Query gi|254781016|ref|YP_003065429.1| diphosphomevalonate decarboxylase/isopentenyl-diphosphate delta-isomerase [Candidatus Liberibacter asiaticus str. psy62] Match_columns 355 No_of_seqs 128 out of 512 Neff 5.8 Searched_HMMs 13730 Date Wed Jun 1 11:10:06 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254781016.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1fi4a1 d.14.1.5 (A:3-190) Mev 100.0 0 0 429.4 14.1 171 22-192 2-188 (188) 2 d1fi4a2 d.58.26.2 (A:191-393) 100.0 4.7E-41 2.8E-45 304.2 16.5 134 193-326 1-137 (203) 3 d1h72c1 d.14.1.5 (C:5-167) Hom 99.3 3.9E-12 2.8E-16 102.1 10.4 137 23-171 2-149 (163) 4 d1kkha1 d.14.1.5 (A:1-180) Mev 98.8 8.4E-08 6.1E-12 71.7 12.3 145 21-174 3-175 (180) 5 d1k47a1 d.14.1.5 (A:1-194) Pho 98.4 2.8E-06 2E-10 61.1 11.6 126 45-173 17-164 (194) 6 d1kvka1 d.14.1.5 (A:1-225) Mev 97.9 6.6E-05 4.8E-09 51.5 10.1 69 107-175 128-220 (225) 7 d1piea1 d.14.1.5 (A:9-213) Gal 97.9 0.0001 7.4E-09 50.2 10.3 153 9-169 7-185 (205) 8 d1wuua1 d.14.1.5 (A:2-216) Gal 97.8 0.00019 1.4E-08 48.3 10.9 147 8-167 15-193 (215) 9 d1oj4a1 d.14.1.5 (A:1-163) 4-( 97.7 0.00028 2.1E-08 47.1 11.2 71 106-177 88-158 (163) 10 d1s4ea1 d.14.1.5 (A:5-180) Gal 97.6 3.2E-05 2.3E-09 53.7 4.6 63 107-169 85-157 (176) 11 d1ueka1 d.14.1.5 (A:1-148) 4-( 97.3 0.00059 4.3E-08 44.9 7.7 135 26-177 5-142 (148) 12 d1h72c2 d.58.26.1 (C:168-300) 96.5 0.0061 4.5E-07 37.7 7.6 115 193-325 2-117 (133) 13 d1k47a2 d.58.26.4 (A:195-329) 95.3 0.1 7.4E-06 29.2 13.8 123 192-327 2-127 (135) 14 d1s4ea2 d.58.26.7 (A:181-351) 90.3 0.57 4.1E-05 24.0 11.1 84 232-325 65-150 (171) 15 d1piea2 d.58.26.7 (A:214-396) 85.8 1.1 7.8E-05 22.1 9.8 83 232-324 74-159 (183) 16 d1kkha2 d.58.26.3 (A:181-317) 73.5 2.6 0.00019 19.3 12.0 110 200-325 15-126 (137) 17 d1sr2a_ a.24.10.4 (A:) Sensor- 55.2 5 0.00037 17.4 3.2 59 221-289 34-92 (116) 18 d1wuua2 d.58.26.7 (A:217-392) 48.3 7.2 0.00053 16.3 9.8 83 232-325 69-155 (176) 19 d1kvka2 d.58.26.3 (A:226-394) 39.6 9.7 0.00071 15.4 12.5 119 191-325 2-138 (169) 20 d2iw0a1 c.6.2.3 (A:29-248) Chi 35.9 10 0.00076 15.2 2.4 35 50-84 13-52 (220) 21 d1ny1a_ c.6.2.3 (A:) Probable 33.2 10 0.00076 15.2 2.0 34 51-84 43-82 (235) 22 d2a0ba_ a.24.10.1 (A:) Aerobic 24.5 17 0.0012 13.7 4.7 34 222-255 26-59 (118) 23 d2ts1a_ c.26.1.1 (A:) Tyrosyl- 21.8 19 0.0014 13.3 2.0 57 199-256 223-284 (319) 24 d1rpxa_ c.1.2.2 (A:) D-ribulos 20.9 11 0.00077 15.1 0.2 42 264-305 145-189 (230) No 1 >d1fi4a1 d.14.1.5 (A:3-190) Mevalonate 5-diphosphate decarboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Probab=100.00 E-value=0 Score=429.35 Aligned_cols=171 Identities=43% Similarity=0.701 Sum_probs=151.4 Q ss_pred CCEEEECCCCEEEEECCCCCCHHHCCCCCCCEEEEECC--CCEEEEEEECCC-CCCEEEECCEECCCCCHHHHHHHHHHH Q ss_conf 63789748842488116776701175789843468127--810799997178-885799878725665206899999974 Q gi|254781016|r 22 EKSSAFLPSNIALCKYWGKRDSKLNLPLNNSLSLSLGH--LGTITHITVIDS-DADCIILNGQKISSQSSFFKKTTQFCD 98 (355) Q Consensus 22 ~~~ta~ap~NIALIKYWGK~d~~l~lP~n~SiS~TL~~--~~T~T~v~~~~~-~~d~~~lnG~~~~~~~~~~~ri~~~l~ 98 (355) .++||+||+||||||||||+|+++|||.||||||||+. ++|+|++++.+. ++|+++|||++.+...++.+++...++ T Consensus 2 ~~~t~~apsNIALiKYWGK~d~~~~lP~n~SiS~TL~~~~~~T~t~v~~~~~~~~d~~~lnG~~~~~~~~~~~~~~~~l~ 81 (188) T d1fi4a1 2 YTASVTAPVNIATLKYWGKRDTKLNLPTNSSISVTLSQDDLRTLTSAATAPEFERDTLWLNGEPHSIDNERTQNCLRDLR 81 (188) T ss_dssp EEEEEEECCEEEEECCCCEEETTTTEESSCEEEEEBCTTTSCEEEEEEECTTCCSCBCTTTCCBSSSSSSSHHHHHHHHH T ss_pred EEEEEECCCCEEEEEECCCCCCCCCCCCCCEEEEEECCCCCEEEEEEEECCCCCCCCEEECCEECCCCHHHHHHHHHHHH T ss_conf 57899753748788752645754577899827899358986788999867877654135788203640278899999999 Q ss_pred HHHHH-----------CCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHCCC Q ss_conf 21676-----------1943999985023321101232247999999999981889998899988652135303431056 Q gi|254781016|r 99 LFRQF-----------SKVYFLIETSNNIPTKAGLASSASGFAALTLALFRIYSIPEKSESLSRVARLGSGSACRSFYRG 167 (355) Q Consensus 99 ~~r~~-----------~~~~~~I~S~N~fPtaaGLASSASgfAALa~Al~~~~~~~~~~~~lS~lARlGSGSA~RSi~GG 167 (355) .++.. .+++++|+|+|||||+|||||||||||||+.|+.++++++++.+++|+|||+||||||||+||| T Consensus 82 ~~~~~~~~~~~~~p~~~~~~~~I~S~N~FP~aaGLASSAsg~aAl~~al~~~~~~~~~~~~~S~lARlGSGSAcRSi~Gg 161 (188) T d1fi4a1 82 QLRKEMESKDASLPTLSQWKLHIVSENNFPTAAGLASSAAGFAALVSAIAKLYQLPQSTSEISRIARKGSGSACRSLFGG 161 (188) T ss_dssp HHHHHHHTTCTTSCCGGGSCEEEEEEECCCTTSCCCHHHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHGGGGGGGSSS T ss_pred HHHHHHHCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHCCC T ss_conf 99988730243576412442899962788221108887988999999999997177888999999876454403232088 Q ss_pred CHHCCCCCCCCCCCEEEEEC--CCCCC Q ss_conf 20025789876544131015--66686 Q gi|254781016|r 168 FCEWICGTDQNGMDSFAVPF--NNQWP 192 (355) Q Consensus 168 ~v~W~~g~~~~~sds~a~~~--~~~~~ 192 (355) ||+|+.|..+|++|+||+++ ++||| T Consensus 162 ~v~W~~g~~~dg~d~~a~~~~~~~hWp 188 (188) T d1fi4a1 162 YVAWEMGKAEDGHDSMAVQIADSSDWP 188 (188) T ss_dssp EEEEECCSCTTCTTCEEEEEECGGGST T ss_pred EEEECCCCCCCCCCEEEEECCCCCCCC T ss_conf 668026899998860378888745798 No 2 >d1fi4a2 d.58.26.2 (A:191-393) Mevalonate 5-diphosphate decarboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Probab=100.00 E-value=4.7e-41 Score=304.18 Aligned_cols=134 Identities=21% Similarity=0.406 Sum_probs=128.8 Q ss_pred CCEEEEEEECCCCCCCCCCHHHHHHHHHCHHHHHHHHH-HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCC Q ss_conf 42158999728766752105679887618568999973-05509999999980999999999999999899987038995 Q gi|254781016|r 193 DLRIGLLKIIDREKKIGSREAMEITRHHSPFFTQWTQQ-ISTDLAHIKQAIIDQDFIKLGEVAEKNALKMHATMIAASPP 271 (355) Q Consensus 193 dl~~~i~iv~~~~K~vsSt~gm~~~v~tSp~y~~r~~~-~~~~~~~~~~ai~~~Df~~l~~i~e~dal~mHa~~~~s~P~ 271 (355) +++++|+||++++|+||||+||+++++|||||+.