RPS-BLAST 2.2.22 [Sep-27-2009]
Database: mmdb70
33,805 sequences; 4,956,049 total letters
Searching..................................................done
Query= gi|254781016|ref|YP_003065429.1| diphosphomevalonate
decarboxylase/isopentenyl-diphosphate delta-isomerase [Candidatus
Liberibacter asiaticus str. psy62]
(355 letters)
>1fi4_A Mevalonate 5-diphosphate decarboxylase; mixed alpha/beta
structure, ATP binding, cholesterol biosynthesis,
structural genomics, PSI; 2.27A {Saccharomyces
cerevisiae} (A:32-61,A:179-397)
Length = 249
Score = 172 bits (438), Expect = 6e-44
Identities = 41/199 (20%), Positives = 81/199 (40%), Gaps = 10/199 (5%)
Query: 162 RSFYRGFCEWICGTDQNGMDSFAVPF--NNQWPDLRIGLLKIIDREKKIGSREAMEITRH 219
+S + G+ W G ++G DS AV ++ WP + +L + D +K + S + ++T
Sbjct: 30 QSLFGGYVAWEXGKAEDGHDSXAVQIADSSDWPQXKACVLVVSDIKKDVSSTQGXQLTVA 89
Query: 220 HSPFFTQW-TQQISTDLAHIKQAIIDQDFIKLGEVAEKNALKMHATMIAASPPLLYWQKE 278
S F + + ++AI+++DF + ++ HAT + + PP+ Y
Sbjct: 90 TSELFKERIEHVVPKRFEVXRKAIVEKDFATFAKETXXDSNSFHATCLDSFPPIFYXNDT 149
Query: 279 TIQGMERVWDARQQ--SIPIYFTLDAGPNLKLLFTHK----IEETIKQFFPEITIIDP-L 331
+ + + Q + +T DAGPN L + + + I + F + D
Sbjct: 150 SKRIISWCHTINQFYGETIVAYTFDAGPNAVLYYLAENESKLFAFIYKLFGSVPGWDKKF 209
Query: 332 DSPDLWSTKDSLSQKNSIE 350
+ L + N
Sbjct: 210 TTEQLEAFNHQFESSNFTA 228
Score = 58.3 bits (141), Expect = 1e-09
Identities = 19/27 (70%), Positives = 24/27 (88%)
Query: 31 NIALCKYWGKRDSKLNLPLNNSLSLSL 57
NIA KYWGKRD+KLNLP N+S+S++L
Sbjct: 2 NIATLKYWGKRDTKLNLPTNSSISVTL 28
>2hk2_A Diphosphomevalonate decarboxylase; mevalonate diphosphate
decarboxylase, lyase; 2.30A {Staphylococcus aureus} PDB:
2hk3_A (A:176-322)
Length = 147
Score = 171 bits (436), Expect = 1e-43
Identities = 58/143 (40%), Positives = 80/143 (55%), Gaps = 4/143 (2%)
Query: 191 WPDLRIGLLKIIDREKKIGSREAMEITRHHSPFFTQWTQQISTDLAHIKQAIIDQDFIKL 250
DL + + I KK+ SR M +TR+ S F+ W I DLA K AI D+DF +L
Sbjct: 2 EDDLAMIFVVINQHSKKVPSRYGMSLTRNTSRFYQYWLDHIDEDLAEAKAAIQDKDFKRL 61
Query: 251 GEVAEKNALKMHATMIAASPPLLYWQKETIQGMERVWDARQQSIPIYFTLDAGPNLKLLF 310
GEV E+N L+MHAT + ++PP Y +E+ M V + R+ P YFT+DAGPN+K+L
Sbjct: 62 GEVIEENGLRMHATNLGSTPPFTYLVQESYDVMALVHECREAGYPCYFTMDAGPNVKILV 121
Query: 311 THK----IEETIKQFFPEITIID 329
K I + + F IID
Sbjct: 122 EKKNKQQIIDKLLTQFDNNQIID 144
>2hke_A Diphosphomevalonate decarboxylase, putative; mevalonate
diphosphate decarboxylase, lyase; 1.80A {Trypanosoma
brucei} (A:179-364)
Length = 186
Score = 153 bits (389), Expect = 3e-38
Identities = 24/141 (17%), Positives = 53/141 (37%), Gaps = 7/141 (4%)
Query: 191 WPDLRIGLLKIIDREKKIGSREAMEITRHHSPFFTQWTQQI-STDLAHIKQAIIDQDFIK 249
WP++++ + +K + S + M+ + SP + + + +AI +DF
