALIKDIPI-YMRAEIA--FSDSYRIYSDMFDFAVDLRPNPDYSLIQETIALMGDFLAVRGQNLRPFSLAIYG   93 (194)
T ss_dssp             GGGSTTCEEEEEEEEE-EEEEEEE--ECSSCEEEEEC---------CCCHHHHHHHHHHHHHHHHHTTCCCCCEEEEEES
T ss_pred             EEECCCCEEEEEEEEC-EEEEEEE--ECCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEC
T ss_conf             8960898199999804-5999999--888862775203433112567411688999999999999708988871899974


Q ss_pred             CCCCCC---HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH------CCCCC---HHHHCCCCHHCCC
Q ss_conf             233211---01232247999999999981889998899988652------13530---3431056200257
Q gi|254781016|r  115 NIPTKA---GLASSASGFAALTLALFRIYSIPEKSESLSRVARL------GSGSA---CRSFYRGFCEWIC  173 (355)
Q Consensus       115 ~fPtaa---GLASSASgfAALa~Al~~~~~~~~~~~~lS~lARl------GSGSA---~RSi~GG~v~W~~  173 (355)
                      +.|.++   ||+|||+...|++.|+.++++++++.+++..+|..      |.||+   +-|+|||++....
T Consensus        94 ~ip~~~~~~GLGSSAA~~va~~~al~~~~~~~ls~~~i~~lA~~~e~~~~g~~SG~D~a~s~~GG~i~y~~  164 (194)
T d1k47a1          94 KMEREGKKFGLGSSGSVVVLVVKALLALYNLSVDQNLLFKLTSAVLLKRGDNGSMGDLACIAAEDLVLYQS  164 (194)
T ss_dssp             HHHHSTTSSCSCHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTTCCSCCHHHHHHHHTSCEEEEC
T ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEE
T ss_conf             68666677764422789999999999870778999999999999999863588853345887498499982


No 6  
>d1kvka1 d.14.1.5 (A:1-225) Mevalonate kinase {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=97.90  E-value=6.6e-05  Score=51.50  Aligned_cols=69  Identities=25%  Similarity=0.228  Sum_probs=52.9

Q ss_pred             EEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC---------------HHHHHHHHHH--------CCC-CCHH
Q ss_conf             399998502332110123224799999999998188999---------------8899988652--------135-3034
Q gi|254781016|r  107 YFLIETSNNIPTKAGLASSASGFAALTLALFRIYSIPEK---------------SESLSRVARL--------GSG-SACR  162 (355)
Q Consensus       107 ~~~I~S~N~fPtaaGLASSASgfAALa~Al~~~~~~~~~---------------~~~lS~lARl--------GSG-SA~R  162 (355)
                      .+.|...-++|..+||+||||-..|++.|+..+++...+               .+++.+||..        +|| ..+=
T Consensus       128 g~~i~i~s~lP~g~GLGSSAAl~va~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lA~~~E~~~~g~~SG~D~a~  207 (225)
T d1kvka1         128 SLDIMVWSELPPGAGLGSSAAYSVCVAAALLTACEEVTNPLKDRGSIGSWPEEDLKSINKWAYEGERVIHGNPSGVDNSV  207 (225)
T ss_dssp             CEEEEEEESSCTTSSSCHHHHHHHHHHHHHHHHTTSSCCGGGGCCSEECCCHHHHHHHHHHHHHHHHHHHSSCCSHHHHH
T ss_pred             CEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
T ss_conf             86999967888874535215889999999999737666742110000344455599999999999998679975898999


Q ss_pred             HHCCCCHHCCCCC
Q ss_conf             3105620025789
Q gi|254781016|r  163 SFYRGFCEWICGT  175 (355)
Q Consensus       163 Si~GG~v~W~~g~  175 (355)
                      |+|||++...+|.
T Consensus       208 ~~~Gg~i~f~~g~  220 (225)
T d1kvka1         208 STWGGALRYQQGK  220 (225)
T ss_dssp             HHHCSEEEESSSC
T ss_pred             HHCCCEEEEECCC
T ss_conf             9669669995899


No 7  
>d1piea1 d.14.1.5 (A:9-213) Galactokinase {Lactococcus lactis [TaxId: 1358]}
Probab=97.85  E-value=0.0001  Score=50.19  Aligned_cols=153  Identities=14%  Similarity=0.130  Sum_probs=85.4

Q ss_pred             HHHHHHCCCCCCCCCEEEECCCCEEEEECCCCCCHHHCCCCCCCEEEEECCCCEEEEEEECCCCCCEE-----------E
Q ss_conf             88874034678776378974884248811677670117578984346812781079999717888579-----------9
Q gi|254781016|r    9 LHRYIGECNPKINEKSSAFLPSNIALCKYWGKRDSKLNLPLNNSLSLSLGHLGTITHITVIDSDADCI-----------I   77 (355)
Q Consensus         9 ~~~~~~~~~~~~~~~~ta~ap~NIALIKYWGK~d~~l~lP~n~SiS~TL~~~~T~T~v~~~~~~~d~~-----------~   77 (355)
                      ...|...-+.. ..-..+.||--|=|+==|-=+..-      +.|.++++ .++..++...++.+-++           .
T Consensus         7 ~~~f~~~f~~~-~~~~~~~aPgRv~L~GeH~Dy~gg------~vl~~AI~-~~~~v~~~~~~d~~i~i~s~~~~~~~~~~   78 (205)
T d1piea1           7 TEKFAEVFGDT-KEVEYFFSPGRINLIGEHTDYNGG------YVFPASIT-IGTTGLARLREDKKVKLYSENFPKLGVIE   78 (205)
T ss_dssp             HHHHHHHHSCC-CSCEEEEEEEEEEEECCSCTTTTC------EEEEEEEE-EEEEEEEEECSSSEEEEEETTCGGGCCEE
T ss_pred             HHHHHHHHCCC-CCEEEEECCEEEEEECCCEEECCC------EEECCCCC-CEEEEEEECCCCCEEEEECCCCCCCCEEE
T ss_conf             99999986998-652699745479985488057797------75023440-03999972378882455338888653131


