HHsearch alignment for GI: 254781017 and conserved domain: COG3407
>COG3407 MVD1 Mevalonate pyrophosphate decarboxylase [Lipid metabolism].
Probab=99.55 E-value=9.1e-12 Score=93.64 Aligned_cols=268 Identities=14% Similarity=0.090 Sum_probs=156.6
Q ss_pred EEEEECCEEEEEE--CCCEEEC----CCEEEEEEE-CCEEEEEEEEC---C-CCEEEEEECCCCCCCCCCHHHCCCHHHH
Q ss_conf 8999717049997--4353308----942898776-77289999986---8-9849999536444465661201508999
Q gi|254781017|r 7 KICVSAPGSLVLM--GEHGVLH----GHAALVFAI-NKRVILYLTLR---K-DRLINIDSSLGQYCGSLDLAMFHPSFSF 75 (324)
Q Consensus 7 ki~~~aPGKv~L~--GEh~v~~----G~~ai~~aI-~~~~~~~~~~~---~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~ 75 (324)
T Consensus 5 ~~t~~ay~nialIKywGk~D~~l~iP~~~SiS~t~~df~t~t~~~~~~~~~~~D~~~lNG-------~~~~-~~~~k~~~ 76 (329)
T COG3407 5 IITASAYPNIALIKYWGKRDEALNIPLNSSISVTLEDFSTTTTAEELTENDEEDTFILNG-------ELSE-DENEKARR 76 (329)
T ss_pred CEEEEECCHHHHHHHCCCCCHHHCCCCCCEEEEEECCCCCEEEEEEECCCCCCCEEEECC-------CCCC-HHHHHHHH
T ss_conf 513673523378776142316424778880478841444336778753788762799988-------2271-57899999
Q ss_pred HHHHHH-HHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHH
Q ss_conf 999999-7187787389998268753548874024566556777640456666014557888877652146887544776
Q gi|254781017|r 76 IIMAIN-HIKPSCGFDLKVISQLDSQLGLGSSAAITVAITAALLTLQYHKEPSPDEILTTAHAIVLKVQGISSGIDLAAS 154 (324)
Q Consensus 76 i~~~l~-~~~~~~g~~i~i~s~iP~g~GLGSSaa~~va~~~al~~~~~~~~~~~~~i~~lA~~~E~~~~g~~sG~D~~a~ 154 (324)
T Consensus 77 ~ld~~R~~~~~~~~~~i~s~n~~ptaaGLaSSaag~AAl~~Al~~~-~~~~~d~~~lS~~AR~g------SGSa---~RS 146 (329)
T COG3407 77 VLDRFRKEYGISFKVKIVSYNNFPTAAGLASSAAGAAALAAALNRL-YDLDLDDEFLSRIARLG------SGSA---SRS 146 (329)
T ss_pred HHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHH-HCCCCCHHHHHHHHHHH------CCCH---HHH
T ss_conf 9999987635466079997457876345210188999999999765-24478879999998775------2411---454
Q ss_pred HCCCEEEEEECCC------EEEEEECCCC---CCEE-ECCCCC-CHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHH
Q ss_conf 6298589985275------1567304777---5267-658417-989999888998860823489999999840332078
Q gi|254781017|r 155 IHGGLICYQMPKY------SIEKIDFIFP---IHLI-YSGYKT-PTAQVLKKISYIEIEYPEINEINQKIYALMGKLSQI 223 (324)
Q Consensus 155 ~~Gg~i~~~~~~~------~~~~~~~~~~---l~l~-~tg~~~-~T~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~i~~~ 223 (324)
T Consensus 147 ~~Gg~~~W~~~~g~~~~~~~~~~~~~~~e~~~i~~~~~~~~k~vsS~~gm~~---~~~tS~~y~~w~~~~~~----~~~~ 219 (329)
T COG3407 147 IFGGFVLWEKGEGEDSAAEQLFRLDLWKELAMIVLVISPKKKKVSSREGMQL---TAETSPFYDAWLEHSEE----DLEE 219 (329)
T ss_pred HCCCEEEECCCCCCCCCEEEECCCCCCCCCCEEEEEECCCCCCCCCHHHHHH---HHHCCHHHHHHHHHHHH----HHHH
T ss_conf 2288667306888752101202346762314279997455677873687777---77707278999998887----5999
Q ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHH--CCC------CHHHH---HHHHHHHHCCCCEEEECCCCCCCCEEEEEECCCC
Q ss_conf 898730486445689999989999861--678------77999---9999999719945997268997548999846653
Q gi|254781017|r 224 SCQALRNKNLKVLAQAMNRQQGLLETL--GVS------DSKLS---EIVWKLREQPHIMASKISGSGLGDCVIALGKGDL 292 (324)
Q Consensus 224 ~~~al~~~d~~~l~~lm~~~~~~L~~l--gvs------~~~l~---~li~~~~~~~g~~~aklsGAG~GG~~i~l~~~~~ 292 (324)
T Consensus 220 m~~~~~~~Df~~i~~~~e~dsl~mHA~l~~s~p~~~y~~~~s~~ii~~v~~~r~~g~-~~~fT~DaGP--nV~v~~~~~~ 296 (329)
T COG3407 220 MKEAIREKDFEKIGELAENDSLEMHATLMSSGPPFFYLTDESLRIIEFVHELRKEGN-AVYFTMDAGP--NVKVITLEEN 296 (329)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHCCC-CEEEEECCCC--CEEEEEECCC
T ss_conf 999986147999999998659999999845699639988318999999999873388-4699972799--6599972154
Q ss_pred CHHHHHHHHH
Q ss_conf 2689999999
Q gi|254781017|r 293 NSLPYQSVNC 302 (324)
Q Consensus 293 ~~~~~~~~~~ 302 (324)
T Consensus 297 l~~~~~~~~~ 306 (329)
T COG3407 297 LIDLLEILKT 306 (329)
T ss_pred HHHHHHHHHH
T ss_conf 8999998731