Sbjct: 2 WPEIQVMCAVLKGAQKDVSSTKGMQQSLKTSPLMKKRISETVPERMKIASRAIKARDFAT 61
Query: 250 LGEVAEKNALKMHATMIAASPPLLYWQKETIQGMERVWDARQQ--SIPIYFTLDAGPNLK 307
E+A + + P + Y +++ + V + + +T DAG N
Sbjct: 62 FAEIAMLESDDLQEICATTEPKITYATEDSYAMIRLVKAYNAKKGRTALAYTFDAGANCF 121
Query: 308 LLFTHK----IEETIKQFFPE 324
L + + + FP
Sbjct: 122 LFVLKEDLPEAVAMLMEHFPT 142
>2gs8_A Mevalonate pyrophosphate decarboxylase; structural genomics,
PSI, protein structure initiative; HET: MSE; 1.50A
{Streptococcus pyogenes m1 gas} (A:170-317)
Length = 148
Score = 152 bits (385), Expect = 9e-38
Identities = 46/133 (34%), Positives = 66/133 (49%)
Query: 193 DLRIGLLKIIDREKKIGSREAMEITRHHSPFFTQWTQQISTDLAHIKQAIIDQDFIKLGE 252
L + +K I SRE ++ R S F QW +Q + D H + +F K+G+
Sbjct: 2 KXAXIXLVLNAAKKPISSREGXKLCRDTSTTFDQWVEQSAIDYQHXLTYLKTNNFEKVGQ 61
Query: 253 VAEKNALKMHATMIAASPPLLYWQKETIQGMERVWDARQQSIPIYFTLDAGPNLKLLFTH 312
+ E NAL HAT A+PP Y KE+ Q E V + RQ+ YFT DAGPN+K+L
Sbjct: 62 LTEANALAXHATTKTANPPFSYLTKESYQAXEAVKELRQEGFACYFTXDAGPNVKVLCLE 121
Query: 313 KIEETIKQFFPEI 325
K + + +
Sbjct: 122 KDLAQLAERLGKN 134
>3lto_A Mevalonate diphosphate decarboxylase; protein structure
initiative II(PSI II), NYSGXRC, structural genomics;
2.27A {Legionella pneumophila} (A:173-323)
Length = 151
Score = 151 bits (383), Expect = 1e-37
Identities = 30/136 (22%), Positives = 57/136 (41%), Gaps = 2/136 (1%)
Query: 191 WPDLRIGLLKIIDREKKIGSREAMEITRHHSPFFTQWTQQISTDLAHIKQAIIDQDFIKL 250
+ DL ++ I +EK+I SR A + SPF+ +++ +L + A ++D+ +
Sbjct: 1 YKDLLHQVIVISSQEKEIPSRVAHK-LVKTSPFYETRSERAEANLKLLLNAFENKDWTSI 59
Query: 251 GEVAEKNALKMHATMIAASPPLLYWQKETIQGMERVWDARQQS-IPIYFTLDAGPNLKLL 309
++ L H P Y T+ + + + T DAGPN+ LL
Sbjct: 60 YQICWHEFLDXHQLFKTCEKPFSYITDNTLHILSVIEKFWNEKGDGPVVTXDAGPNVHLL 119
Query: 310 FTHKIEETIKQFFPEI 325
+ + +QF +
Sbjct: 120 YRSDQTDLARQFKSDH 135
>3f0n_A Mevalonate pyrophosphate decarboxylase; cholesterol
biosynthesis, lipid synthesis, lyase, steroid
biosynthesis, sterol biosynthesis; 1.90A {Mus musculus}
PDB: 3d4j_A (A:205-389)
Length = 185
Score = 115 bits (289), Expect = 9e-27
Identities = 32/147 (21%), Positives = 59/147 (40%), Gaps = 7/147 (4%)
Query: 191 WPDLRIGLLKIIDREKKIGSREAMEITRHHSPFFTQW-TQQISTDLAHIKQAIIDQDFIK 249
WP LRI +L + +K+ GS M+ + S + + + + I +QDF
Sbjct: 2 WPQLRILILVVSADKKQTGSTVGMQTSVETSTLLKFRAESVVPERMKEMTRCIQEQDFQG 61
Query: 250 LGEVAEKNALKMHATMIAASPPLLYWQKETIQGMERVWDARQQS--IPIYFTLDAGPNLK 307
++ K++ + HAT + PP+ Y + + ++ V + +T DAGPN
Sbjct: 62 FAQLTMKDSNQFHATCLDTFPPISYLNDTSRRIIQLVHRFNTHHGQTKVAYTFDAGPNAV 121
Query: 308 LLFTHK----IEETIKQFFPEITIIDP 330
+ ++ FP D
Sbjct: 122 IFTLEDTVAEFVAAVRHSFPPAANGDK 148
>3f0n_A Mevalonate pyrophosphate decarboxylase; cholesterol