|+++ ++.|+.+|++||+++||++||+++|+|+|+|||+||+++|| T Consensus 1 elr~~IlVvs~~~K~vsSt~GM~~tv~TSpl~~~r~~~~~p~r~~~m~~AI~~rDF~~f~eite~ds~~mHA~~l~s~Pp 80 (203) T d1fi4a2 1 QMKACVLVVSDIKKDVSSTQGMQLTVATSELFKERIEHVVPKRFEVMRKAIVEKDFATFAKETMMDSNSFHATCLDSFPP 80 (203) T ss_dssp TEEEEEEEECCCSCCCCHHHHHHHHHHHCSHHHHHHHTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSC T ss_pred CCEEEEEEECCCCCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCC T ss_conf 93699999659987788679998787719558999998758899999999995999999999998499999998547998 Q ss_pred EEEECHHHHHHHHHHHHHHH--CCCEEEEEECCCCEEEEEECHHHHHHHHHHHHHCC Q ss_conf 68657889999999999742--89619999777981799955898999999976321 Q gi|254781016|r 272 LLYWQKETIQGMERVWDARQ--QSIPIYFTLDAGPNLKLLFTHKIEETIKQFFPEIT 326 (355) Q Consensus 272 ~~Y~~~~t~~ii~~v~~~R~--~g~~v~fT~DAGPNv~il~~~~~~~~i~~~l~~i~ 326 (355) |+||+|.|+++|++|+++|+ ++++|||||||||||||||++++++.|.++|..+. T Consensus 81 i~Ylnd~S~~ii~~V~~~r~~~g~~~v~yT~DAGPNv~ll~~~~~~~~v~~~l~~~f 137 (203) T d1fi4a2 81 IFYMNDTSKRIISWCHTINQFYGETIVAYTFDAGPNAVLYYLAENESKLFAFIYKLF 137 (203) T ss_dssp CCCCCHHHHHHHHHHHHHHHHHTSCCEEEEECSSSCEEEEEEGGGHHHHHHHHHHHH T ss_pred EEEECCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCEEEEECCCCHHHHHHHHHHHC T ss_conf 587895189999999999986599658999779997799976503999999999977 No 3 >d1h72c1 d.14.1.5 (C:5-167) Homoserine kinase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Probab=99.35 E-value=3.9e-12 Score=102.07 Aligned_cols=137 Identities=16% Similarity=0.135 Sum_probs=99.2 Q ss_pred CEEEECCCCEEEEECCCCCCHHHCCCCCCCEEEEECCCCEEEEEEECCCCCCEEEECCEECCCCCHHHHHHHHHHHHHHH Q ss_conf 37897488424881167767011757898434681278107999971788857998787256652068999999742167 Q gi|254781016|r 23 KSSAFLPSNIALCKYWGKRDSKLNLPLNNSLSLSLGHLGTITHITVIDSDADCIILNGQKISSQSSFFKKTTQFCDLFRQ 102 (355) Q Consensus 23 ~~ta~ap~NIALIKYWGK~d~~l~lP~n~SiS~TL~~~~T~T~v~~~~~~~d~~~lnG~~~~~~~~~~~ri~~~l~~~r~ 102 (355) |.+.++|.-+|=+ =|=-++|.+.|+.++.+.+++..+..+..+..+++..+..+.. .-+.+..+.+.+ T Consensus 2 ~i~v~~Pas~aNl-----------g~GFD~lg~Al~~~~d~v~v~~~~~~~i~i~~~~~~i~~~~~~-n~~~~~~~~~~~ 69 (163) T d1h72c1 2 KVRVKAPCTSANL-----------GVGFDVFGLCLKEPYDVIEVEAIDDKEIIIEVDDKNIPTDPDK-NVAGIVAKKMID 69 (163) T ss_dssp EEEEEEEEEEECT-----------GGGTTTEEEEEEEEEEEEEEEEESSSSEEEEESCTTSCCCTTT-SHHHHHHHHHHH T ss_pred EEEEEEECCHHHC-----------CCCHHHHHHHHCCCCCEEEEEECCCCEEEEEECCCCCCCCHHH-HHHHHHHHHHHH T ss_conf 7999983307755-----------5467676512247865899999789828997448525775442-247899888998 Q ss_pred HC--CCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHC------CC--C-CHHHHCCCCHHC Q ss_conf 61--9439999850233211012322479999999999818899988999886521------35--3-034310562002 Q gi|254781016|r 103 FS--KVYFLIETSNNIPTKAGLASSASGFAALTLALFRIYSIPEKSESLSRVARLG------SG--S-ACRSFYRGFCEW 171 (355) Q Consensus 103 ~~--~~~~~I~S~N~fPtaaGLASSASgfAALa~Al~~~~~~~~~~~~lS~lARlG------SG--S-A~RSi~GG~v~W 171 (355) .. ...++|...+++|.++||+||||..+|+..|++++++++++.+++..+|+++ +| + .+-++|||++.- T Consensus 70 ~~~~~~~~~i~i~~~IP~gaGLGsSSA~a~a~l~aln~l~~~~ls~~~l~~~A~~~e~~~~g~~~gddv~~~~~GG~~~~ 149 (163) T d1h72c1 70 DFNIGKGVKITIKKGVKAGSGLGSSAASSAGTAYAINELFKLNLDKLKLVDYASYGELASSGAKHADNVAPAIFGGFTMV 149 (163) T ss_dssp HTTCCCEEEEEEECSSCTTSSSCHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHSSCCCTTHHHHHHCSEEEE T ss_pred HCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCEEEE T ss_conf 62998778999960641356657507889999999999837998979999999998776537877147678760997999 No 4 >d1kkha1 d.14.1.5 (A:1-180) Mevalonate kinase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Probab=98.78 E-value=8.4e-08 Score=71.74 Aligned_cols=145 Identities=25% Similarity=0.291 Sum_probs=90.4 Q ss_pred CCCEEEECCCCEEEEECCCCCCHHHCCCCCCCEEEEECCCCEEEEEEECCCCCCEEEEC--CE-----------ECCCCC Q ss_conf 76378974884248811677670117578984346812781079999717888579987--87-----------256652 Q gi|254781016|r 21 NEKSSAFLPSNIALCKYWGKRDSKLNLPLNNSLSLSLGHLGTITHITVIDSDADCIILN--GQ-----------KISSQS 87 (355) Q Consensus 21 ~~~~ta~ap~NIALIKYWGK~d~~l~lP~n~SiS~TL~~~~T~T~v~~~~~~~d~~~ln--G~-----------~~~~~~ 87 (355) ..+..++||-.|-|+ |-+-. +==.+.|++++| .+++.+++ +..++.+.++ +. ...... T Consensus 3 ~~~~~~~aPgkv~L~---GEh~~---~~G~~~l~~aI~-~~~~v~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 73 (180) T d1kkha1 3 GSHMIIETPSKVILF---GEHAV---VYGYRAISMAID-LTSTIEIK--ETQEDEIILNLNDLNKSLGLNLNEIKNINPN 73 (180) T ss_dssp TCCEEEEEEEEEEEE---CTTGG---GGTCCEEEEEEE-EEEEEEEE--ECCSSEEEEEETTTTEEEEEETTTGGGCCGG T ss_pred CCEEEEECCEEEEEE---CCCEE---ECCCEEEEEEEE-CEEEEEEE--ECCCCCCCEEEECCCCEEEECCHHCCCCCCC T ss_conf 976999838799997---46868---729879999970-87999999--8898775214403464145420011235832 Q ss_pred --HHHHHHH----HHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH------ Q ss_conf --0689999----9974216761943999985023321101232247999999999981889998899988652------ Q gi|254781016|r 88 --SFFKKTT----QFCDLFRQFSKVYFLIETSNNIPTKAGLASSASGFAALTLALFRIYSIPEKSESLSRVARL------ 155 (355) Q Consensus 88 --~~~~ri~----~~l~~~r~~~~~~~~I~S~N~fPtaaGLASSASgfAALa~Al~~~~~~~~~~~~lS~lARl------ 155 (355) ...