Query gi|254781017|ref|YP_003065430.1| GHMP kinase [Candidatus Liberibacter asiaticus str. psy62] Match_columns 324 No_of_seqs 133 out of 2174 Neff 8.7 Searched_HMMs 23785 Date Tue May 31 23:48:08 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254781017.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 1kvk_A MK, mevalonate kinase; 100.0 0 0 392.0 31.9 312 6-323 4-380 (395) 2 2hfs_A Mevalonate kinase, puta 100.0 0 0 393.8 27.5 306 11-322 17-332 (332) 3 2x7i_A Mevalonate kinase; tran 100.0 0 0 384.7 25.6 297 2-311 1-300 (308) 4 2cz9_A Probable galactokinase; 100.0 0 0 375.3 31.6 311 8-322 2-350 (350) 5 3k17_A LIN0012 protein; protei 100.0 0 0 374.1 32.2 303 6-317 5-352 (365) 6 1pie_A Galactokinase; galactos 100.0 0 0 366.5 35.2 321 2-323 43-416 (419) 7 2oi2_A Mevalonate kinase; enzy 100.0 0 0 370.6 27.0 279 9-314 7-289 (292) 8 1wuu_A Galactokinase; galactos 100.0 0 0 364.7 31.0 319 2-323 32-397 (399) 9 2pg9_A Phosphomevalonate kinas 100.0 0 0 362.5 30.2 292 6-314 2-328 (337) 10 1kkh_A Mevalonate kinase; mixe 100.0 0 0 362.6 29.3 296 3-316 1-315 (317) 11 2a2c_A N-acetylgalactosamine k 100.0 0 0 357.2 32.9 319 2-323 51-475 (478) 12 3k85_A D-glycero-D-manno-hepto 100.0 0 0 363.4 18.3 303 5-317 1-332 (357) 13 2aj4_A Galactokinase; galactos 100.0 0 0 343.2 31.7 320 2-324 61-547 (548) 14 3hul_A HSK, HK, homoserine kin 100.0 4E-29 1.7E-33 202.1 23.8 283 7-324 2-290 (298) 15 1h72_C HK, homoserine kinase; 100.0 1.5E-28 6.2E-33 198.5 23.6 289 6-322 1-295 (296) 16 2v8p_A 4-diphosphocytidyl-2-C- 99.9 9.1E-24 3.8E-28 168.2 23.3 259 2-315 1-270 (271) 17 1uek_A 4-(cytidine 5'-diphosph 99.9 3.9E-21 1.6E-25 151.5 23.4 258 9-317 2-268 (275) 18 2hk2_A Diphosphomevalonate dec 99.9 3.8E-21 1.6E-25 151.6 19.5 299 1-322 2-329 (331) 19 2ww4_A 4-diphosphocytidyl-2C-m 99.9 6.8E-21 2.9E-25 150.0 19.4 260 9-318 4-274 (283) 20 2gs8_A Mevalonate pyrophosphat 99.9 3.1E-18 1.3E-22 133.2 25.8 284 5-322 6-317 (317) 21 3lto_A Mevalonate diphosphate 99.8 2.7E-16 1.1E-20 120.9 24.2 290 6-315 1-318 (323) 22 1fi4_A Mevalonate 5-diphosphat 99.7 1.3E-13 5.7E-18 103.8 26.2 281 2-305 18-348 (416) 23 3f0n_A Mevalonate pyrophosphat 99.6 2.3E-12 9.7E-17 96.0 22.1 277 2-304 18-344 (414) 24 2hke_A Diphosphomevalonate dec 99.5 7.2E-12 3E-16 92.9 21.5 269 6-303 4-317 (380) 25 3lu0_A DNA-directed RNA polyme 70.6 2.2 9.2E-05 20.3 2.5 100 178-277 202-320 (329) 26 3k4g_A DNA-directed RNA polyme 57.3 5.6 0.00024 17.7 2.5 59 219-277 18-77 (86) 27 1coo_A RNA polymerase alpha su 45.5 6.4 0.00027 17.3 1.3 59 219-277 30-89 (98) 28 1z3e_B DNA-directed RNA polyme 35.0 18 0.00075 14.5 3.1 50 219-268 15-65 (73) 29 2pv7_A T-protein [includes: ch 29.5 22 0.00093 13.9 4.5 30 220-249 247-276 (298) 30 3gfk_B DNA-directed RNA polyme 23.7 28 0.0012 13.3 1.6 50 219-268 22-72 (79) 31 2a6h_A DNA-directed RNA polyme 21.6 31 0.0013 13.0 3.0 47 220-266 261-308 (315) No 1 >1kvk_A MK, mevalonate kinase; RMK, ATP, GHMP, transferase; HET: ATP; 2.40A {Rattus norvegicus} SCOP: d.14.1.5 d.58.26.3 PDB: 2r42_A* 2r3v_A Probab=100.00 E-value=0 Score=392.04 Aligned_cols=312 Identities=28% Similarity=0.338 Sum_probs=251.3 Q ss_pred CEEEEECCEEEEEECCCEEECCCEEEEEEECCEEEEEEEECCCCEEEEEECCCCCCCCCCHHH----------------- Q ss_conf 789997170499974353308942898776772899999868984999953644446566120----------------- Q gi|254781017|r 6 HKICVSAPGSLVLMGEHGVLHGHAALVFAINKRVILYLTLRKDRLINIDSSLGQYCGSLDLAM----------------- 68 (324) Q Consensus 6 ~ki~~~aPGKv~L~GEh~v~~G~~ai~~aI~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~----------------- 68 (324) +.+.|||||||+|+|||+||+|++||++|||+|+++.+++++++.+.+++.........+... T Consensus 4 ~~~~vsAPGkv~L~GEH~d~~G~~vl~~AI~~~~~v~v~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (395) T 1kvk_A 4 EVLLVSAPGKVILHGEHAVVHGKVALAVALNLRTFLVLRPQSNGKVSLNLPNVGIKQVWDVATLQLLDTGFLEQGDVPAP 83 (395) T ss_dssp SCEEEEEEEEEEEECTTGGGGTCCEEEEEEEEEEEEEEEECSSSEEEEEETTTTEEEEEEHHHHHTSCC----------- T ss_pred CEEEEEEEEEEEEEECCEEECCCCEEEEEECCCEEEEEEECCCCEEEEEECCCCCCCEECCCCCCCCCCCCCCCCCCCCC T ss_conf 72999975599998177366699779999626589999998898799996688865121211000012343334566653 Q ss_pred ------------------CCC------HHHHHHHHH-HHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCC Q ss_conf ------------------150------899999999-9718778738999826875354887402456655677764045 Q gi|254781017|r 69 ------------------FHP------SFSFIIMAI-NHIKPSCGFDLKVISQLDSQLGLGSSAAITVAITAALLTLQYH 123 (324) Q Consensus 69 ------------------~~~------~~~~i~~~l-~~~~~~~g~~i~i~s~iP~g~GLGSSaa~~va~~~al~~~~~~ 123 (324) ... .+..+...+ .......|+++.++|++|.|+|||||||++||++.|++.+. + T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~i~S~iP~g~GLgSSaA~~va~~~al~~~~-~ 162 (395) T 1kvk_A 84 TLEQLEKLKKVAGLPRDCVGNEGLSLLAFLYLYLAICRKQRTLPSLDIMVWSELPPGAGLGSSAAYSVCVAAALLTAC-E 162 (395) T ss_dssp -----CHHHHHHTSSCCCSCTTHHHHHHHHHHHHHHHTTSSSCCCEEEEEEESSCTTSSSCHHHHHHHHHHHHHHHHT-T T ss_pred HHHHHHHHHHHCCCCHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHH-C T ss_conf 056788765430462010121103678899999999853788888699996447732476512899999999999984-5 Q ss_pred CC---------------CCCHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCEEEEEECCCEEEEEECCCCCCEEECCCCCC Q ss_conf 66---------------660145578888776521468875447766298589985275156730477752676584179 Q gi|254781017|r 124 KE---------------PSPDEILTTAHAIVLKVQGISSGIDLAASIHGGLICYQMPKYSIEKIDFIFPIHLIYSGYKTP 188 (324) Q Consensus 124 ~~---------------~~~~~i~~lA~~~E~~~~g~~sG~D~~a~~~Gg~i~~~~~~~~~~~~~~~~~l~l~~tg~~~~ 188 (324) .. .+.++++++|+.+|+.++|++||+|+.++.+|+.++++..+...........+++++|+.+++ T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~i~~la~~~E~~~~g~~~G~d~~~~~~g~~~~~~~~~~~~~~~~~~~~l~l~~t~~~~~ 242 (395) T 1kvk_A 163 EVTNPLKDRGSIGSWPEEDLKSINKWAYEGERVIHGNPSGVDNSVSTWGGALRYQQGKMSSLKRLPALQILLTNTKVPRS 242 (395) T ss_dssp SSCCGGGGCCSEECCCHHHHHHHHHHHHHHHHHHHSSCCSHHHHHHHHCSEEEESSSCEEECSCCCCEEEEEEECCCCCC T ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCEEEEECCCCCCCCCCCCCCEEEECCCCCCC T ss_conf 44443100000011110479999999999998865888503577875588378512443234567652057832687650 Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHH-------CCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHH Q ss_conf 8999988899886082348999999984033207889873-------048644568999998999986167877999999 Q gi|254781017|r 189 TAQVLKKISYIEIEYPEINEINQKIYALMGKLSQISCQAL-------RNKNLKVLAQAMNRQQGLLETLGVSDSKLSEIV 261 (324) Q Consensus 189 T~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~al-------~~~d~~~l~~lm~~~~~~L~~lgvs~~~l~~li 261 (324) |++++..|...+.+++.. ...+.+.+..++.++.+++ ..+|++.||++|+++|..|+++++|+|++++++ T Consensus 243 t~~~~~~v~~~~~~~~~~---~~~~~~~~~~i~~~~~~~l~~~~~~~~~~d~~~lg~lm~~~~~~l~~l~vs~peld~l~ 319 (395) T 1kvk_A 243 TKALVAGVRSRLIKFPEI---MAPLLTSIDAISLECERVLGEMAAAPVPEQYLVLEELMDMNQHHLNALGVGHASLDQLC 319 (395) T ss_dssp HHHHHHHHHHHHHHSHHH---HHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHH T ss_conf 278899999999864667---99999999999999999999887766511345589999980998876289989999999 Q ss_pred HHHHHCCCCEEEECCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEEC-CCCCCCC Q ss_conf 9999719945997268997548999846653268999999999977978999414-5456445 Q gi|254781017|r 262 WKLREQPHIMASKISGSGLGDCVIALGKGDLNSLPYQSVNCHMHAKGIDIVPITP-SHSTSLY 323 (324) Q Consensus 262 ~~~~~~~g~~~aklsGAG~GG~~i~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 323 (324) +.+++. | +|+|+||||||||+++|++++..+++++.+.+++...|++.+.++. .+|..+| T Consensus 320 ~~a~~~-g-~gaklsGAG~GG~~ial~~~~~~~~~~~~~~~~~~~~g~~~~~~~i~~~Gv~i~ 380 (395) T 1kvk_A 320 QVTAAH-G-LHSKLTGAGGGGCGITLLKPGLERAKVEAAKQALTGCGFDCWETSIGAPGVSMH 380 (395) T ss_dssp HHHHHT-T-CEEEECSSCSSSEEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEEESCCCSEEE T ss_pred HHHHHC-C-CEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCEEEE T ss_conf 999857-9-689983667756899997785049999999999997699699987289937995 No 2 >2hfs_A Mevalonate kinase, putative; GHMP kinase, trypanosomatid parasite, transferase; 1.75A {Leishmania major} PDB: 2hfu_A* Probab=100.00 E-value=0 Score=393.81 Aligned_cols=306 Identities=23% Similarity=0.305 Sum_probs=247.7 Q ss_pred ECCEEEEEECCCEEECCCEEEEEEECCEEEEEEEECCC-CEEEEEECCCCCCCCCCHHHCCCH---HHHHHHHHHHHCCC Q ss_conf 71704999743533089428987767728999998689-849999536444465661201508---99999999971877 Q gi|254781017|r 11 SAPGSLVLMGEHGVLHGHAALVFAINKRVILYLTLRKD-RLINIDSSLGQYCGSLDLAMFHPS---FSFIIMAINHIKPS 86 (324) Q Consensus 11 ~aPGKv~L~GEh~v~~G~~ai~~aI~~~~~~~~~~~~~-~~i~i~~~~~~~~~~~~~~~~~~~---~~~i~~~l~~~~~~ 86 (324) .|||||+|+|||+||||++||++|||+|++++++++++ ..+.++........... ..+... ...+...+....+. T Consensus 17 ~~~GKv~L~GEhavv~G~~al~~AI~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~ 95 (332) T 2hfs_A 17 IGYGKVILFGEHFVVHGAEAIVAGISEYTECRLEINPGVPGLQVDDQRPAIPGYIA-QKRDEQIKAHQLVLDHLKVDLSG 95 (332) T ss_dssp EEEEEEEEECTTGGGGTCCEEEEEEEEEEEEEEEEETTCCSEEEEECCCCCTTHHH-HHHHHHHHHHHHHHHHTTBCCSS T ss_pred EEEEEEEEEECCEEECCCCEEEEEEECCEEEEEEECCCCCCEEEECCCCCCCCCCC-CCCHHHHHHHHHHHHHHHCCCCC T ss_conf 65369999935712359768999930707999998689985697457766754312-23336779999999997313789 Q ss_pred CCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCEEEEEECC Q ss_conf 87389998268753548874024566556777640456666014557888877652146887544776629858998527 Q gi|254781017|r 87 CGFDLKVISQLDSQLGLGSSAAITVAITAALLTLQYHKEPSPDEILTTAHAIVLKVQGISSGIDLAASIHGGLICYQMPK 166 (324) Q Consensus 87 ~g~~i~i~s~iP~g~GLGSSaa~~va~~~al~~~~~~~~~~~~~i~~lA~~~E~~~~g~~sG~D~~a~~~Gg~i~~~~~~ 166 (324) .|++|.++|+||.|+|||||||++||++.|++.+ ++.++++++++++|+.+|+.+||++||+|+++|+|||+++|++.+ T Consensus 96 ~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~~-~~~~ls~~el~~~A~~~E~~~~g~~sG~D~~as~~Gg~~~~~~~~ 174 (332) T 2hfs_A 96 DGLKMFIGGPLVPSSGIGASASDVVAFSRALSEL-YQLNLTDEEVNLSAFVGEGGYHGTPSGADNTAATYGGLILYRRQN 174 (332) T ss_dssp SEEEEEEECSCCCCTTSCHHHHHHHHHHHHHHHH-HTCCCCHHHHHHHHHHHGGGSSSCCCSHHHHHHHHCEEEEEEECS T ss_pred CCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHH-HHHCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEECC T ss_conf 9879999479987778660889999999999877-750589999999999998751589876437899769869999579 Q ss_pred CE--EEEEECC--CCCCEEECCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHH Q ss_conf 51--5673047--7752676584179899998889988608234899999998403320788987304864456899999 Q gi|254781017|r 167 YS--IEKIDFI--FPIHLIYSGYKTPTAQVLKKISYIEIEYPEINEINQKIYALMGKLSQISCQALRNKNLKVLAQAMNR 242 (324) Q Consensus 167 ~~--~~~~~~~--~~l~l~~tg~~~~T~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~al~~~d~~~l~~lm~~ 242 (324) .. ..+++++ ..+++++++.+++|+++++.++..+.+.+. ....+.+.+.++++++.++++.+|++.|+++|++ T Consensus 175 ~~~~~~~~~~~~~~~l~l~~tg~~~~T~~~~~~~~~~~~~~~~---~~~~~~~~i~~i~~~~~~al~~~~~~~lg~lm~~ 251 (332) T 2hfs_A 175 GKSVFKPIAFQQRLYLVVVGTGINASTAKVVNDVHKMKQQQPV---QFKRLYDNYTHIVSQAREALQKGDLQRLGQLMNA 251 (332) T ss_dssp SSEEEEEECCCSCEEEEEEECSCCCCHHHHHHHHHHHHHHCHH---HHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH T ss_pred CCEEEEECCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 9579998455551479998189762249999764455553427---7776666789999999987750004567899999 Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEEECCCCC-HHHHHHHHHHHHHCCC-EEEEEECCCCC Q ss_conf 899998616787799999999997199459972689975489998466532-6899999999997797-89994145456 Q gi|254781017|r 243 QQGLLETLGVSDSKLSEIVWKLREQPHIMASKISGSGLGDCVIALGKGDLN-SLPYQSVNCHMHAKGI-DIVPITPSHST 320 (324) Q Consensus 243 ~~~~L~~lgvs~~~l~~li~~~~~~~g~~~aklsGAG~GG~~i~l~~~~~~-~~~~~~~~~~~~~~g~-~~~~~~~~~~~ 320 (324) +|.+|++++||+|+++++++.+++ .|++|+|+||||+|||+++|++++.. ....+.+++.+.+.+| +.+.++|+.