biosynthesis, lipid synthesis, lyase, steroid
biosynthesis, sterol biosynthesis; 1.90A {Mus musculus}
PDB: 3d4j_A (A:1-204,A:390-414)
Length = 229
Score = 99 bits (248), Expect = 4e-22
Identities = 68/207 (32%), Positives = 89/207 (42%), Gaps = 23/207 (11%)
Query: 5 LRHILHRYIGECNPKINEKS----SAFLPSNIALCKYWGKRDSKLNLPLNNSLSLSLGHL 60
+ H H G N + P NIA+ KYWGKRD L LP+N+SLS++L
Sbjct: 1 MHHHHHHSSGRENLYFQGPQDLMVTCTAPVNIAVIKYWGKRDEALILPINSSLSVTLHQD 60
Query: 61 GTITHITVIDSDADCIILNGQKISSQSSFFKKTTQFCDLFRQFSKVY------------- 107
T TV S + + R+ ++
Sbjct: 61 QLKTTTTVAISKDFTEDRIWLNGREEDVGQPRLQACLREIRRLARKRRSTEDGDTLPLSL 120
Query: 108 ---FLIETSNNIPTKAGLASSASGFAALTLALFRIYSIPEKSESLSRVARLGSGSACRSF 164
+ + NN PT AGLASSA+G+A L L ++Y + LS VAR GSGSACRS
Sbjct: 121 SYKVHVASVNNFPTAAGLASSAAGYACLAYTLAQVYGVEGD---LSEVARRGSGSACRSL 177
Query: 165 YRGFCEWICGTDQNGMDSFAVPFNNQW 191
Y GF EW G +G DS A +W
Sbjct: 178 YGGFVEWQMGEQADGKDSIARQIAPEW 204
>2gs8_A Mevalonate pyrophosphate decarboxylase; structural genomics,
PSI, protein structure initiative; HET: MSE; 1.50A
{Streptococcus pyogenes m1 gas} (A:1-169)
Length = 169
Score = 96.0 bits (238), Expect = 7e-21
Identities = 49/170 (28%), Positives = 78/170 (45%), Gaps = 4/170 (2%)
Query: 17 NPKINEKSSAFLPSNIALCKYWGKRDSKLNLPLNNSLSLSLGHLGTITHITVIDSDADCI 76
N + +NIA+ KYWGK + +P +S+SL+L + T T ++ + A
Sbjct: 2 NAXDPNVITVTSYANIAIIKYWGKENQAKXIPSTSSISLTLENXFTTTSVSFLPDTATSD 61
Query: 77 ILNGQKISSQSSFFKKTTQFCDLFRQFSKVYFLIETSNNIPTKAGLASSASGFAALTLAL 136
I K + D FRQ + + ET NN PT AGL+SS+SG +AL A
Sbjct: 62 QFYINGILQNDEEHTKISAIIDQFRQPGQAFVKXETQNNXPTAAGLSSSSSGLSALVKAC 121
Query: 137 FRIYSIPEKSESLSRVARLGSGSACRSFYRGFCEWICGTDQNGMDSFAVP 186
+++ ++L++ A+ SGS+ RSF+ W + V
Sbjct: 122 DQLFDTQLDQKALAQKAKFASGSSSRSFFGPVAAWDKD----SGAIYKVE 167
>3lto_A Mevalonate diphosphate decarboxylase; protein structure
initiative II(PSI II), NYSGXRC, structural genomics;
2.27A {Legionella pneumophila} (A:1-172)
Length = 172
Score = 82.5 bits (203), Expect = 7e-17
Identities = 56/164 (34%), Positives = 81/164 (49%), Gaps = 11/164 (6%)
Query: 25 SAFLPSNIALCKYWGKRDSKLNLPLNNSLSLSLGHLGTITHITVIDS---DADCIILNGQ 81
A P+NIAL KY GK+D NLP N+SLS +L +L + + + + + + + G
Sbjct: 4 FAQAPANIALIKYXGKKDENSNLPDNSSLSYTLSNLLSSVKLEKLPTKKDIWEPLTIPGA 63
Query: 82 KISSQSSFFKKT-TQFCDLFRQFSKVY--FLIETSNNIPTKAGLASSASGFAALTLALFR 138
+ S +K +++ FLI++SNN P +GLASSAS FAALT
Sbjct: 64 PEFNLSVEAQKRFIDHLVRLKEYFGYVGGFLIQSSNNFPHSSGLASSASSFAALTKCASI 123
Query: 139 IYSIPEKSESLSR-----VARLGSGSACRSFYRGFCEWICGTDQ 177
S + S ++RLGSGS+CRSFY + W
Sbjct: 124 ALSELTQKPLPSIDEQAQLSRLGSGSSCRSFYAPWALWTGDKVS 167
>2hk2_A Diphosphomevalonate decarboxylase; mevalonate diphosphate