+.+. .++++........+.|....++|.++||+||||..+|++.|+..+++++++.+++..+|.. T Consensus 74 ~~~~~~~~~~~i~~~~~~~~~~~~~g~~i~i~s~iP~g~GLGSSaa~~va~~~al~~~~~~~l~~~~l~~la~~~E~~~~ 153 (180) T d1kkha1 74 NFGDFKYCLCAIKNTLDYLNIEPKTGFKINISSKIPISCGLGSSASITIGTIKAVSGFYNKELKDDEIAKLGYMVEKEIQ 153 (180) T ss_dssp GSGGGHHHHHHHHHHHHHTTCCCCSCEEEEEEECSCSSSSSCHHHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHS T ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHC T ss_conf 00348999999999999858899987799994150100375654003999999999985767998999999999999868 Q ss_pred CCCC---CHHHHCCCCHHCCCC Q ss_conf 1353---034310562002578 Q gi|254781016|r 156 GSGS---ACRSFYRGFCEWICG 174 (355) Q Consensus 156 GSGS---A~RSi~GG~v~W~~g 174 (355) |.|| .+-++|||++.+..+ T Consensus 154 g~~sg~D~~~~~~Gg~i~~~~~ 175 (180) T d1kkha1 154 GKASITDTSTITYKGILEIKNN 175 (180) T ss_dssp SSCCSHHHHHHHHCSEEEESSS T ss_pred CCCCHHHHHHHHHCCEEEEECC T ss_conf 9987899999981997999579 No 5 >d1k47a1 d.14.1.5 (A:1-194) Phosphomevalonate kinase (PMK) {Streptococcus pneumoniae r6 [TaxId: 171101]} Probab=98.40 E-value=2.8e-06 Score=61.10 Aligned_cols=126 Identities=17% Similarity=0.147 Sum_probs=81.1 Q ss_pred HCC-CCCCCEEEEECCCCEEEEEEECCCCCCEEEECCEECC------CCCHHHHHHHHHHHHHHHHCC---CEEEEEEEC Q ss_conf 175-7898434681278107999971788857998787256------652068999999742167619---439999850 Q gi|254781016|r 45 LNL-PLNNSLSLSLGHLGTITHITVIDSDADCIILNGQKIS------SQSSFFKKTTQFCDLFRQFSK---VYFLIETSN 114 (355) Q Consensus 45 l~l-P~n~SiS~TL~~~~T~T~v~~~~~~~d~~~lnG~~~~------~~~~~~~ri~~~l~~~r~~~~---~~~~I~S~N 114 (355) -.+ |=.+.|++.+|. +++.+++ +.+..++........ ........+.+++..+-...+ ..+.|.-.. T Consensus 17 aVv~~G~~ala~ai~~-~~~v~v~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s 93 (194) T d1k47a1 17 AILEPGQLALIKDIPI-YMRAEIA--FSDSYRIYSDMFDFAVDLRPNPDYSLIQETIALMGDFLAVRGQNLRPFSLAIYG 93 (194) T ss_dssp GGGSTTCEEEEEEEEE-EEEEEEE--ECSSCEEEEEC---------CCCHHHHHHHHHHHHHHHHHTTCCCCCEEEEEES T ss_pred EEECCCCEEEEEEEEC-EEEEEEE--ECCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEC T ss_conf 8960898199999804-5999999--888862775203433112567411688999999999999708988871899974 Q ss_pred CCCCCC---HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH------CCCCC---HHHHCCCCHHCCC Q ss_conf 233211---01232247999999999981889998899988652------13530---3431056200257 Q gi|254781016|r 115 NIPTKA---GLASSASGFAALTLALFRIYSIPEKSESLSRVARL------GSGSA---CRSFYRGFCEWIC 173 (355) Q Consensus 115 ~fPtaa---GLASSASgfAALa~Al~~~~~~~~~~~~lS~lARl------GSGSA---~RSi~GG~v~W~~ 173 (355) +.|.++ ||+|||+...|++.|+.++++++++.+++..+|.. |.||+ +-|+|||++.... T Consensus 94 ~ip~~~~~~GLGSSAA~~va~~~al~~~~~~~ls~~~i~~lA~~~e~~~~g~~SG~D~a~s~~GG~i~y~~ 164 (194) T d1k47a1 94 KMEREGKKFGLGSSGSVVVLVVKALLALYNLSVDQNLLFKLTSAVLLKRGDNGSMGDLACIAAEDLVLYQS 164 (194) T ss_dssp HHHHSTTSSCSCHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTTCCSCCHHHHHHHHTSCEEEEC T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEE T ss_conf 68666677764422789999999999870778999999999999999863588853345887498499982 No 6 >d1kvka1 d.14.1.5 (A:1-225) Mevalonate kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Probab=97.90 E-value=6.6e-05 Score=51.50 Aligned_cols=69 Identities=25% Similarity=0.228 Sum_probs=52.9 Q ss_pred EEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC---------------HHHHHHHHHH--------CCC-CCHH Q ss_conf 399998502332110123224799999999998188999---------------8899988652--------135-3034 Q gi|254781016|r 107 YFLIETSNNIPTKAGLASSASGFAALTLALFRIYSIPEK---------------SESLSRVARL--------GSG-SACR 162 (355) Q Consensus 107 ~~~I~S~N~fPtaaGLASSASgfAALa~Al~~~~~~~~~---------------~~~lS~lARl--------GSG-SA~R 162 (355) .+.|...-++|..+||+||||-..|++.|+..+++...+ .+++.+||.. +|| ..+= T Consensus 128 g~~i~i~s~lP~g~GLGSSAAl~va~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lA~~~E~~~~g~~SG~D~a~ 207 (225) T d1kvka1 128 SLDIMVWSELPPGAGLGSSAAYSVCVAAALLTACEEVTNPLKDRGSIGSWPEEDLKSINKWAYEGERVIHGNPSGVDNSV 207 (225) T ss_dssp CEEEEEEESSCTTSSSCHHHHHHHHHHHHHHHHTTSSCCGGGGCCSEECCCHHHHHHHHHHHHHHHHHHHSSCCSHHHHH T ss_pred CEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHH T ss_conf 86999967888874535215889999999999737666742110000344455599999999999998679975898999 Q ss_pred HHCCCCHHCCCCC Q ss_conf 3105620025789 Q gi|254781016|r 163 SFYRGFCEWICGT 175 (355) Q Consensus 163 Si~GG~v~W~~g~ 175 (355) |+|||++...+|. T Consensus 208 ~~~Gg~i~f~~g~ 220 (225) T d1kvka1 208 STWGGALRYQQGK 220 (225) T ss_dssp HHHCSEEEESSSC T ss_pred HHCCCEEEEECCC T ss_conf 9669669995899 No 7 >d1piea1 d.14.1.5 (A:9-213) Galactokinase {Lactococcus lactis [TaxId: 1358]} Probab=97.85 E-value=0.0001 Score=50.19 Aligned_cols=153 Identities=14% Similarity=0.130 Sum_probs=85.4 Q ss_pred HHHHHHCCCCCCCCCEEEECCCCEEEEECCCCCCHHHCCCCCCCEEEEECCCCEEEEEEECCCCCCEE-----------E Q ss_conf 88874034678776378974884248811677670117578984346812781079999717888579-----------9 Q gi|254781016|r 9 LHRYIGECNPKINEKSSAFLPSNIALCKYWGKRDSKLNLPLNNSLSLSLGHLGTITHITVIDSDADCI-----------I 77 (355) Q Consensus 9 ~~~~~~~~~~~~~~~~ta~ap~NIALIKYWGK~d~~l~lP~n~SiS~TL~~~~T~T~v~~~~~~~d~~-----------~ 77 (355) ...