HHsearch alignment for GI: 254781017 and conserved domain: COG1685
>COG1685 Archaeal shikimate kinase [Amino acid transport and metabolism / Coenzyme metabolism].
Probab=99.77 E-value=1.5e-15 Score=117.50 Aligned_cols=266 Identities=19% Similarity=0.156 Sum_probs=167.7
Q ss_pred EECCEEEEEECCCEEECCCEEEEEEECCEEEEEEEECCCCEEEEEECCCCCCCCCCHHHCCCHHH-HHHHHHHHHCCCCC
Q ss_conf 97170499974353308942898776772899999868984999953644446566120150899-99999997187787
Q gi|254781017|r 10 VSAPGSLVLMGEHGVLHGHAALVFAINKRVILYLTLRKDRLINIDSSLGQYCGSLDLAMFHPSFS-FIIMAINHIKPSCG 88 (324)
Q Consensus 10 ~~aPGKv~L~GEh~v~~G~~ai~~aI~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~-~i~~~l~~~~~~~g 88 (324)
T Consensus 5 a~A~g~~TIiNAiatG~G---~AfgidL~v~a~v~~~~~~~~~~-------~~----~~d~~li~~~~~~v~e~~g~~~~ 70 (278)
T COG1685 5 ARAYGGGTIINAIATGKG---SAFGIDLKVEAEVRLSDEGKVRG-------EP----EGDTRLIERCVERVREKYGIPLG 70 (278)
T ss_pred EEECCCEEEEEEHHCCCC---CEEEECCEEEEEEEECCCCCCCC-------CC----CCCHHHHHHHHHHHHHHCCCCCC
T ss_conf 884276067530124766---25652445899999857653136-------77----78747999999999987298865
Q ss_pred EEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCC-H-HHHHHHCCCEEEEEECC
Q ss_conf 389998268753548874024566556777640456666014557888877652146887-5-44776629858998527
Q gi|254781017|r 89 FDLKVISQLDSQLGLGSSAAITVAITAALLTLQYHKEPSPDEILTTAHAIVLKVQGISSG-I-DLAASIHGGLICYQMPK 166 (324)
Q Consensus 89 ~~i~i~s~iP~g~GLGSSaa~~va~~~al~~~~~~~~~~~~~i~~lA~~~E~~~~g~~sG-~-D~~a~~~Gg~i~~~~~~ 166 (324)
T Consensus 71 ~~v~v~SeiP~~~GLkSSSA~~nAlv~A~~~~~-g~~~~~~~i~~l~a~~S~~aGvSvTGA~DDa~AS~~GG~~iTDN~~ 149 (278)
T COG1685 71 VEVEVESEIPVGSGLKSSSAASNALVKAVLKAL-GEEIDDFEILRLGARASKEAGVSVTGAFDDACASYLGGIVITDNRK 149 (278)
T ss_pred EEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHHCCCEEECCCHHHHHHHHCCEEEECCHH
T ss_conf 599982578766674245899999999999971-8988814888877798874594474140688999758868861611
Q ss_pred CEEEEE-ECC-CCCCEEECCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 515673-047-775267658417989999888998860823489999999840332078898730486445689999989
Q gi|254781017|r 167 YSIEKI-DFI-FPIHLIYSGYKTPTAQVLKKISYIEIEYPEINEINQKIYALMGKLSQISCQALRNKNLKVLAQAMNRQQ 244 (324)
Q Consensus 167 ~~~~~~-~~~-~~l~l~~tg~~~~T~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~al~~~d~~~l~~lm~~~~ 244 (324)
T Consensus 150 m~Ilrr~~~~~~~vlI~~p~~k~~~~~v--dv~~~r~~---------------a~~~e~A~~lA~~G~~~~---Am~lNG 209 (278)
T COG1685 150 MRILRRLDLPELTVLILAPGEKRLSANV--DVNRLRLI---------------APVVEEAFRLALKGEYFK---AMVLNG 209 (278)
T ss_pred HEEHHCCCCCCCEEEEEECCCCCCCCCC--CHHHHHHH---------------HHHHHHHHHHHHCCCHHH---HHHHHH
T ss_conf 1000003467740899816876525547--87898774---------------389999999985352888---888767
Q ss_pred HHH-HHHCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCC
Q ss_conf 999-8616787799999999997199459972689975489998466532689999999999779789994145456445
Q gi|254781017|r 245 GLL-ETLGVSDSKLSEIVWKLREQPHIMASKISGSGLGDCVIALGKGDLNSLPYQSVNCHMHAKGIDIVPITPSHSTSLY 323 (324)
Q Consensus 245 ~~L-~~lgvs~~~l~~li~~~~~~~g~~~aklsGAG~GG~~i~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 323 (324)
T Consensus 210 ~~y~~aLG~~~e~~----~~al-e~GA~~aglSGtGP--a~~Al~~~~------~~v~ea~~~~G~V~~t~~~~~~~~~~ 276 (278)
T COG1685 210 ILYCSALGYDLEPA----LKAL-EAGAAAAGLSGTGP--AYFALTEDP------EEVAEAWSKIGDVIETRNVGERARDY 276 (278)
T ss_pred HHHHHHHCCCHHHH----HHHH-HCCCCEECCCCCCC--CEEEEECCC------HHHHHHHHHCCEEEEEECCCCCCEEC
T ss_conf 99898708982899----9998-63540643578897--169995493------78999998678699980489874014