Q ss_pred             ECCEEC--CCCCHHHHHHHHHHHHHHHHC---CCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf             878725--665206899999974216761---943999985023321101232247999999999981889998899988
Q gi|254781016|r   78 LNGQKI--SSQSSFFKKTTQFCDLFRQFS---KVYFLIETSNNIPTKAGLASSASGFAALTLALFRIYSIPEKSESLSRV  152 (355)
Q Consensus        78 lnG~~~--~~~~~~~~ri~~~l~~~r~~~---~~~~~I~S~N~fPtaaGLASSASgfAALa~Al~~~~~~~~~~~~lS~l  152 (355)
                      .+-...  ........-+...+..+++..   ...+.|...-++|.++||+||||--.|++.|+..+++++++..++..+
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~G~~i~i~s~iP~gsGLgSSAAl~va~~~al~~~~~~~~~~~~ia~~  158 (205)
T d1piea1          79 FDLDEVEKKDGELWSNYVKGMIVMLKGAGYEIDKGFELLIKGEIPTASGLSSSASLELLVGVVLDDLFNLNVPRLELVQL  158 (205)
T ss_dssp             EETTCTTSCCTTCTHHHHHHHHHHHHHTTCCCCSCEEEEEEECSCTTSSSCHHHHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf             13311245666521578999999998717865567678871687552455731789999999999983899877999999


Q ss_pred             HHHC----CCC------CHHHHCCCCH
Q ss_conf             6521----353------0343105620
Q gi|254781016|r  153 ARLG----SGS------ACRSFYRGFC  169 (355)
Q Consensus       153 ARlG----SGS------A~RSi~GG~v  169 (355)
                      |+..    -|.      -+-|++||+-
T Consensus       159 a~~~E~~~~g~~~G~~Dq~as~~g~~~  185 (205)
T d1piea1         159 GQKTENDYIGVNSGILDQFAIGFGEVK  185 (205)
T ss_dssp             HHHHHHHTTCCCCCSHHHHHHHHCBTT
T ss_pred             HHHHHHHHCCCCCCHHHHHHHHHCCCC
T ss_conf             999998454898737899999855788


No 8  
>d1wuua1 d.14.1.5 (A:2-216) Galactokinase {Human (Homo sapiens) [TaxId: 9606]}
Probab=97.79  E-value=0.00019  Score=48.29  Aligned_cols=147  Identities=16%  Similarity=0.091  Sum_probs=85.7

Q ss_pred             HHHHHHHCCCCCCCCCEEEECCCCEEEEE----CCCCCCHHHCCCCCCCEEEEECCCCEEEEEEECCCCCCEE-------
Q ss_conf             88887403467877637897488424881----1677670117578984346812781079999717888579-------
Q gi|254781016|r    8 ILHRYIGECNPKINEKSSAFLPSNIALCK----YWGKRDSKLNLPLNNSLSLSLGHLGTITHITVIDSDADCI-------   76 (355)
Q Consensus         8 ~~~~~~~~~~~~~~~~~ta~ap~NIALIK----YWGK~d~~l~lP~n~SiS~TL~~~~T~T~v~~~~~~~d~~-------   76 (355)
                      ....|...-+..+.  ..++||--|-|+=    |-|.          +.|++.++ .++..++...++..-++       
T Consensus        15 ~~~~F~~~fg~~p~--~i~~APGrv~L~GEH~dy~Gg----------~vl~~Ai~-~~~~v~~~~~~d~~i~v~s~~~~~   81 (215)
T d1wuua1          15 ARRAFREEFGAEPE--LAVSAPGRVNLIGEHTDYNQG----------LVLPMALE-LMTVLVGSPRKDGLVSLLTTSEGA   81 (215)
T ss_dssp             HHHHHHHHHSSCCS--EEEEEEEEEEEECTTCGGGTC----------EEEEEEEE-EEEEEEEEEETTCEEEEEECCSSS
T ss_pred             HHHHHHHHHCCCCC--EEEECCEEEEEECCCEEECCC----------EEEEEECC-CCEEEEEEECCCCEEEEEECCCCC
T ss_conf             99999998699977--899855699996588265796----------67766326-738999985699879999866787


Q ss_pred             --------EECCEECCCC---CHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             --------9878725665---20689999997421676194399998502332110123224799999999998188999
Q gi|254781016|r   77 --------ILNGQKISSQ---SSFFKKTTQFCDLFRQFSKVYFLIETSNNIPTKAGLASSASGFAALTLALFRIYSIPEK  145 (355)
Q Consensus        77 --------~lnG~~~~~~---~~~~~ri~~~l~~~r~~~~~~~~I~S~N~fPtaaGLASSASgfAALa~Al~~~~~~~~~  145 (355)
                              .++.......   ......+...+..++......+.|...-++|.++||+||||-..|++.|+..++++.++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~i~S~iP~gaGLgSSAA~~val~~al~~~~~~~~~  161 (215)
T d1wuua1          82 DEPQRLQFPLPTAQRSLEPGTPRWANYVKGVIQYYPAAPLPGFSAVVVSSVPLGGGLSSSASLEVATYTFLQQLCPDSGT  161 (215)
T ss_dssp             CSCSEEEEECCCSSCCCCCCSSGGGHHHHHHHHHCSSSCCCEEEEEEEECSCTTSSSCHHHHHHHHHHHHHHHHSCCCSC
T ss_pred             CCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCC
T ss_conf             75307851144101223446512666655667663257888758998257556764265068788889888887402344


Q ss_pred             HHHHHHHHHHC----CCCC------HHHHCCC
Q ss_conf             88999886521----3530------3431056
Q gi|254781016|r  146 SESLSRVARLG----SGSA------CRSFYRG  167 (355)
Q Consensus       146 ~~~lS~lARlG----SGSA------~RSi~GG  167 (355)
                      ..++..+|+..    =|..      +-|+||+
T Consensus       162 ~~~la~~a~~~E~~~~G~~~G~mDq~as~~g~  193 (215)
T d1wuua1         162 IAARAQVCQQAEHSFAGMPCGIMDQFISLMGQ  193 (215)
T ss_dssp             HHHHHHHHHHHHHHHTCCCCCSHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCC
T ss_conf             78999999999997607988478999998177