decarboxylase, lyase; 2.30A {Staphylococcus aureus} PDB:
2hk3_A (A:1-175,A:323-331)
Length = 184
Score = 80.7 bits (198), Expect = 3e-16
Identities = 65/164 (39%), Positives = 86/164 (52%), Gaps = 1/164 (0%)
Query: 25 SAFLPSNIALCKYWGKRDSKLNLPLNNSLSLSLGHLGTITHITVIDS-DADCIILNGQKI 83
A +NIAL KYWGK+D L +P+NNS+S++L T T +T D D LNG+K+
Sbjct: 10 KARAHTNIALIKYWGKKDEALIIPMNNSISVTLEKFYTETKVTFNDQLTQDQFWLNGEKV 69
Query: 84 SSQSSFFKKTTQFCDLFRQFSKVYFLIETSNNIPTKAGLASSASGFAALTLALFRIYSIP 143
S + R Y IE+ N +PT AGLASSAS +AAL A + +
Sbjct: 70 SGKELEKISKYMDIVRNRAGIDWYAEIESDNFVPTAAGLASSASAYAALAAACNQALDMQ 129
Query: 144 EKSESLSRVARLGSGSACRSFYRGFCEWICGTDQNGMDSFAVPF 187
+ LSR+AR+GSGSA RS Y GF EW G + +
Sbjct: 130 LSDKDLSRLARIGSGSASRSIYGGFAEWEKGYSDETSYAVPLES 173
>2hke_A Diphosphomevalonate decarboxylase, putative; mevalonate
diphosphate decarboxylase, lyase; 1.80A {Trypanosoma
brucei} (A:1-178,A:365-380)
Length = 194
Score = 79.1 bits (194), Expect = 7e-16
Identities = 58/172 (33%), Positives = 77/172 (44%), Gaps = 13/172 (7%)
Query: 25 SAFLPSNIALCKYWGKRDSK--LNLPLNNSLS--LSLGHLGTITHITVIDSDADCIILNG 80
+ P NIA KYWGKR+ L LP N+S S LS + T + + D +
Sbjct: 7 TVEAPINIAFIKYWGKREGGETLILPTNDSFSITLSASPFRSKTSVELRDDIETDTLRLN 66
Query: 81 QKISSQSSFFKKTTQFCDLFRQFSKVYFL-----IETSNNIPTKAGLASSASGFAALTLA 135
+ R I + NN PT AG+ASSASG+ A++ A
Sbjct: 67 GTEVDVG-KTPRVQSMLLHLRSTCPEELKNKKVNIVSENNFPTAAGMASSASGYCAMSAA 125
Query: 136 LFRIYSIPEKSESLSRVARLGSGSACRSFYRGFCEWICGTDQNGMDSFAVPF 187
L R + ++S +ARLGSGSACRS + GF W G +G D A F
Sbjct: 126 LIRAFKSTT---NVSMLARLGSGSACRSAFGGFVIWNKGEKPDGSDCVATQF 174
>1fi4_A Mevalonate 5-diphosphate decarboxylase; mixed alpha/beta
structure, ATP binding, cholesterol biosynthesis,
structural genomics, PSI; 2.27A {Saccharomyces
cerevisiae} (A:1-31,A:62-178,A:398-416)
Length = 167
Score = 60.5 bits (146), Expect = 3e-10
Identities = 40/128 (31%), Positives = 58/128 (45%), Gaps = 12/128 (9%)
Query: 59 HLGTITHITVIDS-DADCIILNGQKISSQSSFFKKTTQ---------FCDLFRQFSKVY- 107
L T+T + D + LNG+ S + + + +
Sbjct: 33 DLRTLTSAATAPEFERDTLWLNGEPHSIDNERTQNCLRDLRQLRKEXESKDASLPTLSQW 92
Query: 108 -FLIETSNNIPTKAGLASSASGFAALTLALFRIYSIPEKSESLSRVARLGSGSACRSFYR 166
I + NN PT AGLASSA+GFAAL A+ ++Y +P+ + +SR+AR GSGSACR
Sbjct: 93 KLHIVSENNFPTAAGLASSAAGFAALVSAIAKLYQLPQSTSEISRIARKGSGSACRGPQE 152
Query: 167 GFCEWICG 174
I
Sbjct: 153 TNESLIDA 160
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae} (B:1772-1800,B:1916-2006)
Length = 120
Score = 39.4 bits (92), Expect = 7e-04
Identities = 16/52 (30%), Positives = 18/52 (34%), Gaps = 25/52 (48%)
Query: 135 ALFRIYSIPEKSESLSRVARLGSGSACRSFYRGFCEWICGTDQNGMDSFAVP 186
+L + SI ESL V FYRG T Q AVP