|...-+.. ..-..+.||--|=|+==|-=+..- +.|.++++ .++..++...++.+-++ . T Consensus 7 ~~~f~~~f~~~-~~~~~~~aPgRv~L~GeH~Dy~gg------~vl~~AI~-~~~~v~~~~~~d~~i~i~s~~~~~~~~~~ 78 (205) T d1piea1 7 TEKFAEVFGDT-KEVEYFFSPGRINLIGEHTDYNGG------YVFPASIT-IGTTGLARLREDKKVKLYSENFPKLGVIE 78 (205) T ss_dssp HHHHHHHHSCC-CSCEEEEEEEEEEEECCSCTTTTC------EEEEEEEE-EEEEEEEEECSSSEEEEEETTCGGGCCEE T ss_pred HHHHHHHHCCC-CCEEEEECCEEEEEECCCEEECCC------EEECCCCC-CEEEEEEECCCCCEEEEECCCCCCCCEEE T ss_conf 99999986998-652699745479985488057797------75023440-03999972378882455338888653131 Q ss_pred ECCEEC--CCCCHHHHHHHHHHHHHHHHC---CCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH Q ss_conf 878725--665206899999974216761---943999985023321101232247999999999981889998899988 Q gi|254781016|r 78 LNGQKI--SSQSSFFKKTTQFCDLFRQFS---KVYFLIETSNNIPTKAGLASSASGFAALTLALFRIYSIPEKSESLSRV 152 (355) Q Consensus 78 lnG~~~--~~~~~~~~ri~~~l~~~r~~~---~~~~~I~S~N~fPtaaGLASSASgfAALa~Al~~~~~~~~~~~~lS~l 152 (355) .+-... ........-+...+..+++.. ...+.|...-++|.++||+||||--.|++.|+..+++++++..++..+ T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~G~~i~i~s~iP~gsGLgSSAAl~va~~~al~~~~~~~~~~~~ia~~ 158 (205) T d1piea1 79 FDLDEVEKKDGELWSNYVKGMIVMLKGAGYEIDKGFELLIKGEIPTASGLSSSASLELLVGVVLDDLFNLNVPRLELVQL 158 (205) T ss_dssp EETTCTTSCCTTCTHHHHHHHHHHHHHTTCCCCSCEEEEEEECSCTTSSSCHHHHHHHHHHHHHHHHTTCCCCHHHHHHH T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHH T ss_conf 13311245666521578999999998717865567678871687552455731789999999999983899877999999 Q ss_pred HHHC----CCC------CHHHHCCCCH Q ss_conf 6521----353------0343105620 Q gi|254781016|r 153 ARLG----SGS------ACRSFYRGFC 169 (355) Q Consensus 153 ARlG----SGS------A~RSi~GG~v 169 (355) |+.. -|. -+-|++||+- T Consensus 159 a~~~E~~~~g~~~G~~Dq~as~~g~~~ 185 (205) T d1piea1 159 GQKTENDYIGVNSGILDQFAIGFGEVK 185 (205) T ss_dssp HHHHHHHTTCCCCCSHHHHHHHHCBTT T ss_pred HHHHHHHHCCCCCCHHHHHHHHHCCCC T ss_conf 999998454898737899999855788 No 8 >d1wuua1 d.14.1.5 (A:2-216) Galactokinase {Human (Homo sapiens) [TaxId: 9606]} Probab=97.79 E-value=0.00019 Score=48.29 Aligned_cols=147 Identities=16% Similarity=0.091 Sum_probs=85.7 Q ss_pred HHHHHHHCCCCCCCCCEEEECCCCEEEEE----CCCCCCHHHCCCCCCCEEEEECCCCEEEEEEECCCCCCEE------- Q ss_conf 88887403467877637897488424881----1677670117578984346812781079999717888579------- Q gi|254781016|r 8 ILHRYIGECNPKINEKSSAFLPSNIALCK----YWGKRDSKLNLPLNNSLSLSLGHLGTITHITVIDSDADCI------- 76 (355) Q Consensus 8 ~~~~~~~~~~~~~~~~~ta~ap~NIALIK----YWGK~d~~l~lP~n~SiS~TL~~~~T~T~v~~~~~~~d~~------- 76 (355) ....|...-+..+. ..++||--|-|+= |-|. +.|++.++ .++..++...++..-++ T Consensus 15 ~~~~F~~~fg~~p~--~i~~APGrv~L~GEH~dy~Gg----------~vl~~Ai~-~~~~v~~~~~~d~~i~v~s~~~~~ 81 (215) T d1wuua1 15 ARRAFREEFGAEPE--LAVSAPGRVNLIGEHTDYNQG----------LVLPMALE-LMTVLVGSPRKDGLVSLLTTSEGA 81 (215) T ss_dssp HHHHHHHHHSSCCS--EEEEEEEEEEEECTTCGGGTC----------EEEEEEEE-EEEEEEEEEETTCEEEEEECCSSS T ss_pred HHHHHHHHHCCCCC--EEEECCEEEEEECCCEEECCC----------EEEEEECC-CCEEEEEEECCCCEEEEEECCCCC T ss_conf 99999998699977--899855699996588265796----------67766326-738999985699879999866787 Q ss_pred --------EECCEECCCC---CHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC Q ss_conf --------9878725665---20689999997421676194399998502332110123224799999999998188999 Q gi|254781016|r 77 --------ILNGQKISSQ---SSFFKKTTQFCDLFRQFSKVYFLIETSNNIPTKAGLASSASGFAALTLALFRIYSIPEK 145 (355) Q Consensus 77 --------~lnG~~~~~~---~~~~~ri~~~l~~~r~~~~~~~~I~S~N~fPtaaGLASSASgfAALa~Al~~~~~~~~~ 145 (355) .++....... ......+...+..++......+.|...-++|.++||+||||-..|++.|+..++++.++ T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~i~S~iP~gaGLgSSAA~~val~~al~~~~~~~~~ 161 (215) T d1wuua1 82 DEPQRLQFPLPTAQRSLEPGTPRWANYVKGVIQYYPAAPLPGFSAVVVSSVPLGGGLSSSASLEVATYTFLQQLCPDSGT 161 (215) T ss_dssp CSCSEEEEECCCSSCCCCCCSSGGGHHHHHHHHHCSSSCCCEEEEEEEECSCTTSSSCHHHHHHHHHHHHHHHHSCCCSC T ss_pred CCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCC T ss_conf 75307851144101223446512666655667663257888758998257556764265068788889888887402344 Q ss_pred HHHHHHHHHHC----CCCC------HHHHCCC Q ss_conf 88999886521----3530------3431056 Q gi|254781016|r 146 SESLSRVARLG----SGSA------CRSFYRG 167 (355) Q Consensus 146 ~~~lS~lARlG----SGSA------~RSi~GG 167 (355) ..++..+|+.. =|.. +-|+||+ T Consensus 162 ~~~la~~a~~~E~~~~G~~~G~mDq~as~~g~ 193 (215) T d1wuua1 162 IAARAQVCQQAEHSFAGMPCGIMDQFISLMGQ 193 (215) T ss_dssp HHHHHHHHHHHHHHHTCCCCCSHHHHHHHHCC T ss_pred HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCC T ss_conf 78999999999997607988478999998177 No 9 >d1oj4a1 d.14.1.5 (A:1-163) 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase IspE {Escherichia coli [TaxId: 562]} Probab=97.74 E-value=0.00028 Score=47.06 Aligned_cols=71 Identities=14% Similarity=0.132 Sum_probs=57.0 Q ss_pred CEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHCCCCHHCCCCCCC Q ss_conf 439999850233211012322479999999999818899988999886521353034310562002578987 Q gi|254781016|r 106 VYFLIETSNNIPTKAGLASSASGFAALTLALFRIYSIPEKSESLSRVARLGSGSACRSFYRGFCEWICGTDQ 177 (355) Q Consensus 106 ~~~~I~S~N~fPtaaGLASSASgfAALa~Al~~~~~~~~~~~~lS~lARlGSGSA~RSi~GG~v~W~~g~~~ 177 (355) ..++|.-+-|+|.+|||+..+|-.||+.+++.+.++++++.+++..+|...-.--.-.++|+ ..|..|.