No 9  
>d1oj4a1 d.14.1.5 (A:1-163) 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase IspE {Escherichia coli [TaxId: 562]}
Probab=97.74  E-value=0.00028  Score=47.06  Aligned_cols=71  Identities=14%  Similarity=0.132  Sum_probs=57.0

Q ss_pred             CEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHCCCCHHCCCCCCC
Q ss_conf             439999850233211012322479999999999818899988999886521353034310562002578987
Q gi|254781016|r  106 VYFLIETSNNIPTKAGLASSASGFAALTLALFRIYSIPEKSESLSRVARLGSGSACRSFYRGFCEWICGTDQ  177 (355)
Q Consensus       106 ~~~~I~S~N~fPtaaGLASSASgfAALa~Al~~~~~~~~~~~~lS~lARlGSGSA~RSi~GG~v~W~~g~~~  177 (355)
                      ..++|.-+-|+|.+|||+..+|-.||+.+++.+.++++++.+++..+|...-.--.-.++|+ ..|..|.++
T Consensus        88 ~~~~I~i~KnIP~gaGLGGGSsnAAa~L~~l~~~~~~~l~~~~l~~ia~~iGsDvpffl~~~-~a~~~G~Ge  158 (163)
T d1oj4a1          88 SGANISIDKRLPMGGGLGGGSSNAATVLVALNHLWQCGLSMDELAEMGLTLGADVPVFVRGH-AAFAEGVGE  158 (163)
T ss_dssp             CEEEEEEECCSCSSTTSCHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHGGGCTTHHHHHHCB-CEEEETTTT
T ss_pred             CCEEEEEEEEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCCCC-CEEEEECCC
T ss_conf             76499998525651035689715999999864222237999999999988099414320598-789997697


No 10 
>d1s4ea1 d.14.1.5 (A:5-180) Galactokinase {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=97.61  E-value=3.2e-05  Score=53.75  Aligned_cols=63  Identities=19%  Similarity=0.170  Sum_probs=51.2

Q ss_pred             EEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCC----C--C----CHHHHCCCCH
Q ss_conf             399998502332110123224799999999998188999889998865213----5--3----0343105620
Q gi|254781016|r  107 YFLIETSNNIPTKAGLASSASGFAALTLALFRIYSIPEKSESLSRVARLGS----G--S----ACRSFYRGFC  169 (355)
Q Consensus       107 ~~~I~S~N~fPtaaGLASSASgfAALa~Al~~~~~~~~~~~~lS~lARlGS----G--S----A~RSi~GG~v  169 (355)
                      .+.|...-++|.++||+||||-..|++.|+.++++++++..++..+|+...    |  +    -+-|+|||+.
T Consensus        85 g~~i~i~s~iP~gsGLgSSAAl~va~~~al~~~~~~~~~~~~l~~~a~~~E~~~~g~~~G~~Dq~~~~~gg~~  157 (176)
T d1s4ea1          85 GLKGKITGDLPLGAGLSSSASFEVGILEVLNQLYNLNIDPLKKALLAKKAENEFVGVPCGILDQFAVVFGKKD  157 (176)
T ss_dssp             CBC-CEEESSCTTSSSCHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSCCCCCSHHHHHHHHCCTT
T ss_pred             CEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCC
T ss_conf             8489983574567664560789999999999985236998999999999988762898654879999856888


No 11 
>d1ueka1 d.14.1.5 (A:1-148) 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase IspE {Thermus thermophilus [TaxId: 274]}
Probab=97.27  E-value=0.00059  Score=44.86  Aligned_cols=135  Identities=18%  Similarity=0.148  Sum_probs=80.7

Q ss_pred             EECCCCEEEEECCCCCCHHHCCCCCCCEEEEECCCCEEEEEEECCCCCCEEEECCEECCCCCHHHHHHHHHHHHHHHHCC
Q ss_conf             97488424881167767011757898434681278107999971788857998787256652068999999742167619
Q gi|254781016|r   26 AFLPSNIALCKYWGKRDSKLNLPLNNSLSLSLGHLGTITHITVIDSDADCIILNGQKISSQSSFFKKTTQFCDLFRQFSK  105 (355)
Q Consensus        26 a~ap~NIALIKYWGK~d~~l~lP~n~SiS~TL~~~~T~T~v~~~~~~~d~~~lnG~~~~~~~~~~~ri~~~l~~~r~~~~  105 (355)
                      |-|-.|+.| +=-|||+.-  .---.|+=..+ +++-+-+++..+   +.+.+.|..  .++   .-|.+.++.+++..+
T Consensus         5 aPAKINL~L-~V~~kr~dG--yH~l~s~~~~i-~l~D~i~i~~~~---~~~~~~~p~--~~~---Nlv~ka~~~l~~~~~   72 (148)
T d1ueka1           5 APAKVNLGL-SVRFRREDG--YHELHTLFAPF-SLADRLVVEPVS---SGLHFQGPY--GRE---NLAYRAASLYLEAAG   72 (148)
T ss_dssp             EEEEEEEEE-EEEEECTTS--SEEEEEEEEEE-EEEEEEEEEEES---SCEEEESTT--GGG---SHHHHHHHHHHHHTT
T ss_pred             CCCEEEEEE-EECCCCCCC--CCEEEEEEEEE-ECCCCCEEECCC---CCCCCCCCC--CCC---CHHHHHHHHHHHHCC
T ss_conf             130380457-637627898--55032799998-976512897146---641125654--432---133334556677518