|. T Consensus 252 ~~~~l~~l~vs~p~l~~l~~~a~~-~GalgaklsGaG~Gg~~ial~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~p~~g~ 330 (332) T 2hfs_A 252 NHDLCRQIDVSCRELESIVQTCRT-YGALGAKLSGTGRGGIAVALAASSDQRDAIVKGLKAKCPEAKFIWRYTVQPSAAS 330 (332) T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHH-TTCSEEEEESSCSSSEEEEEESSHHHHHHHHHHHHHHCTTCCEEEEEEECCSCC- T ss_pred HHHHHHHCCCCCHHHHHHHHHHHH-CCCCEEEECCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCC T ss_conf 999998538998899999999997-8994899927898664999987878899999999998886598258997678778 Q ss_pred CC Q ss_conf 44 Q gi|254781017|r 321 SL 322 (324) Q Consensus 321 ~~ 322 (324) +| T Consensus 331 ~i 332 (332) T 2hfs_A 331 NL 332 (332) T ss_dssp -- T ss_pred CC T ss_conf 89 No 3 >2x7i_A Mevalonate kinase; transferase; HET: CIT; 2.20A {Staphylococcus aureus} Probab=100.00 E-value=0 Score=384.68 Aligned_cols=297 Identities=21% Similarity=0.267 Sum_probs=238.3 Q ss_pred CCCCCEEEEECCEEEEEECCCEEECCCEEEEEEECC-EEEEEEEECCCCEEE-EEECCCCCCCCCCHHHCCCHHHHHHHH Q ss_conf 988878999717049997435330894289877677-289999986898499-995364444656612015089999999 Q gi|254781017|r 2 GQCLHKICVSAPGSLVLMGEHGVLHGHAALVFAINK-RVILYLTLRKDRLIN-IDSSLGQYCGSLDLAMFHPSFSFIIMA 79 (324) Q Consensus 2 ~~~~~ki~~~aPGKv~L~GEh~v~~G~~ai~~aI~~-~~~~~~~~~~~~~i~-i~~~~~~~~~~~~~~~~~~~~~~i~~~ 79 (324) |--+++.+.||||||+|+|||+||||++||++|||+ +++++++..++..+. +.....+.. ..+..+.....+... T Consensus 1 ~~~~~~~~~~ApGKv~L~GEhavv~G~~ala~aI~~~~~~~~i~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 77 (308) T 2x7i_A 1 GAMTRKGYGESTGKIILIGEHAVTFGEPAIAVPFNAGKIKVLIEALESGNYSSIKSDVYDGM---LYDAPDHLKSLVNRF 77 (308) T ss_dssp ---CCEEEEEEEEEEEEEEBTTCCTTSCEEEEEEEEEEEEEEEEECCTTCCCEEEEEECSSC---CCCTTSCHHHHHHHH T ss_pred CCCCCCEEEEEEEEEEEEECCEEECCCCEEEEEEECCEEEEEEEECCCCCEEEEECCCCCCC---CCCCHHHHHHHHHHH T ss_conf 99886389998038999967777659978999985788999999847897256425544565---444427999999999 Q ss_pred HHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCE Q ss_conf 99718778738999826875354887402456655677764045666601455788887765214688754477662985 Q gi|254781017|r 80 INHIKPSCGFDLKVISQLDSQLGLGSSAAITVAITAALLTLQYHKEPSPDEILTTAHAIVLKVQGISSGIDLAASIHGGL 159 (324) Q Consensus 80 l~~~~~~~g~~i~i~s~iP~g~GLGSSaa~~va~~~al~~~~~~~~~~~~~i~~lA~~~E~~~~g~~sG~D~~a~~~Gg~ 159 (324) .+.+....|+++.++|++|.++|||||||++||++.+++.+ ++.++++++++++|+.+|+.+||++||+|++++++||+ T Consensus 78 ~~~~~~~~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~~-~~~~ls~~el~~la~~~E~~~~g~~sG~D~~~~~~gg~ 156 (308) T 2x7i_A 78 VELNNITEPLAVTIQTNLPPSRGLGSSAAVAVAFVRASYDF-LGKSLTKEELIEKANWAEQIAHGKPSGIDTQTIVSGKP 156 (308) T ss_dssp HHHTTCCSCEEEEEEECCCTTSSSCHHHHHHHHHHHHHHHH-HTCCCCHHHHHHHHHHHHHHHHSSCCHHHHHHHHHTSC T ss_pred HHHCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCE T ss_conf 99649998859999478986578784178899999999985-17886689999998888876337887563376651250 Q ss_pred EEEEECCC-EEEEEECCCCCCEEECCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHH Q ss_conf 89985275-15673047775267658417989999888998860823489999999840332078898730486445689 Q gi|254781017|r 160 ICYQMPKY-SIEKIDFIFPIHLIYSGYKTPTAQVLKKISYIEIEYPEINEINQKIYALMGKLSQISCQALRNKNLKVLAQ 238 (324) Q Consensus 160 i~~~~~~~-~~~~~~~~~~l~l~~tg~~~~T~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~al~~~d~~~l~~ 238 (324) ++|+.... ....++++..+++++|+.+++|+++++.|++.... +... ..++.+.++++++.++|+++|++.|++ T Consensus 157 i~~~~~~~~~~~~~~~~~~~~l~~tg~~~~T~~~~~~v~~~~~~-~~~~----~~~~~i~~~~~~~~~al~~~d~~~lg~ 231 (308) T 2x7i_A 157 VWFQKGHAETLKTLSLDGYMVVIDTGVKGSTRQAVHDVHKLCED-PQYM----SHVKHIGKLVLRASDVIEHHKFEALAD 231 (308) T ss_dssp EEEETTEEEECSCCCBSSEEEEEECCC--CCSCCCC---------CCHH----HHHHHHHHHHHHHHHHHHTTCHHHHHH T ss_pred EEECCCCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHCC-HHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 67327875321001334304651589764069999999997406-0667----999997478999999998657789999 Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCEE Q ss_conf 9999899998616787799999999997199459972689975489998466532689999999999779789 Q gi|254781017|r 239 AMNRQQGLLETLGVSDSKLSEIVWKLREQPHIMASKISGSGLGDCVIALGKGDLNSLPYQSVNCHMHAKGIDI 311 (324) Q Consensus 239 lm~~~~~~L~~lgvs~~~l~~li~~~~~~~g~~~aklsGAG~GG~~i~l~~~~~~~~~~~~~~~~~~~~g~~~ 311 (324) +|+++|..|++++||+|+++++++.+++ .|++|+|+||||+|||+++|+++... .+.+.+.|.+.|+.- T Consensus 232 lm~~~~~~l~~l~vs~p~l~~l~~~~~~-~Ga~gaklsGaG~Gg~~~al~~~~~~---a~~i~~~l~~~g~~~ 300 (308) T 2x7i_A 232 IFNECHADLKALTVSHDKIEQLMKIGKE-NGAIAGKLTGAGRGGSMLLLAKDLPT---AKNIVKAVEKAGAAH 300 (308) T ss_dssp HHHHHHHHHHHHSCCCHHHHHHHHHHHH-TTCSEEEESBTTTCSSEEEEESSHHH---HHHHHHHHHHTTCSE T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHH-CCCCEEEEECCCCCCEEEEEECCHHH---HHHHHHHHHHCCCCE T ss_conf 9999999998717898899999999997-89958999777852269999798789---999999999769957 No 4 >2cz9_A Probable galactokinase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.50A {Pyrococcus horikoshii} PDB: 2dei_A* 2dej_A* 1s4e_A* Probab=100.00 E-value=0 Score=375.26 Aligned_cols=311 Identities=19% Similarity=0.172 Sum_probs=233.7 Q ss_pred EEEECCEEEEEECCCEEECCCEEEEEEECCEEEEEEEECCCCEEEEEECCCCCCCCCC------HHHCCCHHHHHHHHHH Q ss_conf 9997170499974353308942898776772899999868984999953644446566------1201508999999999 Q gi|254781017|r 8 ICVSAPGSLVLMGEHGVLHGHAALVFAINKRVILYLTLRKDRLINIDSSLGQYCGSLD------LAMFHPSFSFIIMAIN 81 (324) Q Consensus 8 i~~~aPGKv~L~GEh~v~~G~~ai~~aI~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~------~~~~~~~~~~i~~~l~ 81 (324) |.+||||||+|||||+||+|++||++|||+|++++++++++ +.+.+.........+ ...|...+..++..+. T Consensus 2 i~v~APgrv~L~GeH~d~~gg~vi~~AI~~~~~v~~~~~~~--~~i~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (350) T 2cz9_A 2 IKVKSPGRVNLIGEHTDYTYGYVMPMAINLYTKIEAEKHGE--VILYSEHFGEERKFSLNDLRKENSWIDYVKGIFWVLK 79 (350) T ss_dssp EEEEEEEEEEEECTTCGGGTCEEEEEEEEEEEEEEEEEESS--EEEEETTTTEEEEECTTCCCCCSSTHHHHHHHHHHHH T ss_pred EEEECCEEEEEEECCEEECCCEEEEEEECCCEEEEEEECCC--EEEEECCCCCCEEEECCCCCCCCCHHHHHHHHHHHHH T ss_conf 89991788994758876689757967840519999998895--7999778897379975202456868999999999999 Q ss_pred H-HCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCC-HHHHHHHCCC- Q ss_conf 7-187787389998268753548874024566556777640456666014557888877652146887-5447766298- Q gi|254781017|r 82 H-IKPSCGFDLKVISQLDSQLGLGSSAAITVAITAALLTLQYHKEPSPDEILTTAHAIVLKVQGISSG-IDLAASIHGG- 158 (324) Q Consensus 82 ~-~~~~~g~~i~i~s~iP~g~GLGSSaa~~va~~~al~~~~~~~~~~~~~i~~lA~~~E~~~~g~~sG-~D~~a~~~Gg- 158 (324) . ..+..|+++.++|++|.|+|||||||++||++.|++.+ ++.++++.+++++|+.+|..++|.+|| +||+++++|+ T Consensus 80 ~~~~~~~G~~i~i~S~iP~gsGLgSSAA~~va~~~al~~~-~~~~l~~~~l~~~a~~~E~~~~g~~~G~~D~~a~~~G~~ 158 (350) T 2cz9_A 80 ESDYEVGGIKGRVSGNLPLGAGLSSSASFEVGILETLDKL-YNLKLDSLSKVLLAKKAENEFVGVPCGILDQFAVVFGRE 158 (350) T ss_dssp HTTCCCCEEEEEEECSCCTTSSSCHHHHHHHHHHHHHHHH-TTCCCCHHHHHHHHHHHHHHTTCCCCCSHHHHHHHHCCT T ss_pred HCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCC T ss_conf 7088888869999578888877440899999999999986-078887699999999999976089987005899865877 Q ss_pred --EEEEEECCCEEEEEECC--CCCCEEECCCCCCHHHHHHHHHHHH------------------HHCCCHHHHHHHHHHH Q ss_conf --58998527515673047--7752676584179899998889988------------------6082348999999984 Q gi|254781017|r 159 --LICYQMPKYSIEKIDFI--FPIHLIYSGYKTPTAQVLKKISYIE------------------IEYPEINEINQKIYAL 216 (324) Q Consensus 159 --~i~~~~~~~~~~~~~~~--~~l~l~~tg~~~~T~~~v~~v~~~~------------------~~~~~~~~~~~~~~~~ 216 (324) +++++.+....+.++++ ..+++++|+.++.|......++... .......+........ T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~sg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (350) T 2cz9_A 159 GNVIFLDTHTLDYEYIPFPKDVSILVFYTGVRRELASSEYAERKHIAEESLKILGKGSSKEVREGELSKLPPLHRKFFGY 238 (350) T ss_dssp TEEEEEETTTCCEEEEECCTTEEEEEEECSCC----CHHHHHHHHHHHHHHHHHTCSCGGGCCGGGGGGSCHHHHHHHHH T ss_pred CEEEECCCCCCEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH T ss_conf 76997127986079974588726899844740111045789999999999987632036889998877777999999999 Q ss_pred ---HCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHH-HHCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEEECCCC Q ss_conf ---03320788987304864456899999899998-61678779999999999719945997268997548999846653 Q gi|254781017|r 217 ---MGKLSQISCQALRNKNLKVLAQAMNRQQGLLE-TLGVSDSKLSEIVWKLREQPHIMASKISGSGLGDCVIALGKGDL 292 (324) Q Consensus 217 ---~~~i~~~~~~al~~~d~~~l~~lm~~~~~~L~-~lgvs~~~l~~li~~~~~~~g~~~aklsGAG~GG~~i~l~~~~~ 292 (324) ....+.++.++++++|++.+|++|+++|+.|+ .+++|+|++|++++.+++ .|++|+|+||||+|||+++|++++. T Consensus 239 v~~e~~~~~~~~~~~~~~d~~~~g~lm~~~~~~L~~~~~vs~~~ld~lv~~a~~-~Ga~GaKltGAG~GGc~iaL~~~~~ 317 (350) T 2cz9_A 239 IVRENARVLEVRDALKEGNVEEVGKILTTAHWDLAKNYEVSCKELDFFVERALK-LGAYGARLTGAGFGGSAIALVDKED 317 (350) T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH-TTCSEEEECSSCSSSEEEEEEEGGG T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH-CCCCEEEEECCCCCEEEEEEECHHH T ss_conf 999999999999875027899999999999999987208996899999999997-7993899823788729999977778 Q ss_pred CHHHHHHHHHHH-HHCCCE--EEEEECCCCCCC Q ss_conf 268999999999-977978--999414545644 Q gi|254781017|r 293 NSLPYQSVNCHM-HAKGID--IVPITPSHSTSL 322 (324) Q Consensus 293 ~~~~~~~~~~~~-~~~g~~--~~~~~~~~~~~~ 322 (324) .+.+++.+.+.. .+.++. .+.+.|++|++| T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~i 350 (350) T 2cz9_A 318 AETIGEEILREYLKRFPWKARHFIVEPSDGVGI 350 (350) T ss_dssp HHHHHHHHHHHHHHHCCSCCEEEEECEECCSBC T ss_pred HHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCC T ss_conf 999999999999985299876899836898839 No 5 >3k17_A LIN0012 protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics, NEW YORK SGX research center for structural genomics; HET: PGE; 2.10A {Listeria innocua} Probab=100.00 E-value=0 Score=374.08 Aligned_cols=303 Identities=24% Similarity=0.290 Sum_probs=244.0 Q ss_pred CEEEEECCEEEEEECCCEEEC-CCEEEEEEECCEEEEEEEECCCCEEEEEECCCCCCCCCCH-----HHCCC----HHHH Q ss_conf 789997170499974353308-9428987767728999998689849999536444465661-----20150----8999 Q gi|254781017|r 6 HKICVSAPGSLVLMGEHGVLH-GHAALVFAINKRVILYLTLRKDRLINIDSSLGQYCGSLDL-----AMFHP----SFSF 75 (324) Q Consensus 6 ~ki~~~aPGKv~L~GEh~v~~-G~~ai~~aI~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~-----~~~~~----~~~~ 75 (324) +||.+||||||+|+|||+||+ |++||++|||+|+++++++++++.+.+.+...+.....+. ..+.+ .+.. T Consensus 5 ~~i~v~aPGKv~L~GEh~v~~~G~~al~~AI~~~~~v~i~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (365) T 3k17_A 5 NKLQVKIPGKLYVAGEYAVVESGHTAILTAVNRYITLTLEDSERNELWIPHYENPVSWPIGGELKPDGEHWTFTAEAINI 84 (365) T ss_dssp CCEEEEEEEEEEEECTTGGGSTTCEEEEEEEEEEEEEEEEECSSCEEECTTCSSCBCCCTTSCCCCSCGGGHHHHHHHHH T ss_pred CEEEEEEEEEEEEEECCEEECCCCEEEEEEECCEEEEEEEECCCCEEEEEECCCCEEEEECCCCCCCCCCHHHHHHHHHH T ss_conf 87999996599999868981599669999981509999999899879999668870588536556666511689999999 Q ss_pred HHHHHHHHC-CCCCEEEEEECCCC----CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCHH Q ss_conf 999999718-77873899982687----5354887402456655677764045666601455788887765214688754 Q gi|254781017|r 76 IIMAINHIK-PSCGFDLKVISQLD----SQLGLGSSAAITVAITAALLTLQYHKEPSPDEILTTAHAIVLKVQGISSGID 150 (324) Q Consensus 76 i~~~l~~~~-~~~g~~i~i~s~iP----~g~GLGSSaa~~va~~~al~~~~~~~~~~~~~i~~lA~~~E~~~~g~~sG~D 150 (324) +...+.... ...|+++.|+|++| .|+|||||||++||++.|++.+ ++..+++.+++++|+.+|+.++|.