++ T Consensus 88 ~~~~I~i~KnIP~gaGLGGGSsnAAa~L~~l~~~~~~~l~~~~l~~ia~~iGsDvpffl~~~-~a~~~G~Ge 158 (163) T d1oj4a1 88 SGANISIDKRLPMGGGLGGGSSNAATVLVALNHLWQCGLSMDELAEMGLTLGADVPVFVRGH-AAFAEGVGE 158 (163) T ss_dssp CEEEEEEECCSCSSTTSCHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHGGGCTTHHHHHHCB-CEEEETTTT T ss_pred CCEEEEEEEEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCCCC-CEEEEECCC T ss_conf 76499998525651035689715999999864222237999999999988099414320598-789997697 No 10 >d1s4ea1 d.14.1.5 (A:5-180) Galactokinase {Archaeon Pyrococcus furiosus [TaxId: 2261]} Probab=97.61 E-value=3.2e-05 Score=53.75 Aligned_cols=63 Identities=19% Similarity=0.170 Sum_probs=51.2 Q ss_pred EEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCC----C--C----CHHHHCCCCH Q ss_conf 399998502332110123224799999999998188999889998865213----5--3----0343105620 Q gi|254781016|r 107 YFLIETSNNIPTKAGLASSASGFAALTLALFRIYSIPEKSESLSRVARLGS----G--S----ACRSFYRGFC 169 (355) Q Consensus 107 ~~~I~S~N~fPtaaGLASSASgfAALa~Al~~~~~~~~~~~~lS~lARlGS----G--S----A~RSi~GG~v 169 (355) .+.|...-++|.++||+||||-..|++.|+.++++++++..++..+|+... | + -+-|+|||+. T Consensus 85 g~~i~i~s~iP~gsGLgSSAAl~va~~~al~~~~~~~~~~~~l~~~a~~~E~~~~g~~~G~~Dq~~~~~gg~~ 157 (176) T d1s4ea1 85 GLKGKITGDLPLGAGLSSSASFEVGILEVLNQLYNLNIDPLKKALLAKKAENEFVGVPCGILDQFAVVFGKKD 157 (176) T ss_dssp CBC-CEEESSCTTSSSCHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSCCCCCSHHHHHHHHCCTT T ss_pred CEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCC T ss_conf 8489983574567664560789999999999985236998999999999988762898654879999856888 No 11 >d1ueka1 d.14.1.5 (A:1-148) 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase IspE {Thermus thermophilus [TaxId: 274]} Probab=97.27 E-value=0.00059 Score=44.86 Aligned_cols=135 Identities=18% Similarity=0.148 Sum_probs=80.7 Q ss_pred EECCCCEEEEECCCCCCHHHCCCCCCCEEEEECCCCEEEEEEECCCCCCEEEECCEECCCCCHHHHHHHHHHHHHHHHCC Q ss_conf 97488424881167767011757898434681278107999971788857998787256652068999999742167619 Q gi|254781016|r 26 AFLPSNIALCKYWGKRDSKLNLPLNNSLSLSLGHLGTITHITVIDSDADCIILNGQKISSQSSFFKKTTQFCDLFRQFSK 105 (355) Q Consensus 26 a~ap~NIALIKYWGK~d~~l~lP~n~SiS~TL~~~~T~T~v~~~~~~~d~~~lnG~~~~~~~~~~~ri~~~l~~~r~~~~ 105 (355) |-|-.|+.| +=-|||+.- .---.|+=..+ +++-+-+++..+ +.+.+.|.. .++ .-|.+.++.+++..+ T Consensus 5 aPAKINL~L-~V~~kr~dG--yH~l~s~~~~i-~l~D~i~i~~~~---~~~~~~~p~--~~~---Nlv~ka~~~l~~~~~ 72 (148) T d1ueka1 5 APAKVNLGL-SVRFRREDG--YHELHTLFAPF-SLADRLVVEPVS---SGLHFQGPY--GRE---NLAYRAASLYLEAAG 72 (148) T ss_dssp EEEEEEEEE-EEEEECTTS--SEEEEEEEEEE-EEEEEEEEEEES---SCEEEESTT--GGG---SHHHHHHHHHHHHTT T ss_pred CCCEEEEEE-EECCCCCCC--CCEEEEEEEEE-ECCCCCEEECCC---CCCCCCCCC--CCC---CHHHHHHHHHHHHCC T ss_conf 130380457-637627898--55032799998-976512897146---641125654--432---133334556677518 Q ss_pred C--EEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH-CCCCCHHHHCCCCHHCCCCCCC Q ss_conf 4--3999985023321101232247999999999981889998899988652-1353034310562002578987 Q gi|254781016|r 106 V--YFLIETSNNIPTKAGLASSASGFAALTLALFRIYSIPEKSESLSRVARL-GSGSACRSFYRGFCEWICGTDQ 177 (355) Q Consensus 106 ~--~~~I~S~N~fPtaaGLASSASgfAALa~Al~~~~~~~~~~~~lS~lARl-GSGSA~RSi~GG~v~W~~g~~~ 177 (355) . .+.|.-+-|+|.+|||++++|-.||+..++++.++.+++.. .+|+. || -..-.++|+ ..|..|.++ T Consensus 73 ~~~~~~I~i~K~IP~~aGLGGGSsnAAa~l~~l~~~~~~~~~l~---~la~~iGs-DVPffl~~~-~~~~~G~Ge 142 (148) T d1ueka1 73 QPGGVRILLEKRIPEGAGLGGGSSDAAQVLLALQALYPAEVDLF---ALARTLGA-DVPFFLLGR-GAEARGVGE 142 (148) T ss_dssp CCCEEEEEEECCSCSSSSSCHHHHHHHHHHHHHHHHSCSCCCHH---HHHHHHCT-THHHHHHCS-EEEEETTTT T ss_pred CCCEEEEEEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHH---HHHCCCCC-CCHHHCCCC-CEEEEEECC T ss_conf 87518999982378863116783045469999988613556788---86245699-712423598-789998282 No 12 >d1h72c2 d.58.26.1 (C:168-300) Homoserine kinase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Probab=96.50 E-value=0.0061 Score=37.74 Aligned_cols=115 Identities=9% Similarity=0.049 Sum_probs=71.4 Q ss_pred CCEEEEEEECCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCE Q ss_conf 42158999728766752105679887618568999973055099999999809999999999999998999870389956 Q gi|254781016|r 193 DLRIGLLKIIDREKKIGSREAMEITRHHSPFFTQWTQQISTDLAHIKQAIIDQDFIKLGEVAEKNALKMHATMIAASPPL 272 (355) Q Consensus 193 dl~~~i~iv~~~~K~vsSt~gm~~~v~tSp~y~~r~~~~~~~~~~~~~ai~~~Df~~l~~i~e~dal~mHa~~~~s~P~~ 272 (355) ++++++++.+.+- ||.-+........-++..+. .-.+...+..++..+|++.+++.+++| .+|.-..... T Consensus 2 ~l~~vl~~P~~~v----sT~~aR~~LP~~~~~~dav~-n~~~~~~lv~al~~~d~~l~~~~~~~D--~l~Ep~r~~l--- 71 (133) T d1h72c2 2 KLDILIAIPNISI----NTKEAREILPKAVGLKDLVN-NVGKACGMVYALYNKDKSLFGRYMMSD--KVIEPVRGKL--- 71 (133) T ss_dssp CCCEEEECCSSCC----CHHHHHHTSCSCCCHHHHHH-HHHHHHHHHHHHHTTCHHHHHHHHTTC--CSSHHHHHTT--- T ss_pred EEEEEEEECCCCC----CHHHHHHHCHHHCCHHHHHH-HHHHHHHHHHHHHCCCHHHHHHHHHCC--CCCCCEECCC--- T ss_conf 6699999899988----58999986654397999987-042148899987406788999998468--4447100104--- Q ss_pred EEECHHHHHHHHHHHHHHHCCCEEEEEE-CCCCEEEEEECHHHHHHHHHHHHHC Q ss_conf 8657889999999999742896199997-7798179995589899999997632 Q gi|254781016|r 273 LYWQKETIQGMERVWDARQQSIPIYFTL-DAGPNLKLLFTHKIEETIKQFFPEI 325 (355) Q Consensus 273 ~Y~~~~t~~ii~~v~~~R~~g~~v~fT~-DAGPNv~il~~~~~~~~i~~~l~~i 325 (355) -|+..++.+. ++. | ..+++| .+||.|..||..++.+.+.+.+.