Q ss_pred             C--EEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH-CCCCCHHHHCCCCHHCCCCCCC
Q ss_conf             4--3999985023321101232247999999999981889998899988652-1353034310562002578987
Q gi|254781016|r  106 V--YFLIETSNNIPTKAGLASSASGFAALTLALFRIYSIPEKSESLSRVARL-GSGSACRSFYRGFCEWICGTDQ  177 (355)
Q Consensus       106 ~--~~~I~S~N~fPtaaGLASSASgfAALa~Al~~~~~~~~~~~~lS~lARl-GSGSA~RSi~GG~v~W~~g~~~  177 (355)
                      .  .+.|.-+-|+|.+|||++++|-.||+..++++.++.+++..   .+|+. || -..-.++|+ ..|..|.++
T Consensus        73 ~~~~~~I~i~K~IP~~aGLGGGSsnAAa~l~~l~~~~~~~~~l~---~la~~iGs-DVPffl~~~-~~~~~G~Ge  142 (148)
T d1ueka1          73 QPGGVRILLEKRIPEGAGLGGGSSDAAQVLLALQALYPAEVDLF---ALARTLGA-DVPFFLLGR-GAEARGVGE  142 (148)
T ss_dssp             CCCEEEEEEECCSCSSSSSCHHHHHHHHHHHHHHHHSCSCCCHH---HHHHHHCT-THHHHHHCS-EEEEETTTT
T ss_pred             CCCEEEEEEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHH---HHHCCCCC-CCHHHCCCC-CEEEEEECC
T ss_conf             87518999982378863116783045469999988613556788---86245699-712423598-789998282


No 12 
>d1h72c2 d.58.26.1 (C:168-300) Homoserine kinase {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=96.50  E-value=0.0061  Score=37.74  Aligned_cols=115  Identities=9%  Similarity=0.049  Sum_probs=71.4

Q ss_pred             CCEEEEEEECCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCE
Q ss_conf             42158999728766752105679887618568999973055099999999809999999999999998999870389956
Q gi|254781016|r  193 DLRIGLLKIIDREKKIGSREAMEITRHHSPFFTQWTQQISTDLAHIKQAIIDQDFIKLGEVAEKNALKMHATMIAASPPL  272 (355)
Q Consensus       193 dl~~~i~iv~~~~K~vsSt~gm~~~v~tSp~y~~r~~~~~~~~~~~~~ai~~~Df~~l~~i~e~dal~mHa~~~~s~P~~  272 (355)
                      ++++++++.+.+-    ||.-+........-++..+. .-.+...+..++..+|++.+++.+++|  .+|.-.....   
T Consensus         2 ~l~~vl~~P~~~v----sT~~aR~~LP~~~~~~dav~-n~~~~~~lv~al~~~d~~l~~~~~~~D--~l~Ep~r~~l---   71 (133)
T d1h72c2           2 KLDILIAIPNISI----NTKEAREILPKAVGLKDLVN-NVGKACGMVYALYNKDKSLFGRYMMSD--KVIEPVRGKL---   71 (133)
T ss_dssp             CCCEEEECCSSCC----CHHHHHHTSCSCCCHHHHHH-HHHHHHHHHHHHHTTCHHHHHHHHTTC--CSSHHHHHTT---
T ss_pred             EEEEEEEECCCCC----CHHHHHHHCHHHCCHHHHHH-HHHHHHHHHHHHHCCCHHHHHHHHHCC--CCCCCEECCC---
T ss_conf             6699999899988----58999986654397999987-042148899987406788999998468--4447100104---


Q ss_pred             EEECHHHHHHHHHHHHHHHCCCEEEEEE-CCCCEEEEEECHHHHHHHHHHHHHC
Q ss_conf             8657889999999999742896199997-7798179995589899999997632
Q gi|254781016|r  273 LYWQKETIQGMERVWDARQQSIPIYFTL-DAGPNLKLLFTHKIEETIKQFFPEI  325 (355)
Q Consensus       273 ~Y~~~~t~~ii~~v~~~R~~g~~v~fT~-DAGPNv~il~~~~~~~~i~~~l~~i  325 (355)
                         -|+..++.+.   ++. | ..+++| .+||.|..||..++.+.+.+.+.+.
T Consensus        72 ---~P~~~~ik~~---l~~-g-a~~~~lSGSGPTv~al~~~~~~~~~~~~l~~~  117 (133)
T d1h72c2          72 ---IPNYFKIKEE---VKD-K-VYGITISGSGPSIIAFPKEEFIDEVENILRDY  117 (133)
T ss_dssp             ---STTHHHHHHH---HTT-T-EEEEEECTTSSCEEEEECGGGHHHHHHHHHHH
T ss_pred             ---CCCHHHHHHH---HHC-C-CEEEEEECCCCCEEEEECHHHHHHHHHHHHHH
T ss_conf             ---9736999998---535-8-66999967997079983737899999999998


No 13 
>d1k47a2 d.58.26.4 (A:195-329) Phosphomevalonate kinase (PMK) {Streptococcus pneumoniae r6 [TaxId: 171101]}
Probab=95.32  E-value=0.1  Score=29.20  Aligned_cols=123  Identities=13%  Similarity=0.051  Sum_probs=79.8

Q ss_pred             CCCEEEEEEECCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             64215899972876675210567988761856899997305509999999980999999999999999899987038995
Q gi|254781016|r  192 PDLRIGLLKIIDREKKIGSREAMEITRHHSPFFTQWTQQISTDLAHIKQAIIDQDFIKLGEVAEKNALKMHATMIAASPP  271 (355)
Q Consensus       192 ~dl~~~i~iv~~~~K~vsSt~gm~~~v~tSp~y~~r~~~~~~~~~~~~~ai~~~Df~~l~~i~e~dal~mHa~~~~s~P~  271 (355)
                      |.+..-.++..++..  .||..|...++. -+++.-+.....-..++.+|++++|++.|++++..+-..+-.+-    |.
T Consensus         2 ~~l~~~lll~~TG~~--~sT~~lv~~v~~-~~~~~~l~~~~~~v~~~~~al~~~d~~~l~~~m~~~~~ll~~l~----~~   74 (135)
T d1k47a2           2 PTLECDFLVGWTKEV--AVSSHMVQQIKQ-NINQNFLTSSKETVVSLVEALEQGKSEKIIEQVEVASKLLEGLS----TD   74 (135)
T ss_dssp             CCSCCEEEEEECCCC--CCCHHHHHHHHT-TCCHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHC----TT
T ss_pred             CCCCCEEEEEECCCC--CCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCC----CC
T ss_conf             999863899844993--547999999999-97767999999999999999992877999999999999998635----56