+||+| T Consensus 85 ~~~~l~~~~~~~~g~~i~i~s~ip~~~g~gsGLgSSaA~~va~~~al~~~-~~~~~~~~~l~~~a~~~E~~~~g~~sG~D 163 (365) T 3k17_A 85 ATTFLKSEGIELTPVKMVIETELIDQSGAKYGLGSSAAATVAVINALMTK-FYPEISMLKKFKLAALSHLVVQGNGSCGD 163 (365) T ss_dssp HHHHHHHTTCCCCCEEEEEEESSBCTTSCBCSSCHHHHHHHHHHHHHHHH-HCTTSCHHHHHHHHHHHHHHHHSSCCSHH T ss_pred HHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHHHCCCCCHHH T ss_conf 99999980999898359998752688886764679999999999999985-05432178888999999987446986021 Q ss_pred HHHHHCCCEEEEEECCCE-----------------------EEEEE-CCCCCCEEECCCCCCHHHHHHHHHHHHHHCCCH Q ss_conf 477662985899852751-----------------------56730-477752676584179899998889988608234 Q gi|254781017|r 151 LAASIHGGLICYQMPKYS-----------------------IEKID-FIFPIHLIYSGYKTPTAQVLKKISYIEIEYPEI 206 (324) Q Consensus 151 ~~a~~~Gg~i~~~~~~~~-----------------------~~~~~-~~~~l~l~~tg~~~~T~~~v~~v~~~~~~~~~~ 206 (324) +++|+|||++.|+..+.. +..++ ....+++++|+.+++|+++++.|...+.+.+. T Consensus 164 ~~~s~~GG~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~tg~~~~t~~~v~~v~~~~~~~~~- 242 (365) T 3k17_A 164 IASCMYGGWIAYTTFDQEWVKHRLAYKSLEWFMKEPWPMLQIETLEEPVPTFSVGWTGTPVSTGKLVSQIHAFKQEDSK- 242 (365) T ss_dssp HHHHHHCSEEEEECCCHHHHHHHHTTSCHHHHHHSCCTTCEEEEECCCSSEEEEEECSCCCCHHHHHHHHHHHHHHCHH- T ss_pred HHHHHCCCEEEEEECCCCCEEEECCCCCCCEEECCCCCHHHHHHHHHHHHCEEEEECCCCCCHHHHHHHHHHHHHHCHH- T ss_conf 4888739839998178401022113466302323786235577654134200675169964439999999986542648- Q ss_pred HHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHH------HCCCCHHHHHHHHHHHHCCCCEEEECCCCCC Q ss_conf 8999999984033207889873048644568999998999986------1678779999999999719945997268997 Q gi|254781017|r 207 NEINQKIYALMGKLSQISCQALRNKNLKVLAQAMNRQQGLLET------LGVSDSKLSEIVWKLREQPHIMASKISGSGL 280 (324) Q Consensus 207 ~~~~~~~~~~~~~i~~~~~~al~~~d~~~l~~lm~~~~~~L~~------lgvs~~~l~~li~~~~~~~g~~~aklsGAG~ 280 (324) ....+...+.+++.++.++|+++|++.|+++|+++|..|++ +++|+|+++++++.+.+. |+ ++|+||||| T Consensus 243 --~~~~~~~~~~~~~~~~~~aL~~~d~~~~g~lm~~~~~~l~~~~~~~~~~vs~~~l~~lv~~a~~~-g~-~ak~tGAG~ 318 (365) T 3k17_A 243 --NYQHFLTRNNEIMKQIIQAFHTKDEELLYSSIKENRRILQELGTKAGVNIETSLLKELADSAENM-GG-AGKSSGSGG 318 (365) T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHTCCCSCHHHHHHHHHHHHT-TS-EEEECTTCS T ss_pred --HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHC-CE-EEEECCCCC T ss_conf --77657888878899999976316899999999999999996222158765899999999999867-90-899846065 Q ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEECC Q ss_conf 5489998466532689999999999779789994145 Q gi|254781017|r 281 GDCVIALGKGDLNSLPYQSVNCHMHAKGIDIVPITPS 317 (324) Q Consensus 281 GG~~i~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 317 (324) |||+++|++++. ..+++.++|.+.|+..+++.+. T Consensus 319 Ggc~~al~~~~~---~~~~l~~~~~~~g~~~l~~~~~ 352 (365) T 3k17_A 319 GDCGIAFSKTKE---LAEKLVNEWEKLGIKHLPFHTG 352 (365) T ss_dssp SSEEEEEESSHH---HHHHHHHHHHHTTCEECCCCBC T ss_pred CCEEEEEECCHH---HHHHHHHHHHHCCCEEEEEEEC T ss_conf 058999988889---9999999999879976212640 No 6 >1pie_A Galactokinase; galactose, galactosemia, transferase; HET: GLA; 2.10A {Lactococcus lactis} SCOP: d.14.1.5 d.58.26.7 Probab=100.00 E-value=0 Score=366.54 Aligned_cols=321 Identities=18% Similarity=0.242 Sum_probs=245.7 Q ss_pred CCCCCEEEEECCEEEEEECCCEEECCCEEEEEEECCEEEEEEEECCCCEEEEEECCCCCCCC----CC------HHHCCC Q ss_conf 98887899971704999743533089428987767728999998689849999536444465----66------120150 Q gi|254781017|r 2 GQCLHKICVSAPGSLVLMGEHGVLHGHAALVFAINKRVILYLTLRKDRLINIDSSLGQYCGS----LD------LAMFHP 71 (324) Q Consensus 2 ~~~~~ki~~~aPGKv~L~GEh~v~~G~~ai~~aI~~~~~~~~~~~~~~~i~i~~~~~~~~~~----~~------~~~~~~ 71 (324) |+.|+-..++|||||+|||||+||+|++||++|||+++++.+++++++.+++.+...+.... ++ ...|.+ T Consensus 43 g~~~~~~~~~APGRv~L~GEH~Dy~Gg~vl~~AI~~~~~v~v~~~~d~~i~i~s~~~~~~~~~~~~~~~~~~~~~~~w~~ 122 (419) T 1pie_A 43 GDTKEVEYFFSPGRINLIGEHTDYNGGYVFPASITIGTTGLARLREDKKVKLYSENFPKLGVIEFDLDEVEKKDGELWSN 122 (419) T ss_dssp SCCCSCEEEEEEEEEEEECCSCTTTTCEEEEEEEEEEEEEEEEECSSSEEEEEETTCGGGCCEEEETTCTTSCCTTCTHH T ss_pred CCCCCCEEEECCCEEEEECCCEEECCCCEEEEEHHHCEEEEEEECCCCEEEEEECCCCCCEEEEECCCCCCCCCCCCHHH T ss_conf 89987169980013899628735789716926840086999999999989999899998607996040014566520688 Q ss_pred HHHHHHHHHHHHC--CCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCC- Q ss_conf 8999999999718--7787389998268753548874024566556777640456666014557888877652146887- Q gi|254781017|r 72 SFSFIIMAINHIK--PSCGFDLKVISQLDSQLGLGSSAAITVAITAALLTLQYHKEPSPDEILTTAHAIVLKVQGISSG- 148 (324) Q Consensus 72 ~~~~i~~~l~~~~--~~~g~~i~i~s~iP~g~GLGSSaa~~va~~~al~~~~~~~~~~~~~i~~lA~~~E~~~~g~~sG- 148 (324) ++..+...+.... ...||++.++|++|.|+|||||||++|+++.++..+ .+..+++.+++++++.+|+.++|.+|| T Consensus 123 y~~~~~~~l~~~~~~~~~G~~i~v~s~vP~gsGLsSSAAl~va~~~al~~~-~~~~~~~~~l~~l~~~~E~~~~g~~~G~ 201 (419) T 1pie_A 123 YVKGMIVMLKGAGYEIDKGFELLIKGEIPTASGLSSSASLELLVGVVLDDL-FNLNVPRLELVQLGQKTENDYIGVNSGI 201 (419) T ss_dssp HHHHHHHHHHHTTCCCCSCEEEEEEECSCTTSSSCHHHHHHHHHHHHHHHH-TTCCCCHHHHHHHHHHHHHHTTCCCCCS T ss_pred HHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHH-HCCCCCHHHHHHHHHHHHHHHCCCCCCC T ss_conf 899999999983898788769999557886667663688888999899998-5898767889999999998631788763 Q ss_pred HHHHHHHCCCE---EEEEECCCEEEEEECCC---CCCEEECCCCCCHHHHH---------HHHHHHHHHC--CCH----- Q ss_conf 54477662985---89985275156730477---75267658417989999---------8889988608--234----- Q gi|254781017|r 149 IDLAASIHGGL---ICYQMPKYSIEKIDFIF---PIHLIYSGYKTPTAQVL---------KKISYIEIEY--PEI----- 206 (324) Q Consensus 149 ~D~~a~~~Gg~---i~~~~~~~~~~~~~~~~---~l~l~~tg~~~~T~~~v---------~~v~~~~~~~--~~~----- 206 (324) +||+++.+|+. +++++........+.+. .+++++++.++.+.... .......... ... T Consensus 202 ~Dq~as~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~s~~~~~~~~~~~~~r~~e~~~a~~~~~~~~~~~~~~~~~~ 281 (419) T 1pie_A 202 LDQFAIGFGEVKKAIELDCNTLKYEMVPVELRDYDIVIMNTNKPRALTESKYNERFAETREALKRMQTRLDIQSLGELSN 281 (419) T ss_dssp HHHHHHHHCBTTEEEEEETTTCCEEEEECCCTTEEEEEEECCCCCCTTCHHHHHHHHHHHHHHHHHHHHCCCSSGGGCCH T ss_pred CHHHHHHCCCCCEEEHHHCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH T ss_conf 14788850753301000014543323556887867999625865534311234558888999999877417320778879 Q ss_pred ------------HHHHHHH--HHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHH-HCCCCHHHHHHHHHHHHCCCCE Q ss_conf ------------8999999--984033207889873048644568999998999986-1678779999999999719945 Q gi|254781017|r 207 ------------NEINQKI--YALMGKLSQISCQALRNKNLKVLAQAMNRQQGLLET-LGVSDSKLSEIVWKLREQPHIM 271 (324) Q Consensus 207 ------------~~~~~~~--~~~~~~i~~~~~~al~~~d~~~l~~lm~~~~~~L~~-lgvs~~~l~~li~~~~~~~g~~ 271 (324) ....+.. .......+.++.++++++|++.||++||++|.+|++ ++||+|++|++++.+++.+|++ T Consensus 282 ~~~~~~~~~~~~~~~~~ra~~~~~e~~rv~~~~~al~~~d~~~lG~Lm~esh~sL~~~~~vS~peLd~lv~~a~~~~Ga~ 361 (419) T 1pie_A 282 EEFDANTDLIGDETLIKRARHAVYENNRTKIAQKAFVAGNLTKFGELLNASHASLKDDYEVTGLELDTLAETAQKQAGVL 361 (419) T ss_dssp HHHHHTGGGTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHHSTTEE T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCE T ss_conf 88999875037788999998650688999999987532778889999999999999975799799999999999848957 Q ss_pred EEECCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHC-C--CEEEEEECCCCCCCC Q ss_conf 997268997548999846653268999999999977-9--789994145456445 Q gi|254781017|r 272 ASKISGSGLGDCVIALGKGDLNSLPYQSVNCHMHAK-G--IDIVPITPSHSTSLY 323 (324) Q Consensus 272 ~aklsGAG~GG~~i~l~~~~~~~~~~~~~~~~~~~~-g--~~~~~~~~~~~~~~~ 323 (324) |+|+||||||||+++|++++..+.+++.+++.+.++ | ...+..+|+.|..+. T Consensus 362 GaKltGAG~GGc~iaLv~~~~~~~~~~~l~~~y~~~~g~~~~~~~~~p~~Ga~~~ 416 (419) T 1pie_A 362 GARMTGAGFGGCAIALVAHDNVSAFRKAVGQVYEEVVGYPASFYVAQIGSGSTKL 416 (419) T ss_dssp EEEECSSCSSSEEEEEEEGGGHHHHHHHHHHHHHHHHSSCCEEEECCBCCCSBCC T ss_pred EEEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEC T ss_conf 9897057877289999760589999999999999841999739999658883672 No 7 >2oi2_A Mevalonate kinase; enzyme-inhibitor complex, transferase; HET: DP6; 2.50A {Streptococcus pneumoniae} Probab=100.00 E-value=0 Score=370.59 Aligned_cols=279 Identities=19% Similarity=0.245 Sum_probs=221.9 Q ss_pred EEECCEEEEEECCCEEECCCEEEEEEECC-EEEEEEEECCCCEEEEEECCCCCCCCCCHHHCCCHHHHHHHHHHHHC-CC Q ss_conf 99717049997435330894289877677-28999998689849999536444465661201508999999999718-77 Q gi|254781017|r 9 CVSAPGSLVLMGEHGVLHGHAALVFAINK-RVILYLTLRKDRLINIDSSLGQYCGSLDLAMFHPSFSFIIMAINHIK-PS 86 (324) Q Consensus 9 ~~~aPGKv~L~GEh~v~~G~~ai~~aI~~-~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~-~~ 86 (324) +.|||||++|||||+||||++||++||+. +.++++.+.++.. .. . ........+...++++. +. T Consensus 7 ~~~ApGKi~L~GEHavv~G~~aIa~ai~~~~~~~~~~~~~~~~----------~~-~---~~~~~~~~v~~~l~~~~~~~ 72 (292) T 2oi2_A 7 VGQAHSKIILIGEHAVVYGYPAISLPLLEVEVTCKVVPAESPW----------RL-Y---EEDTLSMAVYASLEYLNITE 72 (292) T ss_dssp EEEEEEEEEEECTTGGGGTCCEEEEEEEEEEEEEEEEECSSCC----------CC-C---CCSHHHHHHHHHHHHHTCSC T ss_pred EEEEEEEEEEEECCEECCCCCEEEEEECEEEEEEEEEECCCCC----------EE-C---CCCHHHHHHHHHHHHHCCCC T ss_conf 9997326899951744069856998875149999999878875----------21-4---67415389999999828998 Q ss_pred CCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCEEEEEECC Q ss_conf 87389998268753548874024566556777640456666014557888877652146887544776629858998527 Q gi|254781017|r 87 CGFDLKVISQLDSQLGLGSSAAITVAITAALLTLQYHKEPSPDEILTTAHAIVLKVQGISSGIDLAASIHGGLICYQMPK 166 (324) Q Consensus 87 ~g~~i~i~s~iP~g~GLGSSaa~~va~~~al~~~~~~~~~~~~~i~~lA~~~E~~~~g~~sG~D~~a~~~Gg~i~~~~~~ 166 (324) .|+++.++|+||.|+|||||||++||++.|++.+ ++.++++++++++|+.+|+.++|.+||+|+.++++||.+.|... T Consensus 73 ~g~~i~i~s~iP~g~GLgSSaA~~va~~~al~~~-~~~~l~~~el~~la~~~E~~~~g~~sG~d~~~~~~gg~~~~~~~- 150 (292) T 2oi2_A 73 ACIRCEIDSAIPEKRGMGSSAAISIAAIRAVFDY-YQADLPHDVLEILVNRAEMIAHMNPSGLDAKTCLSDQPIRFIKN- 150 (292) T ss_dssp CCEEEEEC----CCGGGSCHHHHHHHHHHHHHHH-HTCCCCHHHHHHHHHHHHHHTTCCCCSHHHHHHTCSSCEEEETT- T ss_pred CCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHH-HHHCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCEEEECCC- T ss_conf 8769999778999889780578999999999998-77349999999999987653257886557537982881896058- Q ss_pred CEEEEE--ECCCCCCEEECCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHH Q ss_conf 515673--047775267658417989999888998860823489999999840332078898730486445689999989 Q gi|254781017|r 167 YSIEKI--DFIFPIHLIYSGYKTPTAQVLKKISYIEIEYPEINEINQKIYALMGKLSQISCQALRNKNLKVLAQAMNRQQ 244 (324) Q Consensus 167 ~~~~~~--~~~~~l~l~~tg~~~~T~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~al~~~d~~~l~~lm~~~~ 244 (324) ....++ +++..++++++|.+++|+++++.++...... . ..++.++++++++.+||+++|++.|+++|+++| T Consensus 151 ~~~~~l~~~~~~~~~i~~~g~~~~T~~~v~~v~~~~~~~---~----~~~~~i~~~~~~~~~al~~~d~~~lg~lm~~~h 223 (292) T 2oi2_A 151 VGFTELEMDLSAYLVIADTGVYGHTREAIQVVQNKGKDA---L----PFLHALGELTQQAEIAISQKDAEGLGQILSQAH 223 (292) T ss_dssp TEEEECCCCCSCEEEEEECSSCCCHHHHHHHHHHTGGGG---H----HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH T ss_pred CCEEECCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHH---H----HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH T ss_conf 871332345633699995798743499999999860555---6----677778899999998775161889999999999 Q ss_pred HHHHHHCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCEEEEE Q ss_conf 9998616787799999999997199459972689975489998466532689999999999779789994 Q gi|254781017|r 245 GLLETLGVSDSKLSEIVWKLREQPHIMASKISGSGLGDCVIALGKGDLNSLPYQSVNCHMHAKGIDIVPI 314 (324) Q Consensus 245 ~~L~~lgvs~~~l~~li~~~~~~~g~~~aklsGAG~GG~~i~l~~~~~~~~~~~~~~~~~~~~g~~~~~~ 314 (324) ..|++++||+|+++++++.+++ .|++|+|+||||+|||+++|++++..+ +++.+.+.+.|+...