Sbjct: 1 SLADVMSI----ESLVEVV----------FYRGM------TMQV-----AVP 27
>2v8p_A 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase;
nucleotide-binding, isoprene biosynthesis, transferase,
ATP-binding, non-mevalonate; HET: CDP ADP; 2.1A {Aquifex
aeolicus} PDB: 2v2v_A* 2v2q_A* 2v34_A* 2v2z_A* 2vf3_A*
(A:1-158)
Length = 158
Score = 37.8 bits (87), Expect = 0.002
Identities = 12/53 (22%), Positives = 20/53 (37%), Gaps = 1/53 (1%)
Query: 110 IETSNNIPTKAGLASSASGFAALTLALFRIYSIPEKSESLSRVA-RLGSGSAC 161
I NIP AGL +S A + + + P E L + + + +
Sbjct: 84 IFIQKNIPPGAGLGGGSSNLAVVLKKVNELLGSPLSEEELRELVGSISADAPF 136
>3hul_A HSK, HK, homoserine kinase; structural genomics, putative
homoserine kinase, THRB, amino-acid biosynthesis,
ATP-binding, cytoplasm; 2.19A {Listeria monocytogenes}
(A:1-154,A:284-298)
Length = 169
Score = 37.0 bits (85), Expect = 0.004
Identities = 12/110 (10%), Positives = 26/110 (23%), Gaps = 6/110 (5%)
Query: 64 THITVIDSDADCIILNGQKISSQSSFFKKTTQFCDLFRQFSKVYFLIETSNNIPTKAGLA 123
+ + I + + + + +IP GL
Sbjct: 29 LTLDIGAEADSWYIEHNIGGGIPHDETNVIIETALNLAPNLT-PHHLVMTCDIPPARGLG 87
Query: 124 SSASGFAALTLALFRIYSIPEKSESLSRVA----RLGSGSACRSFYRGFC 169
SS++ A + + E R+A A + +
Sbjct: 88 SSSAAVVAGIELANTLAELNLSKEEKVRIAAEIEGHPDNVAP-AVLGNWV 136
>1kvk_A MK, mevalonate kinase; RMK, ATP, GHMP, transferase; HET:
ATP; 2.40A {Rattus norvegicus} (A:1-227,A:375-395)
Length = 248
Score = 35.8 bits (81), Expect = 0.008
Identities = 14/80 (17%), Positives = 25/80 (31%), Gaps = 2/80 (2%)
Query: 108 FLIETSNNIPTKAGLASSASGFAALTLALFRIYSIPEKSESLSRVARLGSGSACRSFYR- 166
I + +P AGL SSA+ + AL +S +
Sbjct: 129 LDIMVWSELPPGAGLGSSAAYSVCVAAALLTACEEVTNPLKDRGSIGSWPEEDLKSINKW 188
Query: 167 -GFCEWICGTDQNGMDSFAV 185
E + + +G+D+
Sbjct: 189 AYEGERVIHGNPSGVDNSVS 208
>1kkh_A Mevalonate kinase; mixed beta sheet, phosphate-binding loop,
beta-alpha-beta, transferase; 2.40A {Methanocaldococcus
jannaschii} (A:1-181)
Length = 181
Score = 34.9 bits (79), Expect = 0.015
Identities = 14/46 (30%), Positives = 22/46 (47%)
Query: 108 FLIETSNNIPTKAGLASSASGFAALTLALFRIYSIPEKSESLSRVA 153
F I S+ IP GL SSAS A+ Y+ K + ++++
Sbjct: 100 FKINISSKIPISCGLGSSASITIGTIKAVSGFYNKELKDDEIAKLG 145
>2a2c_A N-acetylgalactosamine kinase; galactokinase, , transferase;
HET: NG1 ADP; 1.65A {Homo sapiens} PDB: 2a2d_A*
(A:1-238,A:468-478)
Length = 249
Score = 34.6 bits (78), Expect = 0.023
Identities = 13/98 (13%), Positives = 22/98 (22%), Gaps = 6/98 (6%)
Query: 96 FCDLFRQFSKVYFLIETSNNIPTKAGLASSASGFAALTLALFRIYSIPEKSESLSRVARL 155
+ F + NIP +GL+SS++ L + L+ +
Sbjct: 138 IQEHFGLSNLTGMNCLVDGNIPPSSGLSSSSALVCCAGLVTLTVLGRNLSKVELAEICAK 197
Query: 156 ------GSGSACRSFYRGFCEWICGTDQNGMDSFAVPF 187
G E A