Q ss_pred             EEEECHHHHHHHHHHHHHHHCCCEEEEEECCCC--EEEEEEC-HHHHHHHHHHHHHCCC
Q ss_conf             686578899999999997428961999977798--1799955-8989999999763210
Q gi|254781016|r  272 LLYWQKETIQGMERVWDARQQSIPIYFTLDAGP--NLKLLFT-HKIEETIKQFFPEITI  327 (355)
Q Consensus       272 ~~Y~~~~t~~ii~~v~~~R~~g~~v~fT~DAGP--Nv~il~~-~~~~~~i~~~l~~i~~  327 (355)
                      +  .+|.--+++   ...++.|...-.| .||=  .+.+|+. +++.+.|.+.+.+.++
T Consensus        75 i--~~~~l~~l~---~~a~~~g~~ak~~-GaGgGG~~i~l~~~~~~~~~i~~~~~~~Gi  127 (135)
T d1k47a2          75 I--YTPLLRQLK---EASQDLQAVAKSS-GAGGGDCGIALSFDAQSTKTLKNRWADLGI  127 (135)
T ss_dssp             T--SCHHHHHHH---HTTTTSSEEEEEC-SSCSSSEEEEEECSHHHHHHHHHHHHHTTC
T ss_pred             C--CCHHHHHHH---HHHHHHCCCHHCC-CCCCCCEEEEEECCHHHHHHHHHHHHHCCC
T ss_conf             7--880789999---9999706002014-676788589986283149999999998798


No 14 
>d1s4ea2 d.58.26.7 (A:181-351) Galactokinase {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=90.34  E-value=0.57  Score=23.99  Aligned_cols=84  Identities=12%  Similarity=0.063  Sum_probs=55.5

Q ss_pred             HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHHCCCEEEEEECCCCE--EEEE
Q ss_conf             55099999999809999999999999998999870389956865788999999999974289619999777981--7999
Q gi|254781016|r  232 STDLAHIKQAIIDQDFIKLGEVAEKNALKMHATMIAASPPLLYWQKETIQGMERVWDARQQSIPIYFTLDAGPN--LKLL  309 (355)
Q Consensus       232 ~~~~~~~~~ai~~~Df~~l~~i~e~dal~mHa~~~~s~P~~~Y~~~~t~~ii~~v~~~R~~g~~v~fT~DAGPN--v~il  309 (355)
                      ..+..+..+|++++||+.||+++-.+-..|-..+-.|       +|+.-.+++...   +.|.--+==+.+|--  +..|
T Consensus        65 n~Rv~~~~~al~~~d~~~~G~lm~~sh~sl~~~~evS-------~~eld~lv~~a~---~~Ga~GaRmtGgGfGG~viaL  134 (171)
T d1s4ea2          65 NARVLEVRDALKEGDIEKVGKILTTAHWDLAENYRVS-------CEELDFFVKKAM---ELGAYGARLTGAGFGGSAIAL  134 (171)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCC-------CHHHHHHHHHHH---HTTCSEEEECSSCSEEEEEEE
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCC-------CHHHHHHHHHHH---HCCCCCEEEECCCCCCEEEEE
T ss_conf             8877889998641558899999999999898856058-------878999999986---436674255238998079998


Q ss_pred             ECHHHHHHHHHHHHHC
Q ss_conf             5589899999997632
Q gi|254781016|r  310 FTHKIEETIKQFFPEI  325 (355)
Q Consensus       310 ~~~~~~~~i~~~l~~i  325 (355)
                      ++++..+.+.+.+.+.
T Consensus       135 v~~~~~~~~~~~i~~~  150 (171)
T d1s4ea2         135 VDKDKAKTIGDAILRE  150 (171)
T ss_dssp             EEGGGHHHHHHHHHHH
T ss_pred             ECHHHHHHHHHHHHHH
T ss_conf             5577799999999999


No 15 
>d1piea2 d.58.26.7 (A:214-396) Galactokinase {Lactococcus lactis [TaxId: 1358]}
Probab=85.83  E-value=1.1  Score=22.08  Aligned_cols=83  Identities=12%  Similarity=0.079  Sum_probs=52.6

Q ss_pred             HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHH-CCCEEEEEECCC--CEEEE
Q ss_conf             550999999998099999999999999989998703899568657889999999999742-896199997779--81799
Q gi|254781016|r  232 STDLAHIKQAIIDQDFIKLGEVAEKNALKMHATMIAASPPLLYWQKETIQGMERVWDARQ-QSIPIYFTLDAG--PNLKL  308 (355)
Q Consensus       232 ~~~~~~~~~ai~~~Df~~l~~i~e~dal~mHa~~~~s~P~~~Y~~~~t~~ii~~v~~~R~-~g~~v~fT~DAG--PNv~i  308 (355)
                      ..+..+..+|++++|++.||+++-.+-..|-..+..|.       |+.-.+   |...++ .|.--+==+.+|  =-|..
T Consensus        74 n~Rv~~a~~al~~~d~~~~G~lm~~Sh~sl~~~~evs~-------~elD~L---v~~a~~~~G~~GaRmtGgGfGGcvia  143 (183)
T d1piea2          74 NNRTKIAQKAFVAGNLTKFGELLNASHASLKDDYEVTG-------LELDTL---AETAQKQAGVLGARMTGAGFGGCAIA  143 (183)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTSCCCC-------HHHHHH---HHHHHHSTTEEEEEECSSCSSSEEEE
T ss_pred             HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCC-------CHHHHH---HHHHHHHCCCEEEECCCCCCCCEEEE
T ss_conf             98878756555303599999999998999999733799-------158899---99999737990864453688846899