-+ T Consensus 224 ~~l~~l~vs~p~ld~li~~a~~-~GalgaklsGaG~Gg~~~al~~~~~~a---~~i~~~l~~~G~~~~~i 289 (292) T 2oi2_A 224 LHLKEIGVSSLEADSLVETALS-HGALGAKMSGGGLGGCIIALVTNLTHA---QELAERLEEKGAVQTWI 289 (292) T ss_dssp HHHHHTTCCCHHHHHHHHHHHT-TTCSEEEEESSSSSSEEEEEESCHHHH---HHHHHHHHHHTCSEEEE T ss_pred HHHHHHCCCCHHHHHHHHHHHH-CCCCEEEEECCCCCCEEEEEECCHHHH---HHHHHHHHHCCCCCCCE T ss_conf 9999758998899999999987-899689996888746699998888999---99999999769963172 No 8 >1wuu_A Galactokinase; galactosemia, GHMP superfamily, transferase; HET: GLA ANP; 2.50A {Homo sapiens} SCOP: d.14.1.5 d.58.26.7 Probab=100.00 E-value=0 Score=364.68 Aligned_cols=319 Identities=18% Similarity=0.204 Sum_probs=235.1 Q ss_pred CCCCCEEEEECCEEEEEECCCEEECCCEEEEEEECCEEEEEEEECCCCEEEEEECCCCCC--CCCC----------HHHC Q ss_conf 988878999717049997435330894289877677289999986898499995364444--6566----------1201 Q gi|254781017|r 2 GQCLHKICVSAPGSLVLMGEHGVLHGHAALVFAINKRVILYLTLRKDRLINIDSSLGQYC--GSLD----------LAMF 69 (324) Q Consensus 2 ~~~~~ki~~~aPGKv~L~GEh~v~~G~~ai~~aI~~~~~~~~~~~~~~~i~i~~~~~~~~--~~~~----------~~~~ 69 (324) |.-| .+++||||||+|||||+||||++||++|||+|+++++++++++.+++.+...... ..++ ...+ T Consensus 32 g~~p-~~~~sAPGkviL~GEHavv~G~~ala~AI~l~t~v~~~~~~d~~i~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (399) T 1wuu_A 32 GAEP-ELAVSAPGRVNLIGEHTDYNQGLVLPMALELMTVLVGSPRKDGLVSLLTTSEGADEPQRLQFPLPTAQRSLEPGT 110 (399) T ss_dssp SSCC-SEEEEEEEEEEEECTTCGGGTCEEEEEEEEEEEEEEEEEETTCEEEEEECCSSSCSCSEEEEECCCSSCCCCCCS T ss_pred CCCC-CEEEEECEEEEEECCCHHCCCCEEEEEEHHHCEEEEEEECCCCEEEEEECCCCCCCCCEEEEECCCCCCCCCCCC T ss_conf 8999-899991349999718621589776826850068999999899979999877888764078741441002246565 Q ss_pred CCHHHHHHHHHHHH--CCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCC Q ss_conf 50899999999971--8778738999826875354887402456655677764045666601455788887765214688 Q gi|254781017|r 70 HPSFSFIIMAINHI--KPSCGFDLKVISQLDSQLGLGSSAAITVAITAALLTLQYHKEPSPDEILTTAHAIVLKVQGISS 147 (324) Q Consensus 70 ~~~~~~i~~~l~~~--~~~~g~~i~i~s~iP~g~GLGSSaa~~va~~~al~~~~~~~~~~~~~i~~lA~~~E~~~~g~~s 147 (324) .....++...+..+ ....|+++.+.|++|.++|||||||++|+++.|++.+ ++..+++.+++++|+.+|..++|.+| T Consensus 111 ~~~~~~~~~~~~~~~~~~~~g~~i~i~S~iP~gaGLgSSAA~~Va~~~al~~~-~~~~~~~~~~~~~a~~~e~~~~G~~~ 189 (399) T 1wuu_A 111 PRWANYVKGVIQYYPAAPLPGFSAVVVSSVPLGGGLSSSASLEVATYTFLQQL-CPDSGTIAARAQVCQQAEHSFAGMPC 189 (399) T ss_dssp SGGGHHHHHHHHHCSSSCCCEEEEEEEECSCTTSSSCHHHHHHHHHHHHHHHH-SCCCSCHHHHHHHHHHHHHHHTCCCC T ss_pred CHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHH-HCCCCCHHHHHHHHHHHHHHHCCCCC T ss_conf 21567778999986404678659999777786567451168999999999986-22588688888999999997608776 Q ss_pred C-HHHHHHHCCC---EEEEEECCCEEEEEECCCC---CCEEECCCCCCHHHHHHHHHH--------HHHHC--------- Q ss_conf 7-5447766298---5899852751567304777---526765841798999988899--------88608--------- Q gi|254781017|r 148 G-IDLAASIHGG---LICYQMPKYSIEKIDFIFP---IHLIYSGYKTPTAQVLKKISY--------IEIEY--------- 203 (324) Q Consensus 148 G-~D~~a~~~Gg---~i~~~~~~~~~~~~~~~~~---l~l~~tg~~~~T~~~v~~v~~--------~~~~~--------- 203 (324) | +|++++.+|+ +++++.........+++.+ +++++++.++.+......++. ..... T Consensus 190 g~~dq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~R~~e~~~~~~~~~~~~~~~~~~~~ 269 (399) T 1wuu_A 190 GIMDQFISLMGQKGHALLIDCRSLETSLVPLSDPKLAVLITNSNVRHSLASSEYPVRRRQCEEVARALGKESLREVQLEE 269 (399) T ss_dssp CSHHHHHHHHCCTTEEEEEETTTCCEEEEECCCSSEEEEEEEEEEEC--CTTTHHHHHHHHHHHHHHTTCSSTTSCCHHH T ss_pred CCCCHHHHHHCCCCEEEEECCCCCCEEEECCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHH T ss_conf 65316677533676588731687633430146663489997278520243025788899999999983710012244999 Q ss_pred ------CCHHHHHHHHHHHH--CCCCHHHHHHHCCCCHHHHHHHHHHHHHHHH-HHCCCCHHHHHHHHHHHHCCCCEEEE Q ss_conf ------23489999999840--3320788987304864456899999899998-61678779999999999719945997 Q gi|254781017|r 204 ------PEINEINQKIYALM--GKLSQISCQALRNKNLKVLAQAMNRQQGLLE-TLGVSDSKLSEIVWKLREQPHIMASK 274 (324) Q Consensus 204 ------~~~~~~~~~~~~~~--~~i~~~~~~al~~~d~~~l~~lm~~~~~~L~-~lgvs~~~l~~li~~~~~~~g~~~ak 274 (324) ....+..+.....+ ...+..+.++++++|++.||++|+++|..|+ .+|||+|++|++++.+++.+|++|+| T Consensus 270 ~~~~~~~~~~~~~~ra~~~~~e~~~~~~~~~al~~~d~~~lG~Lm~~~h~~L~~~lgVS~p~Ld~lv~~a~~~~Ga~gaK 349 (399) T 1wuu_A 270 LEAARDLVSKEGFRRARHVVGEIRRTAQAAAALRRGDYRAFGRLMVESHRSLRDDYEVSCPELDQLVEAALAVPGVYGSR 349 (399) T ss_dssp HTTGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHTSTTEEEEE T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEE T ss_conf 99987520447899998887788888889987753899999999999999999864799799999999998749973989 Q ss_pred CCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCC Q ss_conf 2689975489998466532689999999999779789994145456445 Q gi|254781017|r 275 ISGSGLGDCVIALGKGDLNSLPYQSVNCHMHAKGIDIVPITPSHSTSLY 323 (324) Q Consensus 275 lsGAG~GG~~i~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 323 (324) +||||||||+++|++++..+++++.+.+.+. .....+...|..|+++. T Consensus 350 ltGAGgGGc~iaL~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~Ga~vl 397 (399) T 1wuu_A 350 MTGGGFGGCTVTLLEASAAPHAMRHIQEHYG-GTATFYLSQAADGAKVL 397 (399) T ss_dssp ECSSCSEEEEEEEEEGGGHHHHHHHHHHHCS-SCCEEEEECCCCCSEEC T ss_pred ECCCCCCEEEEEEECHHHHHHHHHHHHHHHC-CCCEEEEEECCCCCEEE T ss_conf 7357776399999766789999999999858-98729999768982784 No 9 >2pg9_A Phosphomevalonate kinase; GHMP kinase superfamily, transferase; HET: PMV ANP; 1.90A {Streptococcus pneumoniae} PDB: 1k47_A* 3gon_A* Probab=100.00 E-value=0 Score=362.51 Aligned_cols=292 Identities=21% Similarity=0.226 Sum_probs=230.1 Q ss_pred CEEEEECCEEEEEECCCEEEC-CCEEEEEEECCEEEEEEEECCCCEEEEEECCCCCCCCCCHHHCCCHH----HHHHHHH Q ss_conf 789997170499974353308-94289877677289999986898499995364444656612015089----9999999 Q gi|254781017|r 6 HKICVSAPGSLVLMGEHGVLH-GHAALVFAINKRVILYLTLRKDRLINIDSSLGQYCGSLDLAMFHPSF----SFIIMAI 80 (324) Q Consensus 6 ~ki~~~aPGKv~L~GEh~v~~-G~~ai~~aI~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~----~~i~~~l 80 (324) ..|.+|||||++|+|||+|+| |++||++|||+|++++++++++..+..+. .+.......+...+.+ ..+...+ T Consensus 2 ~~~~~~apGKv~L~GE~aVv~~G~~al~~AI~~~~~v~v~~~~~~~i~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~ 79 (337) T 2pg9_A 2 MMIAVKTCGKLYWAGEYAILEPGQLALIKDIPIYMRAEIAFSDSYRIYSDM--FDFAVDLRPNPDYSLIQETIALMGDFL 79 (337) T ss_dssp -CEEEEEEEEEEEECTTGGGSTTCEEEEEEEEEEEEEEEEECSSCEEEETT--SSSCBCSSCCTTTHHHHHHHHHHHHHH T ss_pred CEEEEEECCEEEEEECCEEECCCCCEEEEEECCEEEEEEEECCCCEEEECC--CCCCCCCCCCCCHHHHHHHHHHHHHHH T ss_conf 469999780999980654986999499999502499999999997899847--886540577875189999999999999 Q ss_pred HHH-CCCCCEEEEEECCCCCCC---CCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHC Q ss_conf 971-877873899982687535---4887402456655677764045666601455788887765214688754477662 Q gi|254781017|r 81 NHI-KPSCGFDLKVISQLDSQL---GLGSSAAITVAITAALLTLQYHKEPSPDEILTTAHAIVLKVQGISSGIDLAASIH 156 (324) Q Consensus 81 ~~~-~~~~g~~i~i~s~iP~g~---GLGSSaa~~va~~~al~~~~~~~~~~~~~i~~lA~~~E~~~~g~~sG~D~~a~~~ 156 (324) ... ....|+++.++|++|.++ |||||||++||++.|++.+ ++.++++++++++|+.+|+.++|++||+||++|+| T Consensus 80 ~~~~~~~~~~~i~i~s~ip~~~~~~GLgSSAA~~va~~~al~~~-~~~~l~~~~l~~la~~~E~~~~g~~sg~D~~~~~~ 158 (337) T 2pg9_A 80 AVRGQNLRPFSLAIYGKMEREGKKFGLGSSGSVVVLVVKALLAL-YNLSVDQNLLFKLTSAVLLKRGDNGSMGDLACIAA 158 (337) T ss_dssp HHTTCCCCCEEEEEECCSEETTEECSSCHHHHHHHHHHHHHHHH-TTCCCCHHHHHHHHHHHHHHTTCCSCSHHHHHHHH T ss_pred HHCCCCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHC T ss_conf 97199988649999852687767677650899999999999985-18753399999999999987458988645477717 Q ss_pred CCEEEEEECCC----------------------EEEEE--ECCCCCCEEECCCCCCHHHHHHHHHHHHHHCCCHHHHHHH Q ss_conf 98589985275----------------------15673--0477752676584179899998889988608234899999 Q gi|254781017|r 157 GGLICYQMPKY----------------------SIEKI--DFIFPIHLIYSGYKTPTAQVLKKISYIEIEYPEINEINQK 212 (324) Q Consensus 157 Gg~i~~~~~~~----------------------~~~~~--~~~~~l~l~~tg~~~~T~~~v~~v~~~~~~~~~~~~~~~~ 212 (324) ||++.|+..+. .+.++ +....+++++|+.+++|+++++.|++. .. +. T Consensus 159 Gg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tg~~~~t~~~v~~v~~~---~~------~~ 229 (337) T 2pg9_A 159 EDLVLYQSFDRQKVAAWLEEENLATVLERDWGFSISQVKPTLECDFLVGWTKEVAVSSHMVQQIKQN---IN------QN 229 (337) T ss_dssp TSCEEEECCCHHHHHHHHHHSCHHHHHHSCCCCEEEECCCCSCCEEEEEECCCCCCHHHHHHHHGGG---CC------HH T ss_pred CCEEEEEECCHHHHHHHHCCCCCCEEEECCCCCEEEEECCCCCCCEEEEECCCCCCHHHHHHHHHHH---HH------HH T ss_conf 9739999368244223311333000330478732698048877528999569962259999999877---77------89 Q ss_pred HHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEEECC Q ss_conf 998403320788987304864456899999899998616--787799999999997199459972689975489998466 Q gi|254781017|r 213 IYALMGKLSQISCQALRNKNLKVLAQAMNRQQGLLETLG--VSDSKLSEIVWKLREQPHIMASKISGSGLGDCVIALGKG 290 (324) Q Consensus 213 ~~~~~~~i~~~~~~al~~~d~~~l~~lm~~~~~~L~~lg--vs~~~l~~li~~~~~~~g~~~aklsGAG~GG~~i~l~~~ 290 (324) +...+..++..+.+||+++|++.|+++|+++|.+|++++ +++|+++++++.+.+. | +++|+||||||||+++|+++ T Consensus 230 ~~~~~~~~v~~~~~al~~~d~~~l~~lm~~~~~~l~~l~~~i~~p~l~~l~~~a~~~-g-~~aklsGAG~Gg~~ial~~~ 307 (337) T 2pg9_A 230 FLTSSKETVVSLVEALEQGKSEKIIEQVEVASKLLEGLSTDIYTPLLRQLKEASQDL-Q-AVAKSSGAGGGDCGIALSFD 307 (337) T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTTTTS-S-EEEEECTTCSSSEEEEEECS T ss_pred HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHC-C-CEEEECCCCCHHEEEEEECC T ss_conf 999999999999999873889999999999999998278777998999999999819-9-59999152615569999888 Q ss_pred CCCHHHHHHHHHHHHHCCCEEEEE Q ss_conf 532689999999999779789994 Q gi|254781017|r 291 DLNSLPYQSVNCHMHAKGIDIVPI 314 (324) Q Consensus 291 ~~~~~~~~~~~~~~~~~g~~~~~~ 314 (324) + +..+.+.++|.+.|+..+.. T Consensus 308 ~---~~~~~l~~~~~~~Gi~~~~~ 328 (337) T 2pg9_A 308 A---QSTKTLKNRWADLGIELLYQ 328 (337) T ss_dssp H---HHHHHHHHHHHHTTCEEEEE T ss_pred H---HHHHHHHHHHHHCCCEEEEE T ss_conf 8---99999999999779949888 No 10 >1kkh_A Mevalonate kinase; mixed beta sheet, phosphate-binding loop, beta-alpha-beta, transferase; 2.40A {Methanocaldococcus jannaschii} SCOP: d.14.1.5 d.58.26.3 PDB: 1vis_A Probab=100.00 E-value=0 Score=362.61 Aligned_cols=296 Identities=23% Similarity=0.310 Sum_probs=236.1 Q ss_pred CCCCEEEEECCEEEEEECCCEEECCCEEEEEEECCEEEEEEEECCCCEEEEEECCCCCCCCCC--------HH---HCCC Q ss_conf 888789997170499974353308942898776772899999868984999953644446566--------12---0150 Q gi|254781017|r 3 QCLHKICVSAPGSLVLMGEHGVLHGHAALVFAINKRVILYLTLRKDRLINIDSSLGQYCGSLD--------LA---MFHP 71 (324) Q Consensus 3 ~~~~ki~~~aPGKv~L~GEh~v~~G~~ai~~aI~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~--------~~---~~~~ 71 (324) |-+.+|.+|||||++|+|||+||+|++||++|||+|+++++++++++.+.+.+.........+ .. .+.. T Consensus 1 ~~~~~~~v~aPgki~L~GEh~v~~G~~al~~aI~~~~~v~i~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (317) T 1kkh_A 1 PRGSHMIIETPSKVILFGEHAVVYGYRAISMAIDLTSTIEIKETQEDEIILNLNDLNKSLGLNLNEIKNINPNNFGDFKY 80 (317) T ss_dssp CTTCCEEEEEEEEEEEECTTGGGGTCCEEEEEEEEEEEEEEEECCSSEEEEEETTTTEEEEEETTTGGGCCGGGSGGGHH T ss_pred CCCCEEEEEEEEEEEEECCCCEECCCCEEEEEECCEEEEEEEECCCCEEEEEECCCCCCEEEEHHHCCCCCCCCCCCHHH T ss_conf 99983999931099998167134799889999626599999998899799997478862688601132358554422899 Q ss_pred HHHHHHHHHHHHC--CCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCH Q ss_conf 8999999999718--77873899982687535488740245665567776404566660145578888776521468875 Q gi|254781017|r 72 SFSFIIMAINHIK--PSCGFDLKVISQLDSQLGLGSSAAITVAITAALLTLQYHKEPSPDEILTTAHAIVLKVQGISSGI 149 (324) Q Consensus 72 ~~~~i~~~l~~~~--~~~g~~i~i~s~iP~g~GLGSSaa~~va~~~al~~~~~~~~~~~~~i~~lA~~~E~~~~g~~sG~ 149 (324) ....+...+++.. +..|++|.++|+||.|+|||||||++||++++++.+ ++..+++++++++|+.+|+.+++.+||+ T Consensus 81 ~~~~~~~~~~~~~~~~~~g~~i~i~s~iP~g~GLGSSsA~~va~~~al~~~-~~~~l~~~el~~la~~~E~~~~~~~s~~ 159 (317) T 1kkh_A 81 CLCAIKNTLDYLNIEPKTGFKINISSKIPISCGLGSSASITIGTIKAVSGF-YNKELKDDEIAKLGYMVEKEIQGKASIT 159 (317) T ss_dssp HHHHHHHHHHHTTCCCCSCEEEEEEECSCSSSSSCHHHHHHHHHHHHHHHT-TTCCCCHHHHHHHHHHHHHHHSSSCCSH T ss_pred HHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHH-HHCCCCHHHHHHHHHHHHHHCCCCCCCC T ss_conf 999999999982878898669999678988778745689999998876444-1015887887766688986228888876 Q ss_pred HHHHHHCCCEEEEEECCCEEEEEE------CCCCCCEEECCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHH Q ss_conf 447766298589985275156730------47775267658417989999888998860823489999999840332078 Q gi|254781017|r 150 DLAASIHGGLICYQMPKYSIEKID------FIFPIHLIYSGYKTPTAQVLKKISYIEIEYPEINEINQKIYALMGKLSQI 223 (324) Q Consensus 150 D~~a~~~Gg~i~~~~~~~~~~~~~------~~~~l~l~~tg~~~~T~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~i~~~ 223 (324) |++++.