HHsearch alignment for GI: 254781017 and conserved domain: PRK00343
>PRK00343 ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional.
Probab=99.89 E-value=1.1e-20 Score=149.96 Aligned_cols=257 Identities=16% Similarity=0.159 Sum_probs=172.4
Q ss_pred EEEEECCEEEEEE---------CCCEEECCCEEEEEEECCEEEEEEEECCCCEEEEEECCCCCCCCCCHHHCCCHHHHHH
Q ss_conf 8999717049997---------4353308942898776772899999868984999953644446566120150899999
Q gi|254781017|r 7 KICVSAPGSLVLM---------GEHGVLHGHAALVFAINKRVILYLTLRKDRLINIDSSLGQYCGSLDLAMFHPSFSFII 77 (324)
Q Consensus 7 ki~~~aPGKv~L~---------GEh~v~~G~~ai~~aI~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~i~ 77 (324)
T Consensus 2 ~~~~~aPAKINL~L~V~~kr~DGyH~i----~Sl~~~idl~D~i~i~~~~~~~i~~~~~~~~i~~-----~~Nlv~ka~~ 72 (279)
T PRK00343 2 LLDWPAPAKLNLFLHITGRRADGYHEL----QTLFQFLDYGDTLHFEPRDDGQIRLLTEIPGVPE-----EDNLIVRAAR 72 (279)
T ss_pred CCCCCCCEEEEECCCCCCCCCCCCCEE----EEEEEECCCCCEEEEEECCCCCEEEECCCCCCCC-----CCCHHHHHHH
T ss_conf 766365002730322387089998625----7899982788399999988996899468777986-----4759999999
Q ss_pred HHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHCC
Q ss_conf 99997187787389998268753548874024566556777640456666014557888877652146887544776629
Q gi|254781017|r 78 MAINHIKPSCGFDLKVISQLDSQLGLGSSAAITVAITAALLTLQYHKEPSPDEILTTAHAIVLKVQGISSGIDLAASIHG 157 (324)
Q Consensus 78 ~~l~~~~~~~g~~i~i~s~iP~g~GLGSSaa~~va~~~al~~~~~~~~~~~~~i~~lA~~~E~~~~g~~sG~D~~a~~~G 157 (324)
T Consensus 73 ~l~~~~~~~~~~~I~l~KnIPv~AGLGGGSSnAAa~L~~Ln~l-~~l~ls~~~l~~ia~~l---------GaDVPffl~~ 142 (279)
T PRK00343 73 LLQKATGTPLGADISLDKRLPMGGGLGGGSSDAATTLVALNRL-WQLGLSRDELAALGLKL---------GADVPVFVRG 142 (279)
T ss_pred HHHHHHCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHH-HCCCCCHHHHHHHHHHC---------CCCEEEEECC
T ss_conf 9999869999749999965876356788871289999999997-46678999999998751---------8977778608
Q ss_pred CEEEEEECCCEEEEEECC-CCCCEEECCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHH
Q ss_conf 858998527515673047-7752676584179899998889988608234899999998403320788987304864456
Q gi|254781017|r 158 GLICYQMPKYSIEKIDFI-FPIHLIYSGYKTPTAQVLKKISYIEIEYPEINEINQKIYALMGKLSQISCQALRNKNLKVL 236 (324)
Q Consensus 158 g~i~~~~~~~~~~~~~~~-~~l~l~~tg~~~~T~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~al~~~d~~~l 236 (324)
T Consensus 143 ~~a~~~G~Ge~l~~~~~~~~~~llv~P~~~vST~~vf~~~~l~-~~~~~-----~~~--------~~~~~~~~~NDLe~~ 208 (279)
T PRK00343 143 HAAFAEGVGEKLTPVELPEKWYLVVKPGVHVSTAEIFSDPELT-RDTPK-----RTI--------ADFLAGPGRNDCEPV 208 (279)
T ss_pred CCEEEEECCCEEEECCCCCCEEEEECCCCCCCHHHHHHCCCCC-CCCCC-----CCH--------HHHHHCHHCCCHHHH
T ss_conf 7689980686877756787479998799995619998382455-47730-----069--------999843121858999
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEEC
Q ss_conf 89999989999861678779999999999719945997268997548999846653268999999999977978999414
Q gi|254781017|r 237 AQAMNRQQGLLETLGVSDSKLSEIVWKLREQPHIMASKISGSGLGDCVIALGKGDLNSLPYQSVNCHMHAKGIDIVPITP 316 (324)
Q Consensus 237 ~~lm~~~~~~L~~lgvs~~~l~~li~~~~~~~g~~~aklsGAG~GG~~i~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 316 (324)
T Consensus 209 a~----------~---~~PeI~~~~~~L~~~-~--~~~MSGSGS--t~Fglf~~~~~A~---~a~~~l-~~~~~~f~~k~ 266 (279)
T PRK00343 209 VR----------K---RYPEVAQALSWLLEY-A--PARMTGTGA--CVFAEFDTEAEAE---AVLAQL-PEGWNGFVAKG 266 (279)
T ss_pred HH----------H---HCHHHHHHHHHHHHC-C--CCEEECCCC--EEEEEECCHHHHH---HHHHHC-CCCCCEEEECC
T ss_conf 98----------8---698999999998602-8--874654222--5889979999999---999864-74487899478
Q ss_pred CC
Q ss_conf 54
Q gi|254781017|r 317 SH 318 (324)
Q Consensus 317 ~~ 318 (324)
T Consensus 267 l~ 268 (279)
T PRK00343 267 LN 268 (279)
T ss_pred CC
T ss_conf 87