Q ss_pred             EECHHHHHHHHHHHHH
Q ss_conf             9558989999999763
Q gi|254781016|r  309 LFTHKIEETIKQFFPE  324 (355)
Q Consensus       309 l~~~~~~~~i~~~l~~  324 (355)
                      |.+++..+.+.+.+.+
T Consensus       144 lv~~~~~~~~~~~i~~  159 (183)
T d1piea2         144 LVAHDNVSAFRKAVGQ  159 (183)
T ss_dssp             EEEGGGHHHHHHHHHH
T ss_pred             EECHHHHHHHHHHHHH
T ss_conf             9658779999999999


No 16 
>d1kkha2 d.58.26.3 (A:181-317) Mevalonate kinase {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=73.53  E-value=2.6  Score=19.35  Aligned_cols=110  Identities=12%  Similarity=0.052  Sum_probs=61.5

Q ss_pred             EECCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHH
Q ss_conf             97287667521056798876185689999730550999999998099999999999999989998703899568657889
Q gi|254781016|r  200 KIIDREKKIGSREAMEITRHHSPFFTQWTQQISTDLAHIKQAIIDQDFIKLGEVAEKNALKMHATMIAASPPLLYWQKET  279 (355)
Q Consensus       200 iv~~~~K~vsSt~gm~~~v~tSp~y~~r~~~~~~~~~~~~~ai~~~Df~~l~~i~e~dal~mHa~~~~s~P~~~Y~~~~t  279 (355)
                      ++....+.-++.+..+. |....-.+.-++...   .-..+|++.+|++.||++...+-..+-++  ...      +|..
T Consensus        15 v~~~t~~~~~t~~~v~~-v~~~~~~~~i~~~~~---~~~~~al~~~d~~~lg~lm~~~~~~l~~l--gvs------~~~i   82 (137)
T d1kkha2          15 IVYAEKRKKKTAELVNE-VAKIENKDEIFKEID---KVIDEALKIKNKEDFGKLMTKNHELLKKL--NIS------TPKL   82 (137)
T ss_dssp             EEEEECCCSCHHHHHHH-HHTCTTHHHHHHHHH---HHHHHHHHCCSHHHHHHHHHHHHHHHHTT--TCC------CHHH
T ss_pred             EEECCCCCCHHHHHHHH-HHHHHHHHHHHHHHH---HHHHHHHHCCCHHHHHHHHHHHHHHHHHH--CCC------CHHH
T ss_conf             99736833429999999-999976229999999---99999998289999999999999999870--589------5899


Q ss_pred             HHHHHHHHHHHHCCCEEEEEECCC--CEEEEEECHHHHHHHHHHHHHC
Q ss_conf             999999999742896199997779--8179995589899999997632
Q gi|254781016|r  280 IQGMERVWDARQQSIPIYFTLDAG--PNLKLLFTHKIEETIKQFFPEI  325 (355)
Q Consensus       280 ~~ii~~v~~~R~~g~~v~fT~DAG--PNv~il~~~~~~~~i~~~l~~i  325 (355)
                      -.+++..   ++.|..+ =-..||  =-+..|++++..+.+.+.+..-
T Consensus        83 d~l~~~~---~~~g~Ga-KitGAGgGG~~ial~~~~~~~~~~~~l~~~  126 (137)
T d1kkha2          83 DRIVDIG---NRFGFGA-KLTGAGGGGCVIILVNEEKEKELLKELNKE  126 (137)
T ss_dssp             HHHHHHH---HHHSSEE-EECSSSSSEEEEEECCGGGHHHHHHHHHTS
T ss_pred             HHHHHHH---HHCCCCC-CCCCCCCCCEEEEEECHHHHHHHHHHHHHC
T ss_conf             9999999---8538874-201589981799985735499999999981


No 17 
>d1sr2a_ a.24.10.4 (A:) Sensor-like histidine kinase YojN, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=55.25  E-value=5  Score=17.37  Aligned_cols=59  Identities=14%  Similarity=0.229  Sum_probs=40.0

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHH
Q ss_conf             856899997305509999999980999999999999999899987038995686578899999999997
Q gi|254781016|r  221 SPFFTQWTQQISTDLAHIKQAIIDQDFIKLGEVAEKNALKMHATMIAASPPLLYWQKETIQGMERVWDA  289 (355)
Q Consensus       221 Sp~y~~r~~~~~~~~~~~~~ai~~~Df~~l~~i~e~dal~mHa~~~~s~P~~~Y~~~~t~~ii~~v~~~  289 (355)
                      +.++.--++..+.++..+.+|+.++||+.+.+++-    +|+..+-.-.      -+.-.++...+...
T Consensus        34 ~~~~~lF~~~~p~~l~~L~~a~~~~D~~~l~~~aH----~LKGs~~~~G------a~~l~~~~~~lE~~   92 (116)
T d1sr2a_          34 SGYYALFVDTVPDDVKRLYTEAATSDFAALAQTAH----RLKGVFAMLN------LVPGKQLCETLEHL   92 (116)
T ss_dssp             HTTHHHHTTTHHHHHHHHHHHHHHTCHHHHHHHHH----HHHHHHHHHT------CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH----HHHHHHHHCC------CHHHHHHHHHHHHH
T ss_conf             89999999861999999999998749999999999----9988798719------63999989999999


No 18 
>d1wuua2 d.58.26.7 (A:217-392) Galactokinase {Human (Homo sapiens) [TaxId: 9606]}
Probab=48.31  E-value=7.2  Score=16.28  Aligned_cols=83  Identities=13%  Similarity=0.051  Sum_probs=52.2