|||+++++..+....+.+ ....+++++++...+|+++++.++.... ..++.+ ++... T Consensus 160 D~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~----~~~~~~-------~i~~~ 228 (317) T 1kkh_A 160 DTSTITYKGILEIKNNKFRKIKGEFEEFLKNCKFLIVYAEKRKKKTAELVNEVAKIEN----KDEIFK-------EIDKV 228 (317) T ss_dssp HHHHHHHCSEEEESSSCEEEECHHHHHHHHTCCEEEEEEECCCSCHHHHHHHHHTCTT----HHHHHH-------HHHHH T ss_pred CHHHHCCCCEEEEECCCCEEECCCHHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----HHHHHH-------HHHHH T ss_conf 3034305865996179613611202001111222200206743142989998887766----778999-------98887 Q ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEEECCCCCHHHHHHHHHH Q ss_conf 89873048644568999998999986167877999999999971994599726899754899984665326899999999 Q gi|254781017|r 224 SCQALRNKNLKVLAQAMNRQQGLLETLGVSDSKLSEIVWKLREQPHIMASKISGSGLGDCVIALGKGDLNSLPYQSVNCH 303 (324) Q Consensus 224 ~~~al~~~d~~~l~~lm~~~~~~L~~lgvs~~~l~~li~~~~~~~g~~~aklsGAG~GG~~i~l~~~~~~~~~~~~~~~~ 303 (324) ..+|++.+|++.|+++|+++|..++++++++|+++++++.+++. | +++|+||||+|||+++|++++.. +++.++ T Consensus 229 ~~eal~~~d~~~l~~~m~~~~~~~~~~~i~~~~l~~l~~~~~~~-g-~~ak~sGaG~Gg~~~~~~~~~~~----~~~~~~ 302 (317) T 1kkh_A 229 IDEALKIKNKEDFGKLMTKNHELLKKLNISTPKLDRIVDIGNRF-G-FGAKLTGAGGGGCVIILVNEEKE----KELLKE 302 (317) T ss_dssp HHHHHHCCSHHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHH-S-SEEEECSSSSSEEEEEECCGGGH----HHHHHH T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHC-C-CEEEEECCCCCCEEEEEECHHHH----HHHHHH T ss_conf 88876500057899999997999987289988999999999837-9-58998078863889999881579----999999 Q ss_pred HHHCCCEEEEEEC Q ss_conf 9977978999414 Q gi|254781017|r 304 MHAKGIDIVPITP 316 (324) Q Consensus 304 ~~~~g~~~~~~~~ 316 (324) |.++|++++.... T Consensus 303 ~~~~~~~~~~~~~ 315 (317) T 1kkh_A 303 LNKEDVRIFNCRM 315 (317) T ss_dssp HHTSSCEEEEECB T ss_pred HHHCCCEEEEEEE T ss_conf 9974983999994 No 11 >2a2c_A N-acetylgalactosamine kinase; galactokinase, , transferase; HET: NG1 ADP; 1.65A {Homo sapiens} PDB: 2a2d_A* Probab=100.00 E-value=0 Score=357.21 Aligned_cols=319 Identities=17% Similarity=0.198 Sum_probs=230.0 Q ss_pred CCCCCEEEEECCEEEEEECCCEEECCCEEEEEEECCEEEEEEEECCCCEEEEEECCCCC---CCCCC-------HHHCCC Q ss_conf 98887899971704999743533089428987767728999998689849999536444---46566-------120150 Q gi|254781017|r 2 GQCLHKICVSAPGSLVLMGEHGVLHGHAALVFAINKRVILYLTLRKDRLINIDSSLGQY---CGSLD-------LAMFHP 71 (324) Q Consensus 2 ~~~~~ki~~~aPGKv~L~GEh~v~~G~~ai~~aI~~~~~~~~~~~~~~~i~i~~~~~~~---~~~~~-------~~~~~~ 71 (324) |..|. +.+||||||+|||||+||+|++||++|||+++++.+++++++.+++.+....+ ....+ ...|.+ T Consensus 51 g~~P~-~~~~APGRV~L~GEH~DY~gg~Vl~~AI~~~~~v~v~~~~d~~v~l~s~~~~~~~~~~~~~~~~~~~~~~~w~~ 129 (478) T 2a2c_A 51 GSIPK-FYVRAPGRVNIIGEHIDYCGYSVLPMAVEQDVLIAVEPVKTYALQLANTNPLYPDFSTSANNIQIDKTKPLWHN 129 (478) T ss_dssp SSCCS-EEEEEEEEEEEECTTCGGGTCCBEEEEEEEEEEEEEEECSSSCEEEEESSTTSCCEEECCCCC--CCSSCCHHH T ss_pred CCCCC-EEEECCCCEEEECCCCEECCCEEEEEEHHHCEEEEEEECCCCEEEEEECCCCCCCEECCCCCCCCCCCCCCHHH T ss_conf 89986-99988812785058710399878904861378999998789879999889887742211433455656653788 Q ss_pred HHHHHHHH-HHHH--CCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCC Q ss_conf 89999999-9971--87787389998268753548874024566556777640456666014557888877652146887 Q gi|254781017|r 72 SFSFIIMA-INHI--KPSCGFDLKVISQLDSQLGLGSSAAITVAITAALLTLQYHKEPSPDEILTTAHAIVLKVQGISSG 148 (324) Q Consensus 72 ~~~~i~~~-l~~~--~~~~g~~i~i~s~iP~g~GLGSSaa~~va~~~al~~~~~~~~~~~~~i~~lA~~~E~~~~g~~sG 148 (324) ++..++.. ++++ .+..|+++.++|+||+|+|||||||++||++.++..+. +..++..++.++++..|+.++..+++ T Consensus 130 y~~~~~~~~~~~~~~~~~~G~~i~i~S~iP~gaGLsSSAAl~vA~~~al~~~~-~~~~~~~~~~~~~~~~E~~~g~~~G~ 208 (478) T 2a2c_A 130 YFLCGLKGIQEHFGLSNLTGMNCLVDGNIPPSSGLSSSSALVCCAGLVTLTVL-GRNLSKVELAEICAKSERYIGTEGGG 208 (478) T ss_dssp HHHHHHHHHHHHTTCCSCCCEEEEEEECSCTTSSSCHHHHHHHHHHHHHHHHH-TCCCCHHHHHHHHHHHHGGGTCCCCS T ss_pred HHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHH-CCCCCHHHHHHHHHHHHHHCCCCCCC T ss_conf 99999999999708888887699994677887776766899999999999862-56877899999878998743898740 Q ss_pred HHHHHHHCCC---EEEEEECCCEEEEEECCCC--CCEEECCCCCCHH----------HH--------------------- Q ss_conf 5447766298---5899852751567304777--5267658417989----------99--------------------- Q gi|254781017|r 149 IDLAASIHGG---LICYQMPKYSIEKIDFIFP--IHLIYSGYKTPTA----------QV--------------------- 192 (324) Q Consensus 149 ~D~~a~~~Gg---~i~~~~~~~~~~~~~~~~~--l~l~~tg~~~~T~----------~~--------------------- 192 (324) +||+++++|+ ++++++.+.....++++.. +++++++...++. ++ T Consensus 209 mDq~as~~g~~~~~l~~d~~~~~~~~~~~p~~~~~~i~~s~~~~~~~~~~~y~~r~~e~~~a~~~l~~~~~~~~~~~~~l 288 (478) T 2a2c_A 209 MDQSISFLAEEGTAKLIEFSPLRATDVKLPSGAVFVIANSCVEMNKAATSHFNIRVMECRLAAKLLAKYKSLQWDKVLRL 288 (478) T ss_dssp HHHHHHHHCBTTBEEEEETTTTEEEEECCCTTEEEEEEECCCCCCGGGSSHHHHHHHHHHHHHHHHHHHTTCCTTTCCCH T ss_pred HHHHHHHHCCCCEEEECCCCCCCEEECCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH T ss_conf 88999970657389973478862343557988638998347633445653155669999999999702014442022037 Q ss_pred --------------HHHHHHHHHHCCCHH-HHH----------------------------HHHHHHHCC--CCHHH--- Q ss_conf --------------988899886082348-999----------------------------999984033--20788--- Q gi|254781017|r 193 --------------LKKISYIEIEYPEIN-EIN----------------------------QKIYALMGK--LSQIS--- 224 (324) Q Consensus 193 --------------v~~v~~~~~~~~~~~-~~~----------------------------~~~~~~~~~--i~~~~--- 224 (324) +..+.......+... ++. +.....+.+ .+.++ T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ei~~~~~~~~~e~~~~~l~~~~~~~~~~~l~~Ra~hv~~E~~Rv~~~~~~ 368 (478) T 2a2c_A 289 EEVQAKLGISLEEMLLVTEDALHPEPYNPEEICRCLGISLEELRTQILSPNTQDVLIFKLYQRAKHVYSEAARVLQFKKI 368 (478) T ss_dssp HHHHHHHTCCHHHHHHHHHHHSCSSCBCHHHHHHHHTCCHHHHHHHTSCGGGTTCCCBCHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 88775407889999999886403254789999987766588887653130233201067889999999999999999999 Q ss_pred HHHHCCCCHHHHHHHHHHHHHHHHH-HCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEEECCCCCHHHHHHHHHH Q ss_conf 9873048644568999998999986-167877999999999971994599726899754899984665326899999999 Q gi|254781017|r 225 CQALRNKNLKVLAQAMNRQQGLLET-LGVSDSKLSEIVWKLREQPHIMASKISGSGLGDCVIALGKGDLNSLPYQSVNCH 303 (324) Q Consensus 225 ~~al~~~d~~~l~~lm~~~~~~L~~-lgvs~~~l~~li~~~~~~~g~~~aklsGAG~GG~~i~l~~~~~~~~~~~~~~~~ 303 (324) .+++.++|++.||++||++|.+|++ +|||+|++|.+++.+++ .|++|+||||||||||+++|++.+..+.+++.+.+. T Consensus 369 l~~~~~~dl~~lG~Lmn~sh~sLr~~y~VS~peLd~lv~~a~~-~Ga~GaKlTGAG~GGc~iaLv~~~~~~~~~~~l~~~ 447 (478) T 2a2c_A 369 CEEAPENMVQLLGELMNQSHMSCRDMYECSCPELDQLVDICRK-FGAQGSRLTGAGWGGCTVSMVPADKLPSFLANVHKA 447 (478) T ss_dssp HHHCCTTHHHHHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHH-TTCSEEEECTTCSSSEEEEEEEGGGHHHHHHHHHHH T ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH-CCCCEEEEECCCCCEEEEEEECHHHHHHHHHHHHHH T ss_conf 9856300799999999999999987217998999999999997-699689981588612799996467899999999999 Q ss_pred HHHCC--------CEEEEEECCCCCCCC Q ss_conf 99779--------789994145456445 Q gi|254781017|r 304 MHAKG--------IDIVPITPSHSTSLY 323 (324) Q Consensus 304 ~~~~g--------~~~~~~~~~~~~~~~ 323 (324) +.++. ..++..+|..|..+. T Consensus 448 y~~~~~~~~~~~~~~~~~~~p~~Ga~v~ 475 (478) T 2a2c_A 448 YYQRSDGSLAPEKQSLFATKPGGGALVL 475 (478) T ss_dssp HHC---------CCSEEEECCBCCCEEE T ss_pred HHHHHCCCCCCCCCEEEEEECCCCEEEE T ss_conf 9974176656677609998258980883 No 12 >3k85_A D-glycero-D-manno-heptose 1-phosphate kinase; bacteriodes thetaiotaomicron, protein structure initiative II(PSI II), nysgxrc; 2.28A {Bacteroides thetaiotaomicron} Probab=100.00 E-value=0 Score=363.37 Aligned_cols=303 Identities=17% Similarity=0.157 Sum_probs=236.7 Q ss_pred CCEEEEECCEEEEEECCCEEE------CCCEEEEEEECCEEEEEEEECCCCEEEEEECCCCCCCC------CCHHHCCCH Q ss_conf 878999717049997435330------89428987767728999998689849999536444465------661201508 Q gi|254781017|r 5 LHKICVSAPGSLVLMGEHGVL------HGHAALVFAINKRVILYLTLRKDRLINIDSSLGQYCGS------LDLAMFHPS 72 (324) Q Consensus 5 ~~ki~~~aPGKv~L~GEh~v~------~G~~ai~~aI~~~~~~~~~~~~~~~i~i~~~~~~~~~~------~~~~~~~~~ 72 (324) |+=|.+||||||+|+|||+|| ||+.+|++|||+|+++++++++++.+.+.+........ .....+... T Consensus 1 ~~~i~~raP~RI~l~G~~tD~~~~~~~~gG~via~AId~~~~v~v~~~~~~~i~i~~~d~~~~~~~~~~~~~~~~~~~~~ 80 (357) T 3k85_A 1 MSLVRSKAPLRLGLAGGGSDVSPYSDIYGGLILNATINLYAYCTIEETNSGRIEINAYDAQCCKSYLSMSQLEIDGEASL 80 (357) T ss_dssp --CEEEEEEEEEEEECTTTTSTTHHHHTCEEEEEEEEEEEEEEEEEECSSSEEEEEETTTTEEEEEECCSSCCCCSSSHH T ss_pred CCEEEEECCEEEEEECCCCCCCHHHCCCCCEEEEEEECCCEEEEEEECCCCEEEEEECCCCCEEEEECCCCCCCCCHHHH T ss_conf 96999989997898707636811334489799999986818999999999969999658885169812431234660678 Q ss_pred HHHHH-HHHHH-HCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCC-H Q ss_conf 99999-99997-187787389998268753548874024566556777640456666014557888877652146887-5 Q gi|254781017|r 73 FSFII-MAINH-IKPSCGFDLKVISQLDSQLGLGSSAAITVAITAALLTLQYHKEPSPDEILTTAHAIVLKVQGISSG-I 149 (324) Q Consensus 73 ~~~i~-~~l~~-~~~~~g~~i~i~s~iP~g~GLGSSaa~~va~~~al~~~~~~~~~~~~~i~~lA~~~E~~~~g~~sG-~ 149 (324) +...+ ..++. .....|++|.++|++|.|+|||||||++||++.|++.+ ++..+++++++++|+.+|..++|.+|| + T Consensus 81 i~~~~~~~~~~~~~~~~g~~i~i~S~iP~gsGLGSSAA~~Va~~~al~~~-~~~~l~~~~l~~~a~~~E~~~~g~~~G~~ 159 (357) T 3k85_A 81 IKGVYNRIIRDYRLEPKSFKITTYNDAPAGSGLGTSSTMVVCILKAFIEW-LSLPLGDYETSRLAYEIERKDLGLSGGKQ 159 (357) T ss_dssp HHHHHHHHHHHTTCCCCCEEEEEEESSCSSSSSCHHHHHHHHHHHHHHHH-HTCCCCHHHHHHHHHHHHHTTTCCCCCSH T ss_pred HHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHH-HHHHCCCHHHHHHHHHHHHHHCCCCCCCC T ss_conf 99999999997278898759999657868889884068889889998865-54511538899999987665428987765 Q ss_pred HHHHHHCCCEEEEEECCCEEEE---EEC--------CCCCCEEECCCCCCHHHHHHHHHHH-HHHCCCHHHHHHHHHHHH Q ss_conf 4477662985899852751567---304--------7775267658417989999888998-860823489999999840 Q gi|254781017|r 150 DLAASIHGGLICYQMPKYSIEK---IDF--------IFPIHLIYSGYKTPTAQVLKKISYI-EIEYPEINEINQKIYALM 217 (324) Q Consensus 150 D~~a~~~Gg~i~~~~~~~~~~~---~~~--------~~~l~l~~tg~~~~T~~~v~~v~~~-~~~~~~~~~~~~~~~~~~ 217 (324) ||+++++||++++++.+..... +.+ ..++++++|+.+++|++++..+... ....+...+... .+ T Consensus 160 D~~~~~~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tg~~~~s~~~~~~~~~~~~~~~~~~~~~~~----~~ 235 (357) T 3k85_A 160 DQYAAAFGGFNYMEFLQNDLVIVNPLKMKRWIVDELESSMVLYFTGRSRSSAAIINEQKKNTSEGNQTAIEAMH----KI 235 (357) T ss_dssp HHHHHHHCSEEEEEEETTTEEEEEEECCCHHHHHHHHHTEEEECC---------------------CCTTHHHH----HH T ss_pred CCHHHCCCCCCEEEECCCCCEEECCCCCCHHHHHHHHHCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHH----HH T ss_conf 40645167621577405884377112320445555430332542475330776667888766430188998887----77 Q ss_pred CCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEEECCCCCHH Q ss_conf 332078898730486445689999989999861--678779999999999719945997268997548999846653268 Q gi|254781017|r 218 GKLSQISCQALRNKNLKVLAQAMNRQQGLLETL--GVSDSKLSEIVWKLREQPHIMASKISGSGLGDCVIALGKGDLNSL 295 (324) Q Consensus 218 ~~i~~~~~~al~~~d~~~l~~lm~~~~~~L~~l--gvs~~~l~~li~~~~~~~g~~~aklsGAG~GG~~i~l~~~~~~~~ 295 (324) .+++.++.++++++|++.|+++|+++|..+..+ ++|+|+++++++.+++ .