+. T Consensus 72 ---~P~~~~ik~~---l~~-g-a~~~~lSGSGPTv~al~~~~~~~~~~~~l~~~ 117 (133) T d1h72c2 72 ---IPNYFKIKEE---VKD-K-VYGITISGSGPSIIAFPKEEFIDEVENILRDY 117 (133) T ss_dssp ---STTHHHHHHH---HTT-T-EEEEEECTTSSCEEEEECGGGHHHHHHHHHHH T ss_pred ---CCCHHHHHHH---HHC-C-CEEEEEECCCCCEEEEECHHHHHHHHHHHHHH T ss_conf ---9736999998---535-8-66999967997079983737899999999998 No 13 >d1k47a2 d.58.26.4 (A:195-329) Phosphomevalonate kinase (PMK) {Streptococcus pneumoniae r6 [TaxId: 171101]} Probab=95.32 E-value=0.1 Score=29.20 Aligned_cols=123 Identities=13% Similarity=0.051 Sum_probs=79.8 Q ss_pred CCCEEEEEEECCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCC Q ss_conf 64215899972876675210567988761856899997305509999999980999999999999999899987038995 Q gi|254781016|r 192 PDLRIGLLKIIDREKKIGSREAMEITRHHSPFFTQWTQQISTDLAHIKQAIIDQDFIKLGEVAEKNALKMHATMIAASPP 271 (355) Q Consensus 192 ~dl~~~i~iv~~~~K~vsSt~gm~~~v~tSp~y~~r~~~~~~~~~~~~~ai~~~Df~~l~~i~e~dal~mHa~~~~s~P~ 271 (355) |.+..-.++..++.. .||..|...++. -+++.-+.....-..++.+|++++|++.|++++..+-..+-.+- |. T Consensus 2 ~~l~~~lll~~TG~~--~sT~~lv~~v~~-~~~~~~l~~~~~~v~~~~~al~~~d~~~l~~~m~~~~~ll~~l~----~~ 74 (135) T d1k47a2 2 PTLECDFLVGWTKEV--AVSSHMVQQIKQ-NINQNFLTSSKETVVSLVEALEQGKSEKIIEQVEVASKLLEGLS----TD 74 (135) T ss_dssp CCSCCEEEEEECCCC--CCCHHHHHHHHT-TCCHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHC----TT T ss_pred CCCCCEEEEEECCCC--CCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCC----CC T ss_conf 999863899844993--547999999999-97767999999999999999992877999999999999998635----56 Q ss_pred EEEECHHHHHHHHHHHHHHHCCCEEEEEECCCC--EEEEEEC-HHHHHHHHHHHHHCCC Q ss_conf 686578899999999997428961999977798--1799955-8989999999763210 Q gi|254781016|r 272 LLYWQKETIQGMERVWDARQQSIPIYFTLDAGP--NLKLLFT-HKIEETIKQFFPEITI 327 (355) Q Consensus 272 ~~Y~~~~t~~ii~~v~~~R~~g~~v~fT~DAGP--Nv~il~~-~~~~~~i~~~l~~i~~ 327 (355) + .+|.--+++ ...++.|...-.| .||= .+.+|+. +++.+.|.+.+.+.++ T Consensus 75 i--~~~~l~~l~---~~a~~~g~~ak~~-GaGgGG~~i~l~~~~~~~~~i~~~~~~~Gi 127 (135) T d1k47a2 75 I--YTPLLRQLK---EASQDLQAVAKSS-GAGGGDCGIALSFDAQSTKTLKNRWADLGI 127 (135) T ss_dssp T--SCHHHHHHH---HTTTTSSEEEEEC-SSCSSSEEEEEECSHHHHHHHHHHHHHTTC T ss_pred C--CCHHHHHHH---HHHHHHCCCHHCC-CCCCCCEEEEEECCHHHHHHHHHHHHHCCC T ss_conf 7--880789999---9999706002014-676788589986283149999999998798 No 14 >d1s4ea2 d.58.26.7 (A:181-351) Galactokinase {Archaeon Pyrococcus furiosus [TaxId: 2261]} Probab=90.34 E-value=0.57 Score=23.99 Aligned_cols=84 Identities=12% Similarity=0.063 Sum_probs=55.5 Q ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHHCCCEEEEEECCCCE--EEEE Q ss_conf 55099999999809999999999999998999870389956865788999999999974289619999777981--7999 Q gi|254781016|r 232 STDLAHIKQAIIDQDFIKLGEVAEKNALKMHATMIAASPPLLYWQKETIQGMERVWDARQQSIPIYFTLDAGPN--LKLL 309 (355) Q Consensus 232 ~~~~~~~~~ai~~~Df~~l~~i~e~dal~mHa~~~~s~P~~~Y~~~~t~~ii~~v~~~R~~g~~v~fT~DAGPN--v~il 309 (355) ..+..+..+|++++||+.||+++-.+-..|-..+-.| +|+.-.+++... +.|.--+==+.+|-- +..| T Consensus 65 n~Rv~~~~~al~~~d~~~~G~lm~~sh~sl~~~~evS-------~~eld~lv~~a~---~~Ga~GaRmtGgGfGG~viaL 134 (171) T d1s4ea2 65 NARVLEVRDALKEGDIEKVGKILTTAHWDLAENYRVS-------CEELDFFVKKAM---ELGAYGARLTGAGFGGSAIAL 134 (171) T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCC-------CHHHHHHHHHHH---HTTCSEEEECSSCSEEEEEEE T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCC-------CHHHHHHHHHHH---HCCCCCEEEECCCCCCEEEEE T ss_conf 8877889998641558899999999999898856058-------878999999986---436674255238998079998 Q ss_pred ECHHHHHHHHHHHHHC Q ss_conf 5589899999997632 Q gi|254781016|r 310 FTHKIEETIKQFFPEI 325 (355) Q Consensus 310 ~~~~~~~~i~~~l~~i 325 (355) ++++..+.+.+.+.+. T Consensus 135 v~~~~~~~~~~~i~~~ 150 (171) T d1s4ea2 135 VDKDKAKTIGDAILRE 150 (171) T ss_dssp EEGGGHHHHHHHHHHH T ss_pred ECHHHHHHHHHHHHHH T ss_conf 5577799999999999 No 15 >d1piea2 d.58.26.7 (A:214-396) Galactokinase {Lactococcus lactis [TaxId: 1358]} Probab=85.83 E-value=1.1 Score=22.08 Aligned_cols=83 Identities=12% Similarity=0.079 Sum_probs=52.6 Q ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHH-CCCEEEEEECCC--CEEEE Q ss_conf 550999999998099999999999999989998703899568657889999999999742-896199997779--81799 Q gi|254781016|r 232 STDLAHIKQAIIDQDFIKLGEVAEKNALKMHATMIAASPPLLYWQKETIQGMERVWDARQ-QSIPIYFTLDAG--PNLKL 308 (355) Q Consensus 232 ~~~~~~~~~ai~~~Df~~l~~i~e~dal~mHa~~~~s~P~~~Y~~~~t~~ii~~v~~~R~-~g~~v~fT~DAG--PNv~i 308 (355) ..+..+..+|++++|++.||+++-.+-..|-..+..|. |+.-.+ |...++ .|.--+==+.+| =-|.. T Consensus 74 n~Rv~~a~~al~~~d~~~~G~lm~~Sh~sl~~~~evs~-------~elD~L---v~~a~~~~G~~GaRmtGgGfGGcvia 143 (183) T d1piea2 74 NNRTKIAQKAFVAGNLTKFGELLNASHASLKDDYEVTG-------LELDTL---AETAQKQAGVLGARMTGAGFGGCAIA 143 (183) T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTSCCCC-------HHHHHH---HHHHHHSTTEEEEEECSSCSSSEEEE T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCC-------CHHHHH---HHHHHHHCCCEEEECCCCCCCCEEEE T ss_conf 98878756555303599999999998999999733799-------158899---99999737990864453688846899 Q ss_pred EECHHHHHHHHHHHHH Q ss_conf 9558989999999763 Q gi|254781016|r 309 LFTHKIEETIKQFFPE 324 (355) Q Consensus 309 l~~~~~~~~i~~~l~~ 324 (355) |.+++..+.+.+.+.