Q ss_pred             HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHH-CCCE-EEEEECCCC--EEE
Q ss_conf             550999999998099999999999999989998703899568657889999999999742-8961-999977798--179
Q gi|254781016|r  232 STDLAHIKQAIIDQDFIKLGEVAEKNALKMHATMIAASPPLLYWQKETIQGMERVWDARQ-QSIP-IYFTLDAGP--NLK  307 (355)
Q Consensus       232 ~~~~~~~~~ai~~~Df~~l~~i~e~dal~mHa~~~~s~P~~~Y~~~~t~~ii~~v~~~R~-~g~~-v~fT~DAGP--Nv~  307 (355)
                      ..++....+|++++|++.||+++-.+-..|-..+--|.       |+.-.++   ...++ .|.- +=.| .||=  -+.
T Consensus        69 ~~Rv~~~~~al~~~d~~~lg~Lm~~sh~sL~~~~~vS~-------peld~lv---~~a~~~~G~lGaRlt-GaGfGGcvi  137 (176)
T d1wuua2          69 IRRTAQAAAALRRGDYRAFGRLMVESHRSLRDDYEVSC-------PELDQLV---EAALAVPGVYGSRMT-GGGFGGCTV  137 (176)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTSCCCC-------HHHHHHH---HHHHTSTTEEEEEEC-SSCSEEEEE
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCC-------HHHHHHH---HHHHHCCCCCEEEEC-CCCCCCEEE
T ss_conf             88667787776226899999999999999999885468-------6699999---999964999552540-489870799


Q ss_pred             EEECHHHHHHHHHHHHHC
Q ss_conf             995589899999997632
Q gi|254781016|r  308 LLFTHKIEETIKQFFPEI  325 (355)
Q Consensus       308 il~~~~~~~~i~~~l~~i  325 (355)
                      .|++++..+++.+.+.+.
T Consensus       138 aLv~~~~~~~~~~~~~~~  155 (176)
T d1wuua2         138 TLLEASAAPHAMRHIQEH  155 (176)
T ss_dssp             EEEEGGGHHHHHHHHHHH
T ss_pred             EEECHHHHHHHHHHHHHH
T ss_conf             995535699999999998


No 19 
>d1kvka2 d.58.26.3 (A:226-394) Mevalonate kinase {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=39.57  E-value=9.7  Score=15.37  Aligned_cols=119  Identities=15%  Similarity=0.151  Sum_probs=59.6

Q ss_pred             CCCCEEEEEEECCCCCCCCCCHHHHHHH----HHCH-HHHHHHHHHHHHHHHHHHHH-------HHCCHHHHHHHHHHHH
Q ss_conf             8642158999728766752105679887----6185-68999973055099999999-------8099999999999999
Q gi|254781016|r  191 WPDLRIGLLKIIDREKKIGSREAMEITR----HHSP-FFTQWTQQISTDLAHIKQAI-------IDQDFIKLGEVAEKNA  258 (355)
Q Consensus       191 ~~dl~~~i~iv~~~~K~vsSt~gm~~~v----~tSp-~y~~r~~~~~~~~~~~~~ai-------~~~Df~~l~~i~e~da  258 (355)
                      .|+++  +++++++.+..  |..+...|    +..| .+..-++...+-..++.+++       ..+|+..|++++..+-
T Consensus         2 lP~l~--lll~~Tgv~r~--T~~~v~~V~~~~~~~~~~~~~~l~~~~~l~~~a~~~l~~~~~~~~~~d~~~lg~lm~~~~   77 (169)
T d1kvka2           2 LPALQ--ILLTNTKVPRS--TKALVAGVRSRLIKFPEIMAPLLTSIDAISLECERVLGEMAAAPVPEQYLVLEELMDMNQ   77 (169)
T ss_dssp             CCCEE--EEEEECCCCCC--HHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHH
T ss_pred             CCCEE--EEEECCCCCCH--HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf             99837--99976998405--999999999999859688999998875999999997642654301433999999999958


Q ss_pred             HHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHHCCCEEEEEECC--CCEEEEEECHHH----HHHHHHHHHHC
Q ss_conf             98999870389956865788999999999974289619999777--981799955898----99999997632
Q gi|254781016|r  259 LKMHATMIAASPPLLYWQKETIQGMERVWDARQQSIPIYFTLDA--GPNLKLLFTHKI----EETIKQFFPEI  325 (355)
Q Consensus       259 l~mHa~~~~s~P~~~Y~~~~t~~ii~~v~~~R~~g~~v~fT~DA--GPNv~il~~~~~----~~~i~~~l~~i  325 (355)
                      -.+..+- -|       +|..-.+++..   ++.|..+-.| .|  |=-+..|++++.    .+.+.+.+...
T Consensus        78 ~lL~~lg-VS-------~~~ld~lv~~a---~~~g~gaKlt-GAGgGGc~ial~~~~~~~~~~~~i~~~l~~~  138 (169)
T d1kvka2          78 HHLNALG-VG-------HASLDQLCQVT---AAHGLHSKLT-GAGGGGCGITLLKPGLERAKVEAAKQALTGC  138 (169)
T ss_dssp             HHHHHHT-CC-------CHHHHHHHHHH---HHTTCEEEEC-SSCSSSEEEEEECTTCCHHHHHHHHHHHHHT
T ss_pred             HHHHHCC-CC-------HHHHHHHHHHH---HHCCCCCCCC-CCCCCCEEEEEECCCCHHHHHHHHHHHHHHC
T ss_conf             8887417-67-------19999999999---9829551014-7898876999856642399999999999975


No 20 
>d2iw0a1 c.6.2.3 (A:29-248) Chitin deacetylase {Bean anthracnose fungus (Colletotrichum lindemuthianum) [TaxId: 290576]}
Probab=35.93  E-value=10  Score=15.16  Aligned_cols=35  Identities=11%  Similarity=0.125  Sum_probs=17.5