|++|+|+||||||||+++|++++.. T Consensus 236 ~~~~~~~~~a~~~~d~~~lg~lm~~~~~~~~~l~~~vs~~~ld~l~~~a~~-~Ga~gaKlsGAGgGG~~~~l~~~~~~-- 312 (357) T 3k85_A 236 KQSAIDTKLALLKGDVGEFARILGEGWENKKKMAGAITNPMIQEAFDVATG-AGAMAGKVSGAGGGGFIMFVVEPTRK-- 312 (357) T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHTTC-----------CCSCTTTT-SCCSEEEECCCC---CEEEECCHHHH-- T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-CCCEEEEEEEECHHHEEEEEECHHHH-- T ss_conf 666677787663026999999999999987764147998999999999976-89969999730610289999876459-- Q ss_pred HHHHHHHHHHHCCCEEEEEECC Q ss_conf 9999999999779789994145 Q gi|254781017|r 296 PYQSVNCHMHAKGIDIVPITPS 317 (324) Q Consensus 296 ~~~~~~~~~~~~g~~~~~~~~~ 317 (324) +++.+++...|++.++.+.+ T Consensus 313 --~~~~~~l~~~~~~~~~~~~~ 332 (357) T 3k85_A 313 --EEVVRALNNLNGFVMPFQFI 332 (357) T ss_dssp --HHHHHHHHTSSSCBCCCCBC T ss_pred --HHHHHHHHHCCCEEEEEEEC T ss_conf --99999998779849999991 No 13 >2aj4_A Galactokinase; galactosemia, transcription, transferase; HET: GLA ANP; 2.40A {Saccharomyces cerevisiae} Probab=100.00 E-value=0 Score=343.16 Aligned_cols=320 Identities=16% Similarity=0.211 Sum_probs=220.4 Q ss_pred CCCCCEEEEECCEEEEEECCCEEECCCEEEEEEECCEEEEEEEECCCCEEEEEECCCCCCC-----CCC----------- Q ss_conf 9888789997170499974353308942898776772899999868984999953644446-----566----------- Q gi|254781017|r 2 GQCLHKICVSAPGSLVLMGEHGVLHGHAALVFAINKRVILYLTLRKDRLINIDSSLGQYCG-----SLD----------- 65 (324) Q Consensus 2 ~~~~~ki~~~aPGKv~L~GEh~v~~G~~ai~~aI~~~~~~~~~~~~~~~i~i~~~~~~~~~-----~~~----------- 65 (324) |..|. +.++|||||+|||||+||.|+.||++|||+++++.+++++++.+++.+...+... +++ T Consensus 61 g~~P~-~v~~APGRVnLiGEHtDY~gG~VLp~AI~~~~~v~v~~~~d~~~~i~s~~~~~~~~~~~~dl~~~~~~~~~~~~ 139 (548) T 2aj4_A 61 DAKPD-FVARSPGRVNLIGEHIDYCDFSVLPLAIDFDMLCAVKVLNEKNPSITLINADPKFAQRKFDLPLDGSYVTIDPS 139 (548) T ss_dssp SSCCS-EEEEEEEEEEEECCSCGGGTCCBEEEEEEEEEEEEEEEECCSSCEEEEEESSTTSCCEEEECCTTSCCCCCCTT T ss_pred CCCCC-EEEECCCCEEECCCCCCCCCCEEEEEEHCCCEEEEEEECCCCCEEEEEEECCCCCCEEEEECCCCCCCCCCCCC T ss_conf 89988-89987841785127540489835806850068999999679955999973487654268842676432324766 Q ss_pred HHHCCCHHHHHHHHHH----H-------HCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHH--CCCCCCCHHHH Q ss_conf 1201508999999999----7-------187787389998268753548874024566556777640--45666601455 Q gi|254781017|r 66 LAMFHPSFSFIIMAIN----H-------IKPSCGFDLKVISQLDSQLGLGSSAAITVAITAALLTLQ--YHKEPSPDEIL 132 (324) Q Consensus 66 ~~~~~~~~~~i~~~l~----~-------~~~~~g~~i~i~s~iP~g~GLGSSaa~~va~~~al~~~~--~~~~~~~~~i~ 132 (324) ...|..++..++..+. . ..+..||++.|.|+||.|+|||||||++||++.++..+. .+..++..+++ T Consensus 140 ~~~W~~Yv~g~~~~~~~~~~~~~~~~~~~~~~~G~~i~I~s~IP~gaGLSSSAAl~va~~~al~~~~~~~~~~~~~~~~a 219 (548) T 2aj4_A 140 VSDWSNYFKCGLHVAHSFLKKLAPERFASAPLAGLQVFCEGDVPTGSGLSSSAAFICAVALAVVKANMGPGYHMSKQNLM 219 (548) T ss_dssp SCCHHHHHHHHHHHHHHHHHHHCHHHHSSSCCCEEEEEEEECSCTTSSSCHHHHHHHHHHHHHHHHHHCTTCCCBHHHHH T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHH T ss_conf 54267799999999999998755664157888766999977877788855488999999999997311677764588887 Q ss_pred HHHHHHHHHHCCCCCC-HHHHHHHCCC---EEEEEECC-CEEEEEECC------CCCCEEECCCCCCHH----------- Q ss_conf 7888877652146887-5447766298---58998527-515673047------775267658417989----------- Q gi|254781017|r 133 TTAHAIVLKVQGISSG-IDLAASIHGG---LICYQMPK-YSIEKIDFI------FPIHLIYSGYKTPTA----------- 190 (324) Q Consensus 133 ~lA~~~E~~~~g~~sG-~D~~a~~~Gg---~i~~~~~~-~~~~~~~~~------~~l~l~~tg~~~~T~----------- 190 (324) ++++. |..+.|.+|| |||+++++|+ .+++++.+ ....+.+++ ..+++++|+++.++. T Consensus 220 ~~~~~-e~~~vG~~~G~mDQ~as~~g~~~~al~id~~~~~~~~~~~lp~~~~~~~~fvi~nS~v~~~k~~la~s~Yn~R~ 298 (548) T 2aj4_A 220 RITVV-AEHYVGVNNGGMDQAASVCGEEDHALYVEFKPQLKATPFKFPQLKNHEISFVIANTLVVSNKFETAPTNYNLRV 298 (548) T ss_dssp HHHTT-GGGGGTCCCCSHHHHHHHHCCTTCEEEEECSSSCEEEEECCCCCSSCEEEEEEEECCCCCCTTTTTTTTHHHHH T ss_pred HHHHH-HHHHCCCCCCHHHHHHHHCCCCCEEEEECCCCCCCEEECCCCCCCCCCCEEEEEECCCCCCCCCCCCCCHHHHH T ss_conf 87788-88754788846888998706678799711478763133257765556825887523555441002652012789 Q ss_pred -HHHHHHHHHHHHCC---------------CHH----------------------------------------------- Q ss_conf -99988899886082---------------348----------------------------------------------- Q gi|254781017|r 191 -QVLKKISYIEIEYP---------------EIN----------------------------------------------- 207 (324) Q Consensus 191 -~~v~~v~~~~~~~~---------------~~~----------------------------------------------- 207 (324) ++....+.+...++ .++ T Consensus 299 ~ec~~Aa~~l~~~~~~~~~~~~~~~~~~~~~Lrd~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 378 (548) T 2aj4_A 299 VEVTTAANVLAATYGVVLLSGKEGSSTNKGNLRDFMNVYYARYHNISTPWNGDIESGIERLTKMLVLVEESLANKKQGFS 378 (548) T ss_dssp HHHHHHHHHHHHHTTCCCC--------CCCCHHHHHHHHHHHHHCCCSCCCCCHHHHHHHHHHHHHHHHHHHGGGTTCBC T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC T ss_conf 99999999972110433112333343343205665555555420124431013567899999988766776652024577 Q ss_pred -------------HHH-----------------HHHHHHHC--CCCHHHHHHHCCCC-------HHHHHHHHHHHHHHHH Q ss_conf -------------999-----------------99998403--32078898730486-------4456899999899998 Q gi|254781017|r 208 -------------EIN-----------------QKIYALMG--KLSQISCQALRNKN-------LKVLAQAMNRQQGLLE 248 (324) Q Consensus 208 -------------~~~-----------------~~~~~~~~--~i~~~~~~al~~~d-------~~~l~~lm~~~~~~L~ 248 (324) ++. +.....+. ..+.++.++++++| +++||+|||++|.+|+ T Consensus 379 ~~~v~~~l~~~~~e~~~~~l~~~~~~~~~~~l~~Ra~Hvv~E~~RV~~a~~al~~~d~~~~~~~~~~lG~LmneSH~SL~ 458 (548) T 2aj4_A 379 VDDVAQSLNCSREEFTRDYLTTSPVRFQVLKLYQRAKHVYSESLRVLKAVKLMTTASFTADEDFFKQFGALMNESQASCD 458 (548) T ss_dssp HHHHHHHHTCCHHHHHHHHHSSSCCCCSCBCHHHHHHHHHHHHHHHHHHHHHHHC--CCSHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH T ss_conf 88998762434777766540023101002788899999999999999999999748943104599999999999999998 Q ss_pred H-HCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEEECCC---CCHHHHHHHHHHHHHCCC----------EEEEE Q ss_conf 6-167877999999999971994599726899754899984665---326899999999997797----------89994 Q gi|254781017|r 249 T-LGVSDSKLSEIVWKLREQPHIMASKISGSGLGDCVIALGKGD---LNSLPYQSVNCHMHAKGI----------DIVPI 314 (324) Q Consensus 249 ~-lgvs~~~l~~li~~~~~~~g~~~aklsGAG~GG~~i~l~~~~---~~~~~~~~~~~~~~~~g~----------~~~~~ 314 (324) + ++||||++|.|++.+++ .|++|+||||||||||+++|++.+ .-+.+++.+.+...+.++ .++.. T Consensus 459 ~~yevS~peLD~lv~~a~~-~Ga~GARlTGaGfGGc~vaLVp~~~~~~v~~~~~~v~~~y~~~~~~~~~~~~~~~~~f~~ 537 (548) T 2aj4_A 459 KLYECSCPEIDKICSIALS-NGSYGSRLTGAGWGGCTVHLVPGGPNGNIEKVKEALANEFYKVKYPKITDAELENAIIVS 537 (548) T ss_dssp HTTCCCCHHHHHHHHHHHH-TTCSEEEECTTCSSSEEEEEEEESTTCCHHHHHHHHHHHTHHHHCTTCCHHHHHHHEEEE T ss_pred HHHCCCCHHHHHHHHHHHH-CCCEEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEE T ss_conf 7015999999999999987-799089985687610699995583266799999999999987228865434677608997 Q ss_pred ECCCCCCCCC Q ss_conf 1454564459 Q gi|254781017|r 315 TPSHSTSLYR 324 (324) Q Consensus 315 ~~~~~~~~~~ 324 (324) .|..|..+++ T Consensus 538 ~P~~GA~~~~ 547 (548) T 2aj4_A 538 KPALGSCLYE 547 (548) T ss_dssp CCCCCSEEEE T ss_pred CCCCCCEEEE T ss_conf 6888856875 No 14 >3hul_A HSK, HK, homoserine kinase; structural genomics, putative homoserine kinase, THRB, amino-acid biosynthesis, ATP-binding, cytoplasm; 2.19A {Listeria monocytogenes} Probab=99.97 E-value=4e-29 Score=202.07 Aligned_cols=283 Identities=15% Similarity=0.156 Sum_probs=194.7 Q ss_pred EEEEECCEEEEEECCCEEECCCEEEEEEECCEEEEEEEECCCCEEEEEECCCCCCCCCCHHHCCCHHHHHHHHHHHHCCC Q ss_conf 89997170499974353308942898776772899999868984999953644446566120150899999999971877 Q gi|254781017|r 7 KICVSAPGSLVLMGEHGVLHGHAALVFAINKRVILYLTLRKDRLINIDSSLGQYCGSLDLAMFHPSFSFIIMAINHIKPS 86 (324) Q Consensus 7 ki~~~aPGKv~L~GEh~v~~G~~ai~~aI~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~ 86 (324) +|.||+|+++--.|- |+.+|.+|||+|.++++++.++.... .... ...++.+..+.. +....+.+... T Consensus 2 ~~~v~~Pat~aN~g~-----Gfd~lg~Ai~l~d~v~v~~~~~~~~i-~~~~---~~~~~~d~~nli---~~~~~~~~~~~ 69 (298) T 3hul_A 2 SLRIRVPATTANLGP-----GFDSCGLALTLYLTLDIGAEADSWYI-EHNI---GGGIPHDETNVI---IETALNLAPNL 69 (298) T ss_dssp CEEEEEEEEEESCTT-----CTTTEEEEEEEEEEEEEEEECSSCEE-ECCC---CTTCCSSTTSHH---HHHHHHHCTTC T ss_pred EEEEEEEEEHHHCCC-----CHHHEEEECCCCEEEEEEECCCCEEE-EECC---CCCCCCCCHHHH---HHHHHHHHCCC T ss_conf 799996017565072-----72551560108859999983895599-9378---677999952699---99999863437 Q ss_pred CCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCEEEEEE-C Q ss_conf 873899982687535488740245665567776404566660145578888776521468875447766298589985-2 Q gi|254781017|r 87 CGFDLKVISQLDSQLGLGSSAAITVAITAALLTLQYHKEPSPDEILTTAHAIVLKVQGISSGIDLAASIHGGLICYQM-P 165 (324) Q Consensus 87 ~g~~i~i~s~iP~g~GLGSSaa~~va~~~al~~~~~~~~~~~~~i~~lA~~~E~~~~g~~sG~D~~a~~~Gg~i~~~~-~ 165 (324) .+++|+++++||+++|||||||.++|++.+++++ ++..++.+++.+++...+ +++.|..++.+||...+.. . T Consensus 70 ~~~~I~i~k~IP~gaGLGssSa~aaA~l~al~~~-~~~~l~~~~l~~~~~~~~------~~~~~~~~~~~~g~~~~~~~~ 142 (298) T 3hul_A 70 TPHHLVMTCDIPPARGLGSSSAAVVAGIELANTL-AELNLSKEEKVRIAAEIE------GHPDNVAPAVLGNWVVGAKLD 142 (298) T ss_dssp CCEEEEEEECSCTTSSSSHHHHHHHHHHHHHHHH-TTCCCCHHHHHHHHHHHH------SCSTTHHHHHHCSEEEEEEET T ss_pred CCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHH-HCCCCCHHHHHHHHHHCC------CCCCCCCEEEECCCEEEEECC T ss_conf 8837999726877668785288999999999997-287777678898864345------567887639975836999658 Q ss_pred CCEEEEEECC--CCCCEEECCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHH Q ss_conf 7515673047--77526765841798999988899886082348999999984033207889873048644568999998 Q gi|254781017|r 166 KYSIEKIDFI--FPIHLIYSGYKTPTAQVLKKISYIEIEYPEINEINQKIYALMGKLSQISCQALRNKNLKVLAQAMNRQ 243 (324) Q Consensus 166 ~~~~~~~~~~--~~l~l~~tg~~~~T~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~al~~~d~~~l~~lm~~~ 243 (324) ...+..++.+ ..++++.++...+|++..+.+ .+.....+.... .........++.++|++.++.+++.. T Consensus 143 ~~~~~~~~~~~~~~~vi~~~~~~~st~~~~~~~----~~~~~~~~~~~~-----~~~~~~~~~~~~~~d~~~~~~~~~~~ 213 (298) T 3hul_A 143 GEDFYVRHLFPDCALIAFIPKAELLTSESRGVL----PDTLPFKEAVQA-----SSIANVMIAAILRNDMTLAGEMMERD 213 (298) T ss_dssp TEEEEEEECCC-CEEEEEECCCCCC------------CCEEEHHHHHHH-----HHHHHHHHHHHTTTCHHHHHHHHTCC T ss_pred CCEEEEECCCCCCCEEEEECCCCCCCCEEEEEC----CCCCCHHHHHHH-----HHHHHHHHHHHHCCCHHHHHHHHHHH T ss_conf 856899336876417999468345511212201----023665666554-----44567888766338899998653101 Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCC--CEEEEEEC-CCCC Q ss_conf 99998616787799999999997199459972689975489998466532689999999999779--78999414-5456 Q gi|254781017|r 244 QGLLETLGVSDSKLSEIVWKLREQPHIMASKISGSGLGDCVIALGKGDLNSLPYQSVNCHMHAKG--IDIVPITP-SHST 320 (324) Q Consensus 244 ~~~L~~lgvs~~~l~~li~~~~~~~g~~~aklsGAG~GG~~i~l~~~~~~~~~~~~~~~~~~~~g--~~~~~~~~-~~~~ 320 (324) +.........+|+++++++.++ ..|+++++|||+|+ |+++|++++. .+++.+++.+.| ++++.+++ ..|. T Consensus 214 ~~~~~~~~~l~p~l~~l~~~~~-~~Ga~ga~lSGsGp--tvfal~~~~~----a~~v~~~l~~~~~~~~v~~~~~~~~Ga 286 (298) T 3hul_A 214 LWHEKYRSQLVPHLAQIRDVAK-NQGAYAACLSGAGP--TVLVFAPRNL----ANKLQTSLQTLEIDADVLLLDVEGSGA 286 (298) T ss_dssp CC-----CTTGGGHHHHHHHHH-TTTCCEEEECTTSS--CEEEEECGGG----HHHHHHHHHTTCCSSEEEEEEBCCCCC T ss_pred CCCHHHHHHHCHHHHHHHHHHH-HCCCCEEEEECCCC--CEEEEECHHH----HHHHHHHHHHCCCCEEEEEEEECCCCE T ss_conf 0006789885615899999998-49993899945015--1799977999----999999998659986999900269956 Q ss_pred CCCC Q ss_conf 4459 Q gi|254781017|r 321 SLYR 324 (324) Q Consensus 321 ~~~~ 324 (324) +|+| T Consensus 287 ~V~~ 290 (298) T 3hul_A 287 EVFR 290 (298) T ss_dssp EEEE T ss_pred EEEE T ss_conf 9998 No 15 >1h72_C HK, homoserine kinase; transferase, threonine biosynthesis; HET: ANP; 1.8A {Methanococcus jannaschii} SCOP: d.14.1.5 d.58.26.1 PDB: 1fwl_A 1fwk_A* 1h73_A* 1h74_A* Probab=99.97 E-value=1.5e-28 Score=198.53 Aligned_cols=289 Identities=17% Similarity=0.166 Sum_probs=198.3 Q ss_pred CEEEEECCEEEEEECCCEEECCCEEEEEEEC-CEEEEEEEECCCCEEEEEECCCCCCCCCCHHHCCCHH-HHHHHHHHHH Q ss_conf 7899971704999743533089428987767-7289999986898499995364444656612015089-9999999971 Q gi|254781017|r 6 HKICVSAPGSLVLMGEHGVLHGHAALVFAIN-KRVILYLTLRKDRLINIDSSLGQYCGSLDLAMFHPSF-SFIIMAINHI 83 (324) Q Consensus 6 ~ki~~~aPGKv~L~GEh~v~~G~~ai~~aI~-~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~-~~i~~~l~~~ 83 (324) .