Sbjct: 198 SERYIGTEGGGMDQSISFLAEEGTAKLIEFSPLRATDV 235
>1h72_C HK, homoserine kinase; transferase, threonine biosynthesis;
HET: ANP; 1.8A {Methanococcus jannaschii}
(C:1-164,C:290-296)
Length = 171
Score = 34.3 bits (78), Expect = 0.024
Identities = 25/149 (16%), Positives = 48/149 (32%), Gaps = 17/149 (11%)
Query: 52 SLSLSLGHLGTITHITVIDSDADCIILNGQKISSQSS---FFKKTTQFCDLFRQFSKVYF 108
L L + + ID I ++ + I + + D F V
Sbjct: 20 VFGLCLKEPYDVIEVEAIDDKEIIIEVDDKNIPTDPDKNVAGIVAKKMIDDFNIGKGVKI 79
Query: 109 LIETSNNIPTKAGLASSASGFAALTLALFRIYSIPEKSESLSRVA----RLGSGSACR-- 162
I+ + +GL SSA+ A A+ ++ + L A SG+
Sbjct: 80 TIK--KGVKAGSGLGSSAASSAGTAYAINELFKLNLDKLKLVDYASYGELASSGAKHADN 137
Query: 163 ---SFYRGFCEWICGTDQNGMDSFAVPFN 188
+ + GF T+ ++ +P +
Sbjct: 138 VAPAIFGGFT---MVTNYEPLEVLHIPID 163
>1oj4_A 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase;
transferase, isoprenoids biosynthesis, GHMP kinase
superfamily transferase; HET: MSE CDM ANP; 2.01A
{Escherichia coli} (A:)
Length = 283
Score = 32.6 bits (73), Expect = 0.080
Identities = 35/277 (12%), Positives = 75/277 (27%), Gaps = 16/277 (5%)
Query: 23 KSSAFLPSNIALCKYW-GKRDSKLNLPLNNSLSLSLGHLGTITHIT--VIDSDADCIILN 79
++ P+ + L Y G+R + L G +I I +
Sbjct: 2 RTQWPSPAKLNLFLYITGQRADGYHTLQTLFQFLDYGDTISIELRDDGDIRLLTPVEGVE 61
Query: 80 GQKISSQSSFFKKTTQFCDLFRQFSKVYFLIETSNNIPTKAGLASSASGFAALTLALFRI 139
+ + D R + I +P GL +S A + +AL +
Sbjct: 62 HEDNLIVRAARLLXKTAADSGRLPTGSGANISIDKRLPXGGGLGGGSSNAATVLVALNHL 121
Query: 140 YSIPEKSESLSRVA-RLGSGSACRSFYRGFCEWICGTDQNGMDSFAVPFNNQWPDLRIGL 198
+ + L+ LG+ G +D + P + I
Sbjct: 122 WQCGLSXDELAEXGLTLGADVPVFVRGHAAFAEGVGEILTPVDPPEKWYLVAHPGVSIPT 181
Query: 199 LKIIDREKKIGSREAMEITRHHSPFFTQWTQQISTDLAHIKQAIIDQDFIKLGEVAEKNA 258
I + T + S D I + + + V
Sbjct: 182 -------PVIFKDPELPRNTPKRSIETLLKCEFSNDCEVIARKRFRE----VDAVLSW-L 229
Query: 259 LKMHATMIAASPPLLYWQKETIQGMERVWDARQQSIP 295
L+ + + + ++ + +T +V + + +
Sbjct: 230 LEYAPSRLTGTGACVFAEFDTESEARQVLEQAPEWLN 266
>3k17_A LIN0012 protein; protein structure initiative II(PSI II),
NYSGXRC, structural genomics, NEW YORK SGX research
center for structural genomics; HET: PGE; 2.10A
{Listeria innocua} (A:1-210,A:351-365)
Length = 225
Score = 32.2 bits (72), Expect = 0.11
Identities = 14/99 (14%), Positives = 27/99 (27%), Gaps = 13/99 (13%)
Query: 89 FFKKTTQFCDLFRQFSKVYFLIETSNNIPTKAGLASSASGFAALTLALFRIYSIPEKSES 148
+ + K E + K GL SSA+ A+ AL +
Sbjct: 84 IATTFLKSEGIELTPVKXVIETELIDQSGAKYGLGSSAAATVAVINALXTKFYPEISXLK 143
Query: 149 LSRVARLGSGSACRSFYRGFCEWICGTDQNGMDSFAVPF 187
++A L + + + D + +
Sbjct: 144 KFKLAALS-------------HLVVQGNGSCGDIASCXY 169
>2oi2_A Mevalonate kinase; enzyme-inhibitor complex, transferase;
HET: DP6; 2.50A {Streptococcus pneumoniae} (A:1-159)
Length = 159
Score = 31.2 bits (70), Expect = 0.23
Identities = 14/98 (14%), Positives = 25/98 (25%), Gaps = 3/98 (3%)
Query: 59 HLGTITHITVIDSDADCIILN-GQKISSQSSFFKKTTQFCDLFRQFSKVYFL--IETSNN 115
G + + + + + E +
Sbjct: 23 VYGYPAISLPLLEVEVTCKVVPAESPWRLYEEDTLSMAVYASLEYLNITEACIRCEIDSA 82
Query: 116 IPTKAGLASSASGFAALTLALFRIYSIPEKSESLSRVA 153
IP K G+ SSA+ A A+F Y + L +
Sbjct: 83 IPEKRGMGSSAAISIAAIRAVFDYYQADLPHDVLEILV 120
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
reductase, beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae} (A:1221-1330,A:1541-1688)
Length = 258
Score = 30.2 bits (68), Expect = 0.43
Identities = 18/87 (20%), Positives = 31/87 (35%), Gaps = 19/87 (21%)
Query: 210 SREAMEITRHHSPF----FTQWTQQISTDLAHIKQAIIDQDFIKLGEVAEKNALKMHATM 265
+RE ++ SP + + +Q+ T A IK E ALK+ A
Sbjct: 10 AREHHSSVKYASPNLNMKYRK--RQLVTREAQIKDW----------VENELEALKLEAEE 57
Query: 266 IAASPPLLYWQKETIQGMERVWDARQQ 292
I + + E + + +A Q
Sbjct: 58 IPSEDQNEFLL-ERTREIHN--EAESQ 81
>1pie_A Galactokinase; galactose, galactosemia, transferase; HET:
GLA; 2.10A {Lactococcus lactis} (A:1-232,A:410-419)
Length = 242
Score = 29.9 bits (66), Expect = 0.53
Identities = 12/56 (21%), Positives = 23/56 (41%), Gaps = 4/56 (7%)
Query: 110 IETSNNIPTKAGLASSASGFAALTLALFRIYSIP----EKSESLSRVARLGSGSAC 161
+ IPT +GL+SSAS + + L ++++ E + + G
Sbjct: 144 LLIKGEIPTASGLSSSASLELLVGVVLDDLFNLNVPRLELVQLGQKTENDYIGVNS 199
>1ksk_A Ribosomal small subunit pseudouridine synthase A; RSUA,
lyase; 2.00A {Escherichia coli} (A:59-234)
Length = 176
Score = 29.9 bits (66), Expect = 0.55
Identities = 14/150 (9%), Positives = 37/150 (24%), Gaps = 6/150 (4%)
Query: 120 AGLASSASGFAALTLALFRIYSIPEKSESLSRVARLGSGSACRSFYRGFCEWICGTDQNG 179
G S T+ F + K + R+ +G + + I +
Sbjct: 14 QGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLXTDDGQWSHRITSPRHHC 73
Query: 180 MDSF-AVPFNNQWPDLRIGLLKIIDREKKIGSREAMEITRHHSPFF-----TQWTQQIST 233
++ + D K + + + + Q+
Sbjct: 74 EKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTISEGRYHQVKR 133
Query: 234 DLAHIKQAIIDQDFIKLGEVAEKNALKMHA 263
A + +++ ++G + L
Sbjct: 134 XFAAVGNHVVELHRERIGGITLDADLAPGE 163
>3k85_A D-glycero-D-manno-heptose 1-phosphate kinase; bacteriodes
thetaiotaomicron, protein structure initiative II(PSI
II), nysgxrc; 2.28A {Bacteroides thetaiotaomicron}
(A:1-187,A:332-357)
Length = 213
Score = 29.1 bits (64), Expect = 1.0
Identities = 14/47 (29%), Positives = 22/47 (46%)
Query: 108 FLIETSNNIPTKAGLASSASGFAALTLALFRIYSIPEKSESLSRVAR 154
F I T N+ P +GL +S++ + A S+P SR+A
Sbjct: 99 FKITTYNDAPAGSGLGTSSTXVVCILKAFIEWLSLPLGDYETSRLAY 145
>2q7d_A Inositol-tetrakisphosphate 1-kinase; inositol kinase, ITPK1,