Q ss_pred             CCCEEEEECCCCEEEEEEECC-----CCCCEEEECCEECC
Q ss_conf             984346812781079999717-----88857998787256
Q gi|254781016|r   50 NNSLSLSLGHLGTITHITVID-----SDADCIILNGQKIS   84 (355)
Q Consensus        50 n~SiS~TL~~~~T~T~v~~~~-----~~~d~~~lnG~~~~   84 (355)
                      ...++||-|+-....+-...+     .-.-+|++.|+...
T Consensus        13 ~~~VaLTFDDGp~~~t~~il~~L~~~~i~aTFFv~g~~i~   52 (220)
T d2iw0a1          13 PGLVALTYDDGPFTFTPQLLDILKQNDVRATFFVNGNNWA   52 (220)
T ss_dssp             SSEEEEEEESCSCTTHHHHHHHHHHHTCCCEEEECSBSSS
T ss_pred             CCEEEEEEECCCCHHHHHHHHHHHHCCCCEEEEEECCCCC
T ss_conf             9989998707984649999999998699789999655456


No 21 
>d1ny1a_ c.6.2.3 (A:) Probable polysaccharide deacetylase PdaA {Bacillus subtilis [TaxId: 1423]}
Probab=33.15  E-value=10  Score=15.16  Aligned_cols=34  Identities=9%  Similarity=0.172  Sum_probs=16.5

Q ss_pred             CCEEEEECCCCEE-EE--E-EEC-C-CCCCEEEECCEECC
Q ss_conf             8434681278107-99--9-971-7-88857998787256
Q gi|254781016|r   51 NSLSLSLGHLGTI-TH--I-TVI-D-SDADCIILNGQKIS   84 (355)
Q Consensus        51 ~SiS~TL~~~~T~-T~--v-~~~-~-~~~d~~~lnG~~~~   84 (355)
                      ..+.||-|+.... .+  + ... . .-+-+|++.|....
T Consensus        43 K~V~LTFDDGp~~~~~~~il~~L~~~~i~aTfFv~g~~~~   82 (235)
T d1ny1a_          43 KTIYLTFDNGYENGYTPKVLDVLKKHRVTGTFFVTGHFVK   82 (235)
T ss_dssp             SEEEEEEEESSCCSCHHHHHHHHHHTTCCCEEEECHHHHH
T ss_pred             CEEEEEEECCCCCCCHHHHHHHHHHCCCCEEEECCHHHHH
T ss_conf             8699999578996668999999997699879713288787


No 22 
>d2a0ba_ a.24.10.1 (A:) Aerobic respiration control sensor protein, ArcB {Escherichia coli [TaxId: 562]}
Probab=24.47  E-value=17  Score=13.68  Aligned_cols=34  Identities=9%  Similarity=0.080  Sum_probs=28.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Q ss_conf             5689999730550999999998099999999999
Q gi|254781016|r  222 PFFTQWTQQISTDLAHIKQAIIDQDFIKLGEVAE  255 (355)
Q Consensus       222 p~y~~r~~~~~~~~~~~~~ai~~~Df~~l~~i~e  255 (355)
                      .+.....+..+.++..+..++.++|++.+.+++-
T Consensus        26 ~~l~~F~~~~~~~l~~l~~a~~~~d~~~~~~~aH   59 (118)
T d2a0ba_          26 DGLAVFEKMMPGYVSVLESNLTAQDKKGIVEEGH   59 (118)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf             9999999986999999999988779999999999


No 23 
>d2ts1a_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Bacillus stearothermophilus, nca 1503 [TaxId: 1422]}
Probab=21.77  E-value=19  Score=13.32  Aligned_cols=57  Identities=18%  Similarity=0.252  Sum_probs=39.1

Q ss_pred             EEECCCCCCCCCCHHHHHHH---HHCH--HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf             99728766752105679887---6185--6899997305509999999980999999999999
Q gi|254781016|r  199 LKIIDREKKIGSREAMEITR---HHSP--FFTQWTQQISTDLAHIKQAIIDQDFIKLGEVAEK  256 (355)
Q Consensus       199 ~iv~~~~K~vsSt~gm~~~v---~tSp--~y~~r~~~~~~~~~~~~~ai~~~Df~~l~~i~e~  256 (355)
                      +.-.++ +|.+++.|-....   .|||  +|+-|.....+.+.+....+..-+.+++.++.+.
T Consensus       223 L~~~~G-~K~~ks~~n~i~l~~~~tsp~~~yq~~~n~~D~~v~~yl~~~T~~~~eeI~~i~~~  284 (319)
T d2ts1a_         223 VTKADG-TKFGKTESGTIWLDKEKTSPYEFYQFWINTDDRDVIRYLKYFTFLSKEEIEALEQE  284 (319)
T ss_dssp             CCCTTS-CCTTCCSSCCCBSSTTTSCHHHHHHHHHTCCHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred             CCCCCC-CEEEECCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf             025666-43211379986023255887899977168988999999999716999999999999


No 24 
>d1rpxa_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Potato (Solanum tuberosum) [TaxId: 4113]}
Probab=20.95  E-value=11  Score=15.12  Aligned_cols=42  Identities=7%  Similarity=0.244  Sum_probs=26.1

Q ss_pred             HHHCCCCCEEE--ECHHHHHHHHHHHHHHHC-CCEEEEEECCCCE
Q ss_conf             87038995686--578899999999997428-9619999777981
Q gi|254781016|r  264 TMIAASPPLLY--WQKETIQGMERVWDARQQ-SIPIYFTLDAGPN  305 (355)
Q Consensus       264 ~~~~s~P~~~Y--~~~~t~~ii~~v~~~R~~-g~~v~fT~DAGPN  305 (355)
                      ++|+..|+|.-  +.+.+++-|+.+++++.+ +..+..-.|.|=|
T Consensus       145 llM~V~PGf~GQ~f~~~~~~kI~~~~~~~~~~~~~~~I~vDGGIn  189 (230)
T d1rpxa_         145 LIMSVNPGFGGQSFIESQVKKISDLRKICAERGLNPWIEVDGGVG  189 (230)
T ss_dssp             EEESSCTTCSSCCCCTTHHHHHHHHHHHHHHHTCCCEEEEESSCC
T ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCC
T ss_conf             998736886420013566899999877777537734899987768


Done!