+ T Consensus 144 lv~~~~~~~~~~~i~~ 159 (183) T d1piea2 144 LVAHDNVSAFRKAVGQ 159 (183) T ss_dssp EEEGGGHHHHHHHHHH T ss_pred EECHHHHHHHHHHHHH T ss_conf 9658779999999999 No 16 >d1kkha2 d.58.26.3 (A:181-317) Mevalonate kinase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Probab=73.53 E-value=2.6 Score=19.35 Aligned_cols=110 Identities=12% Similarity=0.052 Sum_probs=61.5 Q ss_pred EECCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHH Q ss_conf 97287667521056798876185689999730550999999998099999999999999989998703899568657889 Q gi|254781016|r 200 KIIDREKKIGSREAMEITRHHSPFFTQWTQQISTDLAHIKQAIIDQDFIKLGEVAEKNALKMHATMIAASPPLLYWQKET 279 (355) Q Consensus 200 iv~~~~K~vsSt~gm~~~v~tSp~y~~r~~~~~~~~~~~~~ai~~~Df~~l~~i~e~dal~mHa~~~~s~P~~~Y~~~~t 279 (355) ++....+.-++.+..+. |....-.+.-++... .-..+|++.+|++.||++...+-..+-++ ... +|.. T Consensus 15 v~~~t~~~~~t~~~v~~-v~~~~~~~~i~~~~~---~~~~~al~~~d~~~lg~lm~~~~~~l~~l--gvs------~~~i 82 (137) T d1kkha2 15 IVYAEKRKKKTAELVNE-VAKIENKDEIFKEID---KVIDEALKIKNKEDFGKLMTKNHELLKKL--NIS------TPKL 82 (137) T ss_dssp EEEEECCCSCHHHHHHH-HHTCTTHHHHHHHHH---HHHHHHHHCCSHHHHHHHHHHHHHHHHTT--TCC------CHHH T ss_pred EEECCCCCCHHHHHHHH-HHHHHHHHHHHHHHH---HHHHHHHHCCCHHHHHHHHHHHHHHHHHH--CCC------CHHH T ss_conf 99736833429999999-999976229999999---99999998289999999999999999870--589------5899 Q ss_pred HHHHHHHHHHHHCCCEEEEEECCC--CEEEEEECHHHHHHHHHHHHHC Q ss_conf 999999999742896199997779--8179995589899999997632 Q gi|254781016|r 280 IQGMERVWDARQQSIPIYFTLDAG--PNLKLLFTHKIEETIKQFFPEI 325 (355) Q Consensus 280 ~~ii~~v~~~R~~g~~v~fT~DAG--PNv~il~~~~~~~~i~~~l~~i 325 (355) -.+++.. ++.|..+ =-..|| =-+..|++++..+.+.+.+..- T Consensus 83 d~l~~~~---~~~g~Ga-KitGAGgGG~~ial~~~~~~~~~~~~l~~~ 126 (137) T d1kkha2 83 DRIVDIG---NRFGFGA-KLTGAGGGGCVIILVNEEKEKELLKELNKE 126 (137) T ss_dssp HHHHHHH---HHHSSEE-EECSSSSSEEEEEECCGGGHHHHHHHHHTS T ss_pred HHHHHHH---HHCCCCC-CCCCCCCCCEEEEEECHHHHHHHHHHHHHC T ss_conf 9999999---8538874-201589981799985735499999999981 No 17 >d1sr2a_ a.24.10.4 (A:) Sensor-like histidine kinase YojN, C-terminal domain {Escherichia coli [TaxId: 562]} Probab=55.25 E-value=5 Score=17.37 Aligned_cols=59 Identities=14% Similarity=0.229 Sum_probs=40.0 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHH Q ss_conf 856899997305509999999980999999999999999899987038995686578899999999997 Q gi|254781016|r 221 SPFFTQWTQQISTDLAHIKQAIIDQDFIKLGEVAEKNALKMHATMIAASPPLLYWQKETIQGMERVWDA 289 (355) Q Consensus 221 Sp~y~~r~~~~~~~~~~~~~ai~~~Df~~l~~i~e~dal~mHa~~~~s~P~~~Y~~~~t~~ii~~v~~~ 289 (355) +.++.--++..+.++..+.+|+.++||+.+.+++- +|+..+-.-. -+.-.++...+... T Consensus 34 ~~~~~lF~~~~p~~l~~L~~a~~~~D~~~l~~~aH----~LKGs~~~~G------a~~l~~~~~~lE~~ 92 (116) T d1sr2a_ 34 SGYYALFVDTVPDDVKRLYTEAATSDFAALAQTAH----RLKGVFAMLN------LVPGKQLCETLEHL 92 (116) T ss_dssp HTTHHHHTTTHHHHHHHHHHHHHHTCHHHHHHHHH----HHHHHHHHHT------CHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH----HHHHHHHHCC------CHHHHHHHHHHHHH T ss_conf 89999999861999999999998749999999999----9988798719------63999989999999 No 18 >d1wuua2 d.58.26.7 (A:217-392) Galactokinase {Human (Homo sapiens) [TaxId: 9606]} Probab=48.31 E-value=7.2 Score=16.28 Aligned_cols=83 Identities=13% Similarity=0.051 Sum_probs=52.2 Q ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHH-CCCE-EEEEECCCC--EEE Q ss_conf 550999999998099999999999999989998703899568657889999999999742-8961-999977798--179 Q gi|254781016|r 232 STDLAHIKQAIIDQDFIKLGEVAEKNALKMHATMIAASPPLLYWQKETIQGMERVWDARQ-QSIP-IYFTLDAGP--NLK 307 (355) Q Consensus 232 ~~~~~~~~~ai~~~Df~~l~~i~e~dal~mHa~~~~s~P~~~Y~~~~t~~ii~~v~~~R~-~g~~-v~fT~DAGP--Nv~ 307 (355) ..++....+|++++|++.||+++-.+-..|-..+--|. |+.-.++ ...++ .|.- +=.| .||= -+. T Consensus 69 ~~Rv~~~~~al~~~d~~~lg~Lm~~sh~sL~~~~~vS~-------peld~lv---~~a~~~~G~lGaRlt-GaGfGGcvi 137 (176) T d1wuua2 69 IRRTAQAAAALRRGDYRAFGRLMVESHRSLRDDYEVSC-------PELDQLV---EAALAVPGVYGSRMT-GGGFGGCTV 137 (176) T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTSCCCC-------HHHHHHH---HHHHTSTTEEEEEEC-SSCSEEEEE T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCC-------HHHHHHH---HHHHHCCCCCEEEEC-CCCCCCEEE T ss_conf 88667787776226899999999999999999885468-------6699999---999964999552540-489870799 Q ss_pred EEECHHHHHHHHHHHHHC Q ss_conf 995589899999997632 Q gi|254781016|r 308 LLFTHKIEETIKQFFPEI 325 (355) Q Consensus 308 il~~~~~~~~i~~~l~~i 325 (355) .|++++..+++.+.+.+. T Consensus 138 aLv~~~~~~~~~~~~~~~ 155 (176) T d1wuua2 138 TLLEASAAPHAMRHIQEH 155 (176) T ss_dssp EEEEGGGHHHHHHHHHHH T ss_pred EEECHHHHHHHHHHHHHH T ss_conf 995535699999999998 No 19 >d1kvka2 d.58.26.3 (A:226-394) Mevalonate kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Probab=39.57 E-value=9.7 Score=15.37 Aligned_cols=119 Identities=15% Similarity=0.151 Sum_probs=59.6 Q ss_pred CCCCEEEEEEECCCCCCCCCCHHHHHHH----HHCH-HHHHHHHHHHHHHHHHHHHH-------HHCCHHHHHHHHHHHH Q ss_conf 8642158999728766752105679887----6185-68999973055099999999-------8099999999999999 Q gi|254781016|r 191 WPDLRIGLLKIIDREKKIGSREAMEITR----HHSP-FFTQWTQQISTDLAHIKQAI-------IDQDFIKLGEVAEKNA 258 (355) Q Consensus 191 ~~dl~~~i~iv~~~~K~vsSt~gm~~~v----~tSp-~y~~r~~~~~~~~~~~~~ai-------~~~Df~~l~~i~e~da 258 (355) .|+++ +++++++.+.. |..+...| +..| .+..-++...+-..++.+++ ..+|+..|++++..