HHsearch results for GI: 254781017 and protein with PDBid: 1kvk_A
>1kvk_A MK, mevalonate kinase; RMK, ATP, GHMP, transferase; HET: ATP; 2.40A {Rattus norvegicus} SCOP: d.14.1.5 d.58.26.3 PDB: 2r42_A* 2r3v_A
Probab=100.00 E-value=0 Score=392.04 Aligned_cols=312 Identities=28% Similarity=0.338 Sum_probs=251.3
Q ss_pred CEEEEECCEEEEEECCCEEECCCEEEEEEECCEEEEEEEECCCCEEEEEECCCCCCCCCCHHH-----------------
Q ss_conf 789997170499974353308942898776772899999868984999953644446566120-----------------
Q gi|254781017|r 6 HKICVSAPGSLVLMGEHGVLHGHAALVFAINKRVILYLTLRKDRLINIDSSLGQYCGSLDLAM----------------- 68 (324)
Q Consensus 6 ~ki~~~aPGKv~L~GEh~v~~G~~ai~~aI~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~----------------- 68 (324)
+.+.|||||||+|+|||+||+|++||++|||+|+++.+++++++.+.+++.........+...
T Consensus 4 ~~~~vsAPGkv~L~GEH~d~~G~~vl~~AI~~~~~v~v~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (395)
T 1kvk_A 4 EVLLVSAPGKVILHGEHAVVHGKVALAVALNLRTFLVLRPQSNGKVSLNLPNVGIKQVWDVATLQLLDTGFLEQGDVPAP 83 (395)
T ss_dssp SCEEEEEEEEEEEECTTGGGGTCCEEEEEEEEEEEEEEEECSSSEEEEEETTTTEEEEEEHHHHHTSCC-----------
T ss_pred CEEEEEEEEEEEEEECCEEECCCCEEEEEECCCEEEEEEECCCCEEEEEECCCCCCCEECCCCCCCCCCCCCCCCCCCCC
T ss_conf 72999975599998177366699779999626589999998898799996688865121211000012343334566653
Q ss_pred ------------------CCC------HHHHHHHHH-HHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf ------------------150------899999999-9718778738999826875354887402456655677764045
Q gi|254781017|r 69 ------------------FHP------SFSFIIMAI-NHIKPSCGFDLKVISQLDSQLGLGSSAAITVAITAALLTLQYH 123 (324)
Q Consensus 69 ------------------~~~------~~~~i~~~l-~~~~~~~g~~i~i~s~iP~g~GLGSSaa~~va~~~al~~~~~~ 123 (324)
... .+..+...+ .......|+++.++|++|.|+|||||||++||++.|++.+. +
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~i~S~iP~g~GLgSSaA~~va~~~al~~~~-~ 162 (395)
T 1kvk_A 84 TLEQLEKLKKVAGLPRDCVGNEGLSLLAFLYLYLAICRKQRTLPSLDIMVWSELPPGAGLGSSAAYSVCVAAALLTAC-E 162 (395)
T ss_dssp -----CHHHHHHTSSCCCSCTTHHHHHHHHHHHHHHHTTSSSCCCEEEEEEESSCTTSSSCHHHHHHHHHHHHHHHHT-T
T ss_pred HHHHHHHHHHHCCCCHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHH-C
T ss_conf 056788765430462010121103678899999999853788888699996447732476512899999999999984-5
Q ss_pred CC---------------CCCHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCEEEEEECCCEEEEEECCCCCCEEECCCCCC
Q ss_conf 66---------------660145578888776521468875447766298589985275156730477752676584179
Q gi|254781017|r 124 KE---------------PSPDEILTTAHAIVLKVQGISSGIDLAASIHGGLICYQMPKYSIEKIDFIFPIHLIYSGYKTP 188 (324)
Q Consensus 124 ~~---------------~~~~~i~~lA~~~E~~~~g~~sG~D~~a~~~Gg~i~~~~~~~~~~~~~~~~~l~l~~tg~~~~ 188 (324)
.. .+.++++++|+.+|+.++|++||+|+.++.+|+.++++..+...........+++++|+.+++
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~i~~la~~~E~~~~g~~~G~d~~~~~~g~~~~~~~~~~~~~~~~~~~~l~l~~t~~~~~ 242 (395)
T 1kvk_A 163 EVTNPLKDRGSIGSWPEEDLKSINKWAYEGERVIHGNPSGVDNSVSTWGGALRYQQGKMSSLKRLPALQILLTNTKVPRS 242 (395)
T ss_dssp SSCCGGGGCCSEECCCHHHHHHHHHHHHHHHHHHHSSCCSHHHHHHHHCSEEEESSSCEEECSCCCCEEEEEEECCCCCC
T ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCEEEEECCCCCCCCCCCCCCEEEECCCCCCC
T ss_conf 44443100000011110479999999999998865888503577875588378512443234567652057832687650
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHH-------CCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
Q ss_conf 8999988899886082348999999984033207889873-------048644568999998999986167877999999
Q gi|254781017|r 189 TAQVLKKISYIEIEYPEINEINQKIYALMGKLSQISCQAL-------RNKNLKVLAQAMNRQQGLLETLGVSDSKLSEIV 261 (324)
Q Consensus 189 T~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~al-------~~~d~~~l~~lm~~~~~~L~~lgvs~~~l~~li 261 (324)
|++++..|...+.+++.. ...+.+.+..++.++.+++ ..+|++.||++|+++|..|+++++|+|++++++
T Consensus 243 t~~~~~~v~~~~~~~~~~---~~~~~~~~~~i~~~~~~~l~~~~~~~~~~d~~~lg~lm~~~~~~l~~l~vs~peld~l~ 319 (395)
T 1kvk_A 243 TKALVAGVRSRLIKFPEI---MAPLLTSIDAISLECERVLGEMAAAPVPEQYLVLEELMDMNQHHLNALGVGHASLDQLC 319 (395)
T ss_dssp HHHHHHHHHHHHHHSHHH---HHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf 278899999999864667---99999999999999999999887766511345589999980998876289989999999
Q ss_pred HHHHHCCCCEEEECCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEEC-CCCCCCC
Q ss_conf 9999719945997268997548999846653268999999999977978999414-5456445
Q gi|254781017|r 262 WKLREQPHIMASKISGSGLGDCVIALGKGDLNSLPYQSVNCHMHAKGIDIVPITP-SHSTSLY 323 (324)
Q Consensus 262 ~~~~~~~g~~~aklsGAG~GG~~i~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 323 (324)
+.+++. | +|+|+||||||||+++|++++..+++++.+.+++...|++.+.++. .+|..+|
T Consensus 320 ~~a~~~-g-~gaklsGAG~GG~~ial~~~~~~~~~~~~~~~~~~~~g~~~~~~~i~~~Gv~i~ 380 (395)
T 1kvk_A 320 QVTAAH-G-LHSKLTGAGGGGCGITLLKPGLERAKVEAAKQALTGCGFDCWETSIGAPGVSMH 380 (395)
T ss_dssp HHHHHT-T-CEEEECSSCSSSEEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEEESCCCSEEE
T ss_pred HHHHHC-C-CEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCEEEE
T ss_conf 999857-9-689983667756899997785049999999999997699699987289937995