inositol 1,3,4- 5/6-kinase, inositol phosphate,
inositolphosphate, polyphosphate; HET: ANP; 1.60A {Homo
sapiens} PDB: 2qb5_A* 2odt_X (A:1-111)
Length = 111
Score = 27.5 bits (61), Expect = 2.7
Identities = 10/33 (30%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 301 DAGPNLKLLFTHKIEETIKQFFPEITIIDPLDS 333
D + L H+ +E I PE ++DPL +
Sbjct: 79 DQNDSQSLELVHRFQEYIDAH-PETIVLDPLPA 110
>2ppv_A Uncharacterized protein; NP_764104.1, structural genomics,
joint center for structural genomics, JCSG; 2.00A
{Staphylococcus epidermidis atcc 12228} (A:)
Length = 332
Score = 27.1 bits (60), Expect = 4.0
Identities = 12/75 (16%), Positives = 21/75 (28%), Gaps = 9/75 (12%)
Query: 151 RVARLGSGSACRSFYRGFCEW-------ICGTDQNGMDSFAVPFNN--QWPDLRIGLLKI 201
V +G G+ RG E+ + D G + D+R + +
Sbjct: 6 NVVLIGGGTGLSVLARGLREFPIDITAIVTVADNGGSTGKIRDVXDIPAPGDIRNVIAAL 65
Query: 202 IDREKKIGSREAMEI 216
D E +
Sbjct: 66 SDSESILTQLFQYRF 80
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin
domain, CUZ site, CUA site, oxidoreductase; 1.60A
{Paracoccus denitrificans} (A:45-81,A:463-595)
Length = 170
Score = 27.0 bits (59), Expect = 4.3
Identities = 5/16 (31%), Positives = 7/16 (43%)
Query: 165 YRGFCEWICGTDQNGM 180
Y +C+W C M
Sbjct: 144 YWYYCQWFCHALHMEM 159
>1qni_A Nitrous-oxide reductase; oxidoreductase, denitrification,
MAD, electron transfer; 2.40A {Pseudomonas nautica}
(A:453-581)
Length = 129
Score = 26.2 bits (57), Expect = 6.4
Identities = 5/16 (31%), Positives = 6/16 (37%)
Query: 165 YRGFCEWICGTDQNGM 180
Y +C W C M
Sbjct: 105 YWYYCNWFCHALHMEM 120
>1yud_A Hypothetical protein SO0799; SOR12, Q8E1N8, PSI, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.70A {Shewanella oneidensis mr-1}
(A:)
Length = 170
Score = 25.9 bits (57), Expect = 7.5
Identities = 8/41 (19%), Positives = 13/41 (31%)
Query: 275 WQKETIQGMERVWDARQQSIPIYFTLDAGPNLKLLFTHKIE 315
+ + + + +RQ IYF L G E
Sbjct: 31 FYRSSYRSETAFDPSRQLWSSIYFLLRTGEVSHFHRLTADE 71
Database: mmdb70
Posted date: Jun 20, 2010 3:12 AM
Number of letters in database: 4,956,049
Number of sequences in database: 33,805
Lambda K H
0.320 0.135 0.405
Gapped
Lambda K H
0.267 0.0683 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 2,620,721
Number of extensions: 112832
Number of successful extensions: 248
Number of sequences better than 10.0: 1
Number of HSP's gapped: 235
Number of HSP's successfully gapped: 39
Length of query: 355
Length of database: 4,956,049
Length adjustment: 89
Effective length of query: 266
Effective length of database: 1,947,404
Effective search space: 518009464
Effective search space used: 518009464
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.1 bits)