||.+|||+++--+|- |+.+|.+|++ .|.+++++++++..+.+...... ++.+...... .......+.. T Consensus 1 m~v~v~~Pat~aNlg~-----GfDslglAl~~~~d~i~v~~~~~~~i~i~~~~~~----~~~~~~~nl~~~a~~~~~~~~ 71 (296) T 1h72_C 1 MKVRVKAPCTSANLGV-----GFDVFGLCLKEPYDVIEVEAIDDKEIIIEVDDKN----IPTDPDKNVAGIVAKKMIDDF 71 (296) T ss_dssp CEEEEEEEEEEECTGG-----GTTTEEEEEEEEEEEEEEEEESSSSEEEEESCTT----SCCCTTTSHHHHHHHHHHHHT T ss_pred CEEEEEEEECHHHCCC-----CCCHHHEEECCCCCEEEEEECCCCCEEEEECCCC----CCCCHHHHHHHHHHHHHHHHH T ss_conf 9799997540776676-----6214224006786689999968993999977877----988735429999999999986 Q ss_pred CCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCEEEEE Q ss_conf 87787389998268753548874024566556777640456666014557888877652146887544776629858998 Q gi|254781017|r 84 KPSCGFDLKVISQLDSQLGLGSSAAITVAITAALLTLQYHKEPSPDEILTTAHAIVLKVQGISSGIDLAASIHGGLICYQ 163 (324) Q Consensus 84 ~~~~g~~i~i~s~iP~g~GLGSSaa~~va~~~al~~~~~~~~~~~~~i~~lA~~~E~~~~g~~sG~D~~a~~~Gg~i~~~ 163 (324) ....+++|+++++||.++|||||||.++|++++++.+ ++.+++.+++.+++...|...+|.++|.|...+.+||...+. T Consensus 72 ~~~~~~~I~i~k~IP~~aGLGssSa~aaA~l~al~~~-~~l~l~~~el~~ia~~~~~~~~g~~~~~~~~~~~~gG~~~~~ 150 (296) T 1h72_C 72 NIGKGVKITIKKGVKAGSGLGSSAASSAGTAYAINEL-FKLNLDKLKLVDYASYGELASSGAKHADNVAPAIFGGFTMVT 150 (296) T ss_dssp TCCCEEEEEEECSSCTTSSSCHHHHHHHHHHHHHHHH-TTCCCCHHHHHHHHHHHHHHHHSSCCCTTHHHHHHCSEEEEE T ss_pred CCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCEEEEC T ss_conf 8999859999817987567686378999999999985-279989899999999753530487654343138975712304 Q ss_pred ECCCE-EEEEEC--CCCCCEEECCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHH Q ss_conf 52751-567304--777526765841798999988899886082348999999984033207889873048644568999 Q gi|254781017|r 164 MPKYS-IEKIDF--IFPIHLIYSGYKTPTAQVLKKISYIEIEYPEINEINQKIYALMGKLSQISCQALRNKNLKVLAQAM 240 (324) Q Consensus 164 ~~~~~-~~~~~~--~~~l~l~~tg~~~~T~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~al~~~d~~~l~~lm 240 (324) ..... ...... .+.++++..+...+|.+... .....+...+...... .......++..++.+.+...+ T Consensus 151 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~t~~~~~----~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~ 221 (296) T 1h72_C 151 NYEPLEVLHIPIDFKLDILIAIPNISINTKEARE----ILPKAVGLKDLVNNVG-----KACGMVYALYNKDKSLFGRYM 221 (296) T ss_dssp ETTTTEEEEECCCSCCCEEEECCSSCCCHHHHHH----TSCSCCCHHHHHHHHH-----HHHHHHHHHHTTCHHHHHHHH T ss_pred CCCCEEEEECCCCCCCEEEEECCCCCCCHHHHHH----HHHCCCCHHHHHHHHH-----HHHHHHHHHHCCCHHHHHHHH T ss_conf 8873034412687660799945884200287777----7640233355665444-----356789988537787888766 Q ss_pred HHHHHHHHHH-CCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEECCCC Q ss_conf 9989999861-678779999999999719945997268997548999846653268999999999977978999414545 Q gi|254781017|r 241 NRQQGLLETL-GVSDSKLSEIVWKLREQPHIMASKISGSGLGDCVIALGKGDLNSLPYQSVNCHMHAKGIDIVPITPSHS 319 (324) Q Consensus 241 ~~~~~~L~~l-gvs~~~l~~li~~~~~~~g~~~aklsGAG~GG~~i~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 319 (324) ... ..++.. ....|++.++++.+ ..|+++++|||+|+ |+++|++++.. +++.+.+.+..-+.+...+..| T Consensus 222 ~~~-~~l~~~~~~~~p~~~~i~~~l--~~ga~~a~mSGsGp--tvfal~~~~~~----~~i~~~l~~~~~~~i~~~~~~G 292 (296) T 1h72_C 222 MSD-KVIEPVRGKLIPNYFKIKEEV--KDKVYGITISGSGP--SIIAFPKEEFI----DEVENILRDYYENTIRTEVGKG 292 (296) T ss_dssp TTC-CSSHHHHHTTSTTHHHHHHHH--TTTEEEEEECTTSS--CEEEEECGGGH----HHHHHHHHHHCSCEEEECBCCC T ss_pred HHH-HHHHHHHHHHCHHHHHHHHHH--HCCCCEEEEECHHH--EEEEEECHHHH----HHHHHHHHHHCCCEEEEEECCC T ss_conf 422-029999987191799999999--87997899987357--59999777799----9999999985482399887996 Q ss_pred CCC Q ss_conf 644 Q gi|254781017|r 320 TSL 322 (324) Q Consensus 320 ~~~ 322 (324) .+| T Consensus 293 ~~v 295 (296) T 1h72_C 293 VEV 295 (296) T ss_dssp CEE T ss_pred EEE T ss_conf 388 No 16 >2v8p_A 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; nucleotide-binding, isoprene biosynthesis, transferase, ATP-binding, non-mevalonate; HET: CDP ADP; 2.1A {Aquifex aeolicus} PDB: 2v2v_A* 2v2q_A* 2v34_A* 2v2z_A* 2vf3_A* Probab=99.93 E-value=9.1e-24 Score=168.21 Aligned_cols=259 Identities=15% Similarity=0.142 Sum_probs=172.7 Q ss_pred CCCCCEEEEECCEEEEEE---------CCCEEECCCEEEEEEECCEEEEEEEECCCCEEEEEECCCCCCCCCCHHHCCCH Q ss_conf 988878999717049997---------43533089428987767728999998689849999536444465661201508 Q gi|254781017|r 2 GQCLHKICVSAPGSLVLM---------GEHGVLHGHAALVFAINKRVILYLTLRKDRLINIDSSLGQYCGSLDLAMFHPS 72 (324) Q Consensus 2 ~~~~~ki~~~aPGKv~L~---------GEh~v~~G~~ai~~aI~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~ 72 (324) |-.|.+ ++||+||||+ |.|-. ..+-.+||++..+++++.. +.+.... . ++ ...+-. T Consensus 1 ~~~mi~--~~apAKiNL~L~i~~kr~dGyH~i----~s~~~~i~l~D~i~i~~~~---~~~~~~~-~----~~-~~~Nli 65 (271) T 2v8p_A 1 GSHMIK--VLSPAKINLGLWVLGRLPSGYHEI----LTLYQEIPFYDEIYIREGV---LRVETNI-G----IP-QEENLV 65 (271) T ss_dssp -CCCEE--EEEEEEEEEEEEEEEECTTSCEEE----EEEEEEEEEEEEEEEEESS---CEEEESS-C----CC-TTTCHH T ss_pred CCCEEE--EEEEEEEEEEEEECCCCCCCCCEE----EEEEEEECCCCEEEEEECC---CEEECCC-C----CC-CCHHHH T ss_conf 995199--984168975455178589997725----7899992687399999687---0776888-9----99-631199 Q ss_pred HHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHH Q ss_conf 99999999971877873899982687535488740245665567776404566660145578888776521468875447 Q gi|254781017|r 73 FSFIIMAINHIKPSCGFDLKVISQLDSQLGLGSSAAITVAITAALLTLQYHKEPSPDEILTTAHAIVLKVQGISSGIDLA 152 (324) Q Consensus 73 ~~~i~~~l~~~~~~~g~~i~i~s~iP~g~GLGSSaa~~va~~~al~~~~~~~~~~~~~i~~lA~~~E~~~~g~~sG~D~~ 152 (324) .+......+......|++|.++++||+++|||||||.++|.+.+++.+ ++.+++.+++.++|..+ |.|+. T Consensus 66 ~ka~~~~~~~~~~~~~~~I~i~K~IP~~~GLGggSs~aaa~l~~ln~l-~~~~ls~~el~~la~~i---------g~dvp 135 (271) T 2v8p_A 66 YKGLREFERITGIEINYSIFIQKNIPPGAGLGGGSSNLAVVLKKVNEL-LGSPLSEEELRELVGSI---------SADAP 135 (271) T ss_dssp HHHHHHHHHHHCCCCCEEEEEECCSCTTSSSCHHHHHHHHHHHHHHHH-TTCCSCHHHHHHHHHHH---------CTTTG T ss_pred HHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHH-HCCCCCHHHHHHHHCCC---------CCCCC T ss_conf 999999779759998748999769988787774327899999999985-06774236677653024---------78878 Q ss_pred HHHCCCEEEEEECCCEEEEEECC--CCCCEEECCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHCC Q ss_conf 76629858998527515673047--7752676584179899998889988608234899999998403320788987304 Q gi|254781017|r 153 ASIHGGLICYQMPKYSIEKIDFI--FPIHLIYSGYKTPTAQVLKKISYIEIEYPEINEINQKIYALMGKLSQISCQALRN 230 (324) Q Consensus 153 a~~~Gg~i~~~~~~~~~~~~~~~--~~l~l~~tg~~~~T~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~al~~ 230 (324) .+.+|+..+.......+.+++.+ ..+++++++...+|+++.+.++ .......+.. .....++.. T Consensus 136 ~fl~g~~~~~~g~Ge~i~~~~~~~~~~~vlv~P~~~~sT~~a~~~l~---~~~~~~~~~~-----------~~~~~~l~~ 201 (271) T 2v8p_A 136 FFLLGKSAIGRGKGEVLEPVETEISGKITLVIPQVSSSTGRVYSSLR---EEHFVTPEYA-----------EEKIQRIIS 201 (271) T ss_dssp GGGTCSEEEEETTTTEEEECCCCCCSEEEEEECSSCCCHHHHHHTCC---TTSCCCHHHH-----------HHHHHHHHT T ss_pred CCCCCCCCCCCCCCCEEEEEEECCCCCEEEEECCCCCCCHHHHHHHH---HHHCCCCHHH-----------HHHHHHHHH T ss_conf 43368760004885379997615775279981565775178997651---3303452005-----------889998875 Q ss_pred CCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCE Q ss_conf 86445689999989999861678779999999999719945997268997548999846653268999999999977978 Q gi|254781017|r 231 KNLKVLAQAMNRQQGLLETLGVSDSKLSEIVWKLREQPHIMASKISGSGLGDCVIALGKGDLNSLPYQSVNCHMHAKGID 310 (324) Q Consensus 231 ~d~~~l~~lm~~~~~~L~~lgvs~~~l~~li~~~~~~~g~~~aklsGAG~GG~~i~l~~~~~~~~~~~~~~~~~~~~g~~ 310 (324) ++++.+...+... ..++ .|+++++.+.+ +.. ++++.|||+|+ +++++++.+.+.+.. ....|++ T Consensus 202 ~~~~~~~n~l~~~---~~~l---~P~i~~i~~~l-~~~-~~~~~lSGSGs--tvfal~~~~~~~~~a------~k~~~w~ 265 (271) T 2v8p_A 202 GEVEEIENVLGDI---AREL---YPEINEVYRFV-EYL-GFKPFVSGSGS--TVYFFGGASEELKKA------AKMRGWK 265 (271) T ss_dssp TCGGGCCBHHHHH---HHHH---CHHHHHHHHHH-HHT-TCCCEECTTSS--CEEESSCCCHHHHHH------HHHHTCE T ss_pred HHHHHHHHHHHHH---HHHH---CHHHHHHHHHH-HHC-CCCEEEECCCH--HHEEEECCHHHHHHH------HHCCCCE T ss_conf 3189999888889---9986---90999999999-838-99889978443--216898999999998------7407998 Q ss_pred EEEEE Q ss_conf 99941 Q gi|254781017|r 311 IVPIT 315 (324) Q Consensus 311 ~~~~~ 315 (324) ++.++ T Consensus 266 v~~~~ 270 (271) T 2v8p_A 266 VVELE 270 (271) T ss_dssp EEEEE T ss_pred EEEEE T ss_conf 99988 No 17 >1uek_A 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase; non-mevalonate pathway, GHMP superfamily; 1.70A {Thermus thermophilus} SCOP: d.14.1.5 d.58.26.5 Probab=99.90 E-value=3.9e-21 Score=151.53 Aligned_cols=258 Identities=14% Similarity=0.141 Sum_probs=161.7 Q ss_pred EEECCEEEEEECC----CEEECCC---EEEEEEECCEEEEEEEECCCCEEEEEECCCCCCCCCCHHHCCCHHHHHHHHHH Q ss_conf 9971704999743----5330894---28987767728999998689849999536444465661201508999999999 Q gi|254781017|r 9 CVSAPGSLVLMGE----HGVLHGH---AALVFAINKRVILYLTLRKDRLINIDSSLGQYCGSLDLAMFHPSFSFIIMAIN 81 (324) Q Consensus 9 ~~~aPGKv~L~GE----h~v~~G~---~ai~~aI~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~i~~~l~ 81 (324) +.-||+||||+=+ .. .|+ ..+-.+||++..+++++.+++ +.++.. .+..+-..+.+....+ T Consensus 2 ~~~spAKINL~L~i~~kr~--dGyH~i~s~~~~i~l~D~i~i~~~~~~-~~~~~p---------~~~~Nlv~ka~~~~~~ 69 (275) T 1uek_A 2 ERLAPAKVNLGLSVRFRRE--DGYHELHTLFAPFSLADRLVVEPVSSG-LHFQGP---------YGRENLAYRAASLYLE 69 (275) T ss_dssp EEEEEEEEEEEEEEEEECT--TSSEEEEEEEEEEEEEEEEEEEEESSC-EEEEST---------TGGGSHHHHHHHHHHH T ss_pred CEECCCEECCCEEECCCCC--CCCCEEEEEEEEECCCEEEEEEECCCC-CEECCC---------CCCCHHHHHHHHHHHH T ss_conf 6522520732500078589--997523689999367539999987899-478689---------9842389999999888 Q ss_pred HHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCEEE Q ss_conf 71877873899982687535488740245665567776404566660145578888776521468875447766298589 Q gi|254781017|r 82 HIKPSCGFDLKVISQLDSQLGLGSSAAITVAITAALLTLQYHKEPSPDEILTTAHAIVLKVQGISSGIDLAASIHGGLIC 161 (324) Q Consensus 82 ~~~~~~g~~i~i~s~iP~g~GLGSSaa~~va~~~al~~~~~~~~~~~~~i~~lA~~~E~~~~g~~sG~D~~a~~~Gg~i~ 161 (324) ......+++|+++++||+++|||||||.++|++.+++++. ... .++.++|..+ |.|+.++.+|+..+ T Consensus 70 ~~~~~~~~~I~i~K~IP~gaGLGggSs~aaa~l~~~~~~~-~~~---~~l~~~a~~l---------GsDvp~fl~g~~a~ 136 (275) T 1uek_A 70 AAGQPGGVRILLEKRIPEGAGLGGGSSDAAQVLLALQALY-PAE---VDLFALARTL---------GADVPFFLLGRGAE 136 (275) T ss_dssp HTTCCCEEEEEEECCSCSSSSSCHHHHHHHHHHHHHHHHS-CSC---CCHHHHHHHH---------CTTHHHHHHCSEEE T ss_pred HHCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHC-CCC---HHHHHHHHHH---------CCCCCCCCCCCCCE T ss_conf 6289777699998589976767735799999999987643-540---4799999972---------87765311686631 Q ss_pred EEECCCEEEEEECC-CCCCEEECCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHH Q ss_conf 98527515673047-77526765841798999988899886082348999999984033207889873048644568999 Q gi|254781017|r 162 YQMPKYSIEKIDFI-FPIHLIYSGYKTPTAQVLKKISYIEIEYPEINEINQKIYALMGKLSQISCQALRNKNLKVLAQAM 240 (324) Q Consensus 162 ~~~~~~~~~~~~~~-~~l~l~~tg~~~~T~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~al~~~d~~~l~~lm 240 (324) .......+.+++.+ ..++++..+...+|+++.+.+.......... .+...+++..++...+..-+ T Consensus 137 ~~g~Ge~l~~~~~~~~~~vlv~P~~~iST~~ay~~~~~~~~~~~~~--------------~~~~~~~l~~~~~~~~~NdL 202 (275) T 1uek_A 137 ARGVGERLKPLALPPVPAVVFFPGLRVPTPLVYRAVRPEDFGPDLP--------------VEAILEALARGEEPPYWNSL 202 (275) T ss_dssp EETTTTEEEEECCCCEEEEEEECCCCCCHHHHHHTCCGGGCCCCCC--------------HHHHHHHHHHTCCCSCCBTT T ss_pred ECCCCCEEEEECCCCCCEEEECCCCCCCHHHHHHHHHHHHCCCCHH--------------HHHHHHHHHHHHHHHHHCCH T ss_conf 1256420267114654225514776777699998742431585124--------------78899987642056654554 Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCC-CEEEEEECC Q ss_conf 99899998616787799999999997199459972689975489998466532689999999999779-789994145 Q gi|254781017|r 241 NRQQGLLETLGVSDSKLSEIVWKLREQPHIMASKISGSGLGDCVIALGKGDLNSLPYQSVNCHMHAKG-IDIVPITPS 317 (324) Q Consensus 241 ~~~~~~L~~lgvs~~~l~~li~~~~~~~g~~~aklsGAG~GG~~i~l~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~ 317 (324) ..... ++ .|+++++.+.+.+ .|++++.|||+|+ |+++|++++.++ +++.+.+.+.+ +|.-.+.-. T Consensus 203 e~~~~---~l---~P~i~~i~~~l~~-~ga~~~~lSGSGs--t~fal~~~~~~a---~~~~~~l~~~~~~W~~~l~~~ 268 (275) T 1uek_A 203 EGPAF---RL---FPELKEVRGRMRA-LGLRGVLMSGSGS--AFFGLAEGPDHA---RRAAEALRAWGRAWAGTLGGG 268 (275) T ss_dssp HHHHH---HH---CTHHHHHHHHHHH-TTCEEEEECTTSS--CEEEECSSHHHH---HHHHHHHTTTSEEEEEEECCC T ss_pred HHHHH---HH---CHHHHHHHHHHHH-CCCCEEEEECHHH--CEEEEECCHHHH---HHHHHHHHHCCCCEEEEECCC T ss_conf 67998---86---8599999999996-7998699988412--468998999999---999999877599779994314 No 18 >2hk2_A Diphosphomevalonate decarboxylase; mevalonate diphosphate decarboxylase, lyase; 2.30A {Staphylococcus aureus} PDB: 2hk3_A Probab=99.89 E-value=3.8e-21 Score=151.65 Aligned_cols=299 Identities=11% Similarity=0.029 Sum_probs=177.7 Q ss_pred CCCCCCEEEEECCEEEEEE---CCCEEEC---CCEEEEEEEC-CEEEEEEEECCCC-EEEEEECCCCCCCCCCHHHCCCH Q ss_conf 9988878999717049997---4353308---9428987767-7289999986898-49999536444465661201508 Q gi|254781017|r 1 MGQCLHKICVSAPGSLVLM---GEHGVLH---GHAALVFAIN-KRVILYLTLRKDR-LINIDSSLGQYCGSLDLAMFHPS 72 (324) Q Consensus 1 ~~~~~~ki~~~aPGKv~L~---GEh~v~~---G~~ai~~aI~-~~~~~~~~~~~~~-~i~i~~~~~~~~~~~~~~~~~~~ 72 (324) |=|.|+..+++||-.+-|+ |-+-.-+ -.+.|++++| .+++.+++.+++. ...+....... +....... T Consensus 2 ~~~~~~~~~a~a~~nialiKYwGk~d~~~~~P~n~SiS~tl~~~~t~t~v~~~~~~~~d~~~~ng~~~----~~~~~~~i 77 (331) T 2hk2_A 2 MLEMIKSGKARAHTNIALIKYWGKKDEALIIPMNNSISVTLEKFYTETKVTFNDQLTQDQFWLNGEKV----SGKELEKI 77 (331) T ss_dssp HHHHCEEEEEEEEEEEEEECCCCEEETTTTEESSCEEEEEEEEEEEEEEEEEETTCCSCEEEETTEEE----CTHHHHHH T ss_pred HHHCCCCEEEECCCEEEEEEECCCCCCCCCCCCCCEEEEECCCCCEEEEEEEECCCCCEEEEECCEEC----CCHHHHHH T ss_conf 24415523998765068885227567777788998776897788017999980698851899999538----82688999 Q ss_pred HHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHH Q ss_conf 99999999971877873899982687535488740245665567776404566660145578888776521468875447 Q gi|254781017|r 73 FSFIIMAINHIKPSCGFDLKVISQLDSQLGLGSSAAITVAITAALLTLQYHKEPSPDEILTTAHAIVLKVQGISSGIDLA 152 (324) Q Consensus 73 ~~~i~~~l~~~~~~~g~~i~i~s~iP~g~GLGSSaa~~va~~~al~~~~~~~~~~~~~i~~lA~~~E~~~~g~~sG~D~~ 152 (324) .+++...-+......+++|++.+++|.++|||||||..+|++.|++.+ ++.+++.+++.++|...| | |.+ T Consensus 78 ~~~~~~~r~~~~~~~~~~I~s~n~iP~~~GLgSSAa~~aA~~~a~~~~-~~~~l~~~el~~lA~~gs--------G-s~~ 147 (331) T 2hk2_A 78 SKYMDIVRNRAGIDWYAEIESDNFVPTAAGLASSASAYAALAAACNQA-LDMQLSDKDLSRLARIGS--------G-SAS 147 (331) T ss_dssp HHHHHHHHHHHTCCCEEEEEEEEESCGGGTCCCHHHHHHHHHHHHHHH-TTCCCCHHHHHHHHHTTC--------G-GGG T ss_pred HHHHHHHHHHCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHH-HCCCCCHHHHHHHHHHCC--------C-CCC T ss_conf 999999998619987479999736875333257899999999999876-205799899999976428--------7-621 Q ss_pred HHHCCCEEEEEECCCE--E--EEEEC-----CCCCCEEECCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHH Q ss_conf 7662985899852751--5--67304-----7775267658417989999888998860823489999999840332078 Q gi|254781017|r 153 ASIHGGLICYQMPKYS--I--EKIDF-----IFPIHLIYSGYKTPTAQVLKKISYIEIEYPEINEINQKIYALMGKLSQI 223 (324) Q Consensus 153 a~~~Gg~i~~~~~~~~--~--~~~~~-----~~~l~l~~tg~~~~T~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~i~~~ 223 (324) .|.|||++.+...... . .++.. ....+++.......|....+......+..|...++.+... ..... T Consensus 148 ~si~GG~v~~~~~~~~~~~~~~~l~~~~~~~~~~~vi~~~~~~~k~~~s~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 223 (331) T 2hk2_A 148 RSIYGGFAEWEKGYSDETSYAVPLESNHFEDDLAMIFVVINQHSKKVPSRYGMSLTRNTSRFYQYWLDHID----EDLAE 223 (331) T ss_dssp GGGSSSEEEEECCSSTTTCEEEECCCTTGGGGEEEEEECCCCSSCCCCHHHHHHHHHHHCTTHHHHHHHHH----HHHHH T ss_pred CCEECCEEEEECCCCCCCCEEEEEECCCCCCCCEEEEEECCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHH----HHHHH T ss_conf 01168766774478876633555404667875238999378545532455420001146608999998756----77999 Q ss_pred HHHHHCCCCHHHHHHHHHHH----HHHHHH--HC-----CCCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEEECCCC Q ss_conf 89873048644568999998----999986--16-----78779999999999719945997268997548999846653 Q gi|254781017|r 224 SCQALRNKNLKVLAQAMNRQ----QGLLET--LG-----VSDSKLSEIVWKLREQPHIMASKISGSGLGDCVIALGKGDL 292 (324) Q Consensus 224 ~~~al~~~d~~~l~~lm~~~----~~~L~~--lg-----vs~~~l~~li~~~~~~~g~~~aklsGAG~GG~~i~l~~~~~ 292 (324) ...++.++|++.|++++... |..+.. .. ..++++.++++.+++ .|+.++-++|||+ .+++|++++. T Consensus 224 l~~al~~~D~~~l~~~~e~d~~~~h~~~~~~~~~~~~~~~~t~~i~~~i~~~r~-~G~~~~~~sgAGP--tv~~l~~~~~ 300 (331) T 2hk2_A 224 AKAAIQDKDFKRLGEVIEENGLRMHATNLGSTPPFTYLVQESYDVMALVHECRE-AGYPCYFTMDAGP--NVKILVEKKN 300 (331) T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSSSCCCSCCHHHHHHHHHHHHHHH-TTCCEEEECCSSS--CEEEEEEHHH T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHHHH-CCCCEEEEECCCH--HEEEEECHHH T ss_conf 999987699999999998768877998753478611004205999999999985-8984999956763--4499987868 Q ss_pred CHHHHHHHHHHHHHCCCEEEEEEC-CCCCCC Q ss_conf 268999999999977978999414-545644 Q gi|254781017|r 293 NSLPYQSVNCHMHAKGIDIVPITP-SHSTSL 322 (324) Q Consensus 293 ~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~ 322 (324) .+++++.+..... ..+++.... ..|.++ T Consensus 301 ~~~v~~~l~~~f~--~~~~~i~~~~~~G~~i 329 (331) T 2hk2_A 301 KQQIIDKLLTQFD--NNQIIDSDIIATGIEI 329 (331) T ss_dssp HHHHHHHHTTTSC--GGGEEEEEBCCSCCEE T ss_pred HHHHHHHHHHHCC--CCEEEEECCCCCCCEE T ss_conf 9999999996499--7629996367988875 No 19 >2ww4_A 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; non-mevalonate pathway, isoprenoid biosynthesis, transferase; HET: ADP; 2.00A {Escherichia coli} PDB: 1oj4_A* Probab=99.88 E-value=6.8e-21 Score=150.01 Aligned_cols=260 Identities=15% Similarity=0.159 Sum_probs=164.0 Q ss_pred EEECCEEEEEEC----CCEEECCC---EEEEEEECCEEEEEEEECCCCEEEEEECCCCCCCCCCHHHCCCHHHHHHHHHH Q ss_conf 997170499974----35330894---28987767728999998689849999536444465661201508999999999 Q gi|254781017|r 9 CVSAPGSLVLMG----EHGVLHGH---AALVFAINKRVILYLTLRKDRLINIDSSLGQYCGSLDLAMFHPSFSFIIMAIN 81 (324) Q Consensus 9 ~~~aPGKv~L~G----Eh~v~~G~---~ai~~aI~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~i~~~l~ 81 (324) .--||+||||+= ... .|+ ..+-..||++..++++++++..+.+........ ...+........+..... T Consensus 4 ~~~aPAKiNL~L~V~~kr~--dGyH~l~s~~~~i~L~D~I~i~~~~~~~i~i~~~~~~~~--~~~n~~~ka~~~l~~~~~ 79 (283) T 2ww4_A 4 QWPSPAKLNLFLYITGQRA--DGYHTLQTLFQFLDYGDTISIELRDDGDIRLLTPVEGVE--HEDNLIVRAARLLMKTAA 79 (283) T ss_dssp EEEEEEEEEEEEEEEEECT--TSCEEEEEEEEEEEEEEEEEEEEESSSCEEECSCBTTBC--GGGSHHHHHHHHHHHHHH T ss_pred CCCCCCEEECCEEECCCCC--CCCCEEEEEEEEECCCCEEEEEECCCCCEEEECCCCCCC--CCCCHHHHHHHHHHHHHH T ss_conf 6587023706631088799--997503678897078859999998999889970776577--310168999999999865 Q ss_pred H---HCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHCCC Q ss_conf 7---1877873899982687535488740245665567776404566660145578888776521468875447766298 Q gi|254781017|r 82 H---IKPSCGFDLKVISQLDSQLGLGSSAAITVAITAALLTLQYHKEPSPDEILTTAHAIVLKVQGISSGIDLAASIHGG 158 (324) Q Consensus 82 ~---~~~~~g~~i~i~s~iP~g~GLGSSaa~~va~~~al~~~~~~~~~~~~~i~~lA~~~E~~~~g~~sG~D~~a~~~Gg 158 (324) . +....|++|++..+||+++|||||||.++|++.+++++ ++.+++.+++.++|..+ |.|+..+.+|| T Consensus 80 ~~~~~~~~~~~~I~i~KnIP~gaGLGggSs~aAa~l~~ln~l-~~~~l~~~~l~~~a~~i---------gsDVp~~l~g~ 149 (283) T 2ww4_A 80 DSGRLPTGSGANISIDKRLPMGGGLGGGSSNAATVLVALNHL-WQCGLSMDELAEMGLTL---------GADVPVFVRGH 149 (283) T ss_dssp HTTCSCTTCEEEEEEECCCC-CTTSCHHHHHHHHHHHHHHHH-TTCCCCHHHHHHHHHTT---------CTTHHHHHHTB T ss_pred HHHHCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHH-HCCCCCHHHHHHHHHHC---------CCCCCCEECCC T ss_conf 543127789769999748987766775717999999999997-17883089999987321---------57874322486 Q ss_pred EEEEEECCCEEEEEEC-CCCCCEEECCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHH Q ss_conf 5899852751567304-777526765841798999988899886082348999999984033207889873048644568 Q gi|254781017|r 159 LICYQMPKYSIEKIDF-IFPIHLIYSGYKTPTAQVLKKISYIEIEYPEINEINQKIYALMGKLSQISCQALRNKNLKVLA 237 (324) Q Consensus 159 ~i~~~~~~~~~~~~~~-~~~l~l~~tg~~~~T~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~al~~~d~~~l~ 237 (324) ..+.......+.+++. ...+++++.+...+|+++-+.+..... .+. ...+....+...+|++... T Consensus 150 ~a~~~g~Ge~i~~~~~~~~~~vlv~P~~~iST~~~~~~~~~~~~-~~~-------------~~~~~~~~~~~~Ndle~~~ 215 (283) T 2ww4_A 150 AAFAEGVGEILTPVDPPEKWYLVAHPGVSIPTPVIFKDPELPRN-TPK-------------RSIETLLKCEFSNDCEVIA 215 (283) T ss_dssp CEEEETTTTEEEECCCCCCEEEEECCSCCCCHHHHHTCTTSCCC-CCC-------------CCHHHHHTSCCCBTTHHHH T ss_pred CEEECCCCCEEEECCCCCCCCEEECCCCCCCHHHHHHCCCCCCC-CCC-------------CCHHHHHHHHHHCCHHHHH T ss_conf 16743898676403565432067448978772999970001337-740-------------1399999765413189999 Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEECC Q ss_conf 99999899998616787799999999997199459972689975489998466532689999999999779789994145 Q gi|254781017|r 238 QAMNRQQGLLETLGVSDSKLSEIVWKLREQPHIMASKISGSGLGDCVIALGKGDLNSLPYQSVNCHMHAKGIDIVPITPS 317 (324) Q Consensus 238 ~lm~~~~~~L~~lgvs~~~l~~li~~~~~~~g~~~aklsGAG~GG~~i~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 317 (324) . ++ .|++.++.+.+.+. | ++.|||+|+ |++++++++.+++ ++.+.+. ..++.+-+++- T Consensus 216 ~----------~~---~p~i~~i~~~l~~~-g--~~~mSGSGs--tvFal~~~~~~a~---~~~~~~~-~~~~~~~~k~~ 273 (283) T 2ww4_A 216 R----------KR---FREVDAVLSWLLEY-A--PSRLTGTGA--CVFAEFDTESEAR---QVLEQAP-EWLNGFVAKGV 273 (283) T ss_dssp H----------HH---CHHHHHHHHHHHTT-S--CEEECTTSS--CEEEEESSHHHHH---HHHHHCC-C-CCEEEEEEE T ss_pred H----------HH---CHHHHHHHHHHHCC-C--CEEEECHHH--EEEEEECCHHHHH---HHHHHCC-CCCCEEEECCC T ss_conf 9----------86---86999999998566-9--868626401--1105879999999---9998640-40769994867 Q ss_pred C Q ss_conf 4 Q gi|254781017|r 318 H 318 (324) Q Consensus 318 ~ 318 (324) + T Consensus 274 ~ 274 (283) T 2ww4_A 274 N 274 (283) T ss_dssp S T ss_pred C T ss_conf 5 No 20 >2gs8_A Mevalonate pyrophosphate decarboxylase; structural genomics, PSI, protein structure initiative; HET: MSE; 1.50A {Streptococcus pyogenes m1 gas} Probab=99.85 E-value=3.1e-18 Score=133.16 Aligned_cols=284 Identities=12% Similarity=0.076 Sum_probs=175.3 Q ss_pred CCEEEEECCEEEEEECCC--EEE----CCCEEEEEEEC-CEEEEEEEECCCC--EEEEEECCCCCCCCCCHHHCCCHHHH Q ss_conf 878999717049997435--330----89428987767-7289999986898--49999536444465661201508999 Q gi|254781017|r 5 LHKICVSAPGSLVLMGEH--GVL----HGHAALVFAIN-KRVILYLTLRKDR--LINIDSSLGQYCGSLDLAMFHPSFSF 75 (324) Q Consensus 5 ~~ki~~~aPGKv~L~GEh--~v~----~G~~ai~~aI~-~~~~~~~~~~~~~--~i~i~~~~~~~~~~~~~~~~~~~~~~ 75 (324) ++.|+++||-.|-|+=.+ .+. =-.+.|++++| .++..+++..++. ...+..... ...+ ..... T Consensus 6 ~~~vt~~a~~NIAliKYWGK~d~~~~lP~n~SiS~TL~~~~T~T~v~~~~~~~~~d~~~~ng~-----~~~~---~~~~~ 77 (317) T 2gs8_A 6 PNVITVTSYANIAIIKYWGKENQAKMIPSTSSISLTLENMFTTTSVSFLPDTATSDQFYINGI-----LQND---EEHTK 77 (317) T ss_dssp CCEEEEEEEEEEEEECCCCEEETTTTEESSCEEEEEEEEEEEEEEEEECCTTCCSCEEEETTE-----ECCH---HHHHH T ss_pred CCCEEEEECCCEEEEECCCCCCCCCCCCCCCEEEEECCCCCCEEEEEEECCCCCCEEEEECCE-----ECCC---HHHHH T ss_conf 993899932618888305756888878999825169678986899998358888539999998-----7780---67889 Q ss_pred HHHHHHHHCC--CCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHH Q ss_conf 9999997187--78738999826875354887402456655677764045666601455788887765214688754477 Q gi|254781017|r 76 IIMAINHIKP--SCGFDLKVISQLDSQLGLGSSAAITVAITAALLTLQYHKEPSPDEILTTAHAIVLKVQGISSGIