HHsearch alignment for GI: 254781017 and conserved domain: PRK00128
>PRK00128 ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional.
Probab=99.95 E-value=4e-25 Score=178.13 Aligned_cols=270 Identities=16% Similarity=0.156 Sum_probs=188.7
Q ss_pred EEEECCEEEEEEC----CCEE-ECCCEEEEEEECCEEEEEEEECCCCEEEEEECCCCCCCCCCHHHCCCHHHHHHHHHHH
Q ss_conf 9997170499974----3533-0894289877677289999986898499995364444656612015089999999997
Q gi|254781017|r 8 ICVSAPGSLVLMG----EHGV-LHGHAALVFAINKRVILYLTLRKDRLINIDSSLGQYCGSLDLAMFHPSFSFIIMAINH 82 (324)
Q Consensus 8 i~~~aPGKv~L~G----Eh~v-~~G~~ai~~aI~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~i~~~l~~ 82 (324)
T Consensus 1 ~~~kapAKINL~L~V~~kr~dGyH~l~sl~~~i~l~D~i~i~~~~~~~i~~~~~~~~~p~----~~~Nlv~ka~~~l~~~ 76 (281)
T PRK00128 1 ILEKAPAKINLSLDVLGKREDGYHEVEMIMTTIDLADRLEIEKLKEDKIVVESNSGYVPN----DERNLAYKAAKLLKER 76 (281)
T ss_pred CEEECCCCEECCEECCCCCCCCCCEEEEEEEEECCCCEEEEEECCCCCEEEEECCCCCCC----CCCCHHHHHHHHHHHH
T ss_conf 906214558344302883899988356899991687299999978998899978887888----9856999999999997
Q ss_pred HCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCEEEE
Q ss_conf 18778738999826875354887402456655677764045666601455788887765214688754477662985899
Q gi|254781017|r 83 IKPSCGFDLKVISQLDSQLGLGSSAAITVAITAALLTLQYHKEPSPDEILTTAHAIVLKVQGISSGIDLAASIHGGLICY 162 (324)
Q Consensus 83 ~~~~~g~~i~i~s~iP~g~GLGSSaa~~va~~~al~~~~~~~~~~~~~i~~lA~~~E~~~~g~~sG~D~~a~~~Gg~i~~ 162 (324)
T Consensus 77 ~~~~~~~~I~l~K~IP~gaGLGGGSSdAAa~L~~ln~l-~~~~ls~~eL~~la~~i---------GaDVpffl~g~~a~~ 146 (281)
T PRK00128 77 YNIKKGVRITIDKNIPVAAGLAGGSSDAAATLRGLNKL-WNLGLSLEELAEIGLKI---------GSDVPFCIYGGTALA 146 (281)
T ss_pred HCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHH-HCCCCCHHHHHHHHHHH---------CCCCCCHHCCCCEEE
T ss_conf 49998748999857986677785128899999999998-47999999999999872---------788441104775698
Q ss_pred EECCCEEEEEECC--CCCCEEECCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHH
Q ss_conf 8527515673047--77526765841798999988899886082348999999984033207889873048644568999
Q gi|254781017|r 163 QMPKYSIEKIDFI--FPIHLIYSGYKTPTAQVLKKISYIEIEYPEINEINQKIYALMGKLSQISCQALRNKNLKVLAQAM 240 (324)
Q Consensus 163 ~~~~~~~~~~~~~--~~l~l~~tg~~~~T~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~al~~~d~~~l~~lm 240 (324)
T Consensus 147 ~G~Ge~i~~l~~~~~~~~vLv~P~~~vsT~~vy~~~~~~~~~~~~---------------~~~~~~~l~~~d~~~~~~~l 211 (281)
T PRK00128 147 TGRGEKITPLKPPPSCWVVLAKPDIGVSTKDVYKNLDLDKIYHPD---------------TEKLIEAIENGDYQGICASM 211 (281)
T ss_pred ECCCCEEEECCCCCCCEEEEECCCCCCCHHHHHHHCCCCCCCCCC---------------HHHHHHHHHCCCHHHHHHHH
T ss_conf 558967678887888589998899997869999852800267877---------------68899988628999998863
Q ss_pred HHHHHHHHHHC-CCCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 99899998616-7877999999999971994599726899754899984665326899999999997797899941
Q gi|254781017|r 241 NRQQGLLETLG-VSDSKLSEIVWKLREQPHIMASKISGSGLGDCVIALGKGDLNSLPYQSVNCHMHAKGIDIVPIT 315 (324)
Q Consensus 241 ~~~~~~L~~lg-vs~~~l~~li~~~~~~~g~~~aklsGAG~GG~~i~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 315 (324)
T Consensus 212 ~---Ndle~~a~~~~P~i~~i~~~l~~-~Ga~~~~mSGSGs--t~Falf~~~~~A~---~~~~~Lk~~~~~~~~~~ 278 (281)
T PRK00128 212 G---NVLEPVTLKKHPEIAKIKERMLK-FGADGALMSGSGP--TVFGLFDDESRAQ---RIYNGLKGFCKEVYLVR 278 (281)
T ss_pred H---HHHHHHHHHHCHHHHHHHHHHHH-CCCCEEEEECCCC--EEEEEECCHHHHH---HHHHHHHHHCCCEEEEE
T ss_conf 4---03799999859599999999985-7998589877212--1899989999999---99998671489399997