+- T Consensus 2 lP~l~--lll~~Tgv~r~--T~~~v~~V~~~~~~~~~~~~~~l~~~~~l~~~a~~~l~~~~~~~~~~d~~~lg~lm~~~~ 77 (169) T d1kvka2 2 LPALQ--ILLTNTKVPRS--TKALVAGVRSRLIKFPEIMAPLLTSIDAISLECERVLGEMAAAPVPEQYLVLEELMDMNQ 77 (169) T ss_dssp CCCEE--EEEEECCCCCC--HHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHH T ss_pred CCCEE--EEEECCCCCCH--HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH T ss_conf 99837--99976998405--999999999999859688999998875999999997642654301433999999999958 Q ss_pred HHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHHCCCEEEEEECC--CCEEEEEECHHH----HHHHHHHHHHC Q ss_conf 98999870389956865788999999999974289619999777--981799955898----99999997632 Q gi|254781016|r 259 LKMHATMIAASPPLLYWQKETIQGMERVWDARQQSIPIYFTLDA--GPNLKLLFTHKI----EETIKQFFPEI 325 (355) Q Consensus 259 l~mHa~~~~s~P~~~Y~~~~t~~ii~~v~~~R~~g~~v~fT~DA--GPNv~il~~~~~----~~~i~~~l~~i 325 (355) -.+..+- -| +|..-.+++.. ++.|..+-.| .| |=-+..|++++. .+.+.+.+... T Consensus 78 ~lL~~lg-VS-------~~~ld~lv~~a---~~~g~gaKlt-GAGgGGc~ial~~~~~~~~~~~~i~~~l~~~ 138 (169) T d1kvka2 78 HHLNALG-VG-------HASLDQLCQVT---AAHGLHSKLT-GAGGGGCGITLLKPGLERAKVEAAKQALTGC 138 (169) T ss_dssp HHHHHHT-CC-------CHHHHHHHHHH---HHTTCEEEEC-SSCSSSEEEEEECTTCCHHHHHHHHHHHHHT T ss_pred HHHHHCC-CC-------HHHHHHHHHHH---HHCCCCCCCC-CCCCCCEEEEEECCCCHHHHHHHHHHHHHHC T ss_conf 8887417-67-------19999999999---9829551014-7898876999856642399999999999975 No 20 >d2iw0a1 c.6.2.3 (A:29-248) Chitin deacetylase {Bean anthracnose fungus (Colletotrichum lindemuthianum) [TaxId: 290576]} Probab=35.93 E-value=10 Score=15.16 Aligned_cols=35 Identities=11% Similarity=0.125 Sum_probs=17.5 Q ss_pred CCCEEEEECCCCEEEEEEECC-----CCCCEEEECCEECC Q ss_conf 984346812781079999717-----88857998787256 Q gi|254781016|r 50 NNSLSLSLGHLGTITHITVID-----SDADCIILNGQKIS 84 (355) Q Consensus 50 n~SiS~TL~~~~T~T~v~~~~-----~~~d~~~lnG~~~~ 84 (355) ...++||-|+-....+-...+ .-.-+|++.|+... T Consensus 13 ~~~VaLTFDDGp~~~t~~il~~L~~~~i~aTFFv~g~~i~ 52 (220) T d2iw0a1 13 PGLVALTYDDGPFTFTPQLLDILKQNDVRATFFVNGNNWA 52 (220) T ss_dssp SSEEEEEEESCSCTTHHHHHHHHHHHTCCCEEEECSBSSS T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHCCCCEEEEEECCCCC T ss_conf 9989998707984649999999998699789999655456 No 21 >d1ny1a_ c.6.2.3 (A:) Probable polysaccharide deacetylase PdaA {Bacillus subtilis [TaxId: 1423]} Probab=33.15 E-value=10 Score=15.16 Aligned_cols=34 Identities=9% Similarity=0.172 Sum_probs=16.5 Q ss_pred CCEEEEECCCCEE-EE--E-EEC-C-CCCCEEEECCEECC Q ss_conf 8434681278107-99--9-971-7-88857998787256 Q gi|254781016|r 51 NSLSLSLGHLGTI-TH--I-TVI-D-SDADCIILNGQKIS 84 (355) Q Consensus 51 ~SiS~TL~~~~T~-T~--v-~~~-~-~~~d~~~lnG~~~~ 84 (355) ..+.||-|+.... .+ + ... . .-+-+|++.|.... T Consensus 43 K~V~LTFDDGp~~~~~~~il~~L~~~~i~aTfFv~g~~~~ 82 (235) T d1ny1a_ 43 KTIYLTFDNGYENGYTPKVLDVLKKHRVTGTFFVTGHFVK 82 (235) T ss_dssp SEEEEEEEESSCCSCHHHHHHHHHHTTCCCEEEECHHHHH T ss_pred CEEEEEEECCCCCCCHHHHHHHHHHCCCCEEEECCHHHHH T ss_conf 8699999578996668999999997699879713288787 No 22 >d2a0ba_ a.24.10.1 (A:) Aerobic respiration control sensor protein, ArcB {Escherichia coli [TaxId: 562]} Probab=24.47 E-value=17 Score=13.68 Aligned_cols=34 Identities=9% Similarity=0.080 Sum_probs=28.3 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH Q ss_conf 5689999730550999999998099999999999 Q gi|254781016|r 222 PFFTQWTQQISTDLAHIKQAIIDQDFIKLGEVAE 255 (355) Q Consensus 222 p~y~~r~~~~~~~~~~~~~ai~~~Df~~l~~i~e 255 (355) .+.....+..+.++..+..++.++|++.+.+++- T Consensus 26 ~~l~~F~~~~~~~l~~l~~a~~~~d~~~~~~~aH 59 (118) T d2a0ba_ 26 DGLAVFEKMMPGYVSVLESNLTAQDKKGIVEEGH 59 (118) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH T ss_conf 9999999986999999999988779999999999 No 23 >d2ts1a_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Bacillus stearothermophilus, nca 1503 [TaxId: 1422]} Probab=21.77 E-value=19 Score=13.32 Aligned_cols=57 Identities=18% Similarity=0.252 Sum_probs=39.1 Q ss_pred EEECCCCCCCCCCHHHHHHH---HHCH--HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH Q ss_conf 99728766752105679887---6185--6899997305509999999980999999999999 Q gi|254781016|r 199 LKIIDREKKIGSREAMEITR---HHSP--FFTQWTQQISTDLAHIKQAIIDQDFIKLGEVAEK 256 (355) Q Consensus 199 ~iv~~~~K~vsSt~gm~~~v---~tSp--~y~~r~~~~~~~~~~~~~ai~~~Df~~l~~i~e~ 256 (355) +.-.++ +|.+++.|-.... .||| +|+-|.....+.+.+....+..-+.+++.++.+. T Consensus 223 L~~~~G-~K~~ks~~n~i~l~~~~tsp~~~yq~~~n~~D~~v~~yl~~~T~~~~eeI~~i~~~ 284 (319) T d2ts1a_ 223 VTKADG-TKFGKTESGTIWLDKEKTSPYEFYQFWINTDDRDVIRYLKYFTFLSKEEIEALEQE 284 (319) T ss_dssp CCCTTS-CCTTCCSSCCCBSSTTTSCHHHHHHHHHTCCHHHHHHHHHHHCCCCHHHHHHHHHH T ss_pred CCCCCC-CEEEECCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHH T ss_conf 025666-43211379986023255887899977168988999999999716999999999999 No 24 >d1rpxa_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Potato (Solanum tuberosum) [TaxId: 4113]} Probab=20.95 E-value=11 Score=15.12 Aligned_cols=42 Identities=7% Similarity=0.244 Sum_probs=26.1 Q ss_pred HHHCCCCCEEE--ECHHHHHHHHHHHHHHHC-CCEEEEEECCCCE Q ss_conf 87038995686--578899999999997428-9619999777981 Q gi|254781016|r 264 TMIAASPPLLY--WQKETIQGMERVWDARQQ-SIPIYFTLDAGPN 305 (355) Q Consensus 264 ~~~~s~P~~~Y--~~~~t~~ii~~v~~~R~~-g~~v~fT~DAGPN 305 (355) ++|+..|+|.- +.+.+++-|+.+++++.+ +..+..-.|.|=| T Consensus 145 llM~V~PGf~GQ~f~~~~~~kI~~~~~~~~~~~~~~~I~vDGGIn 189 (230) T d1rpxa_ 145 LIMSVNPGFGGQSFIESQVKKISDLRKICAERGLNPWIEVDGGVG 189 (230) T ss_dssp EEESSCTTCSSCCCCTTHHHHHHHHHHHHHHHTCCCEEEEESSCC T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCC T ss_conf 998736886420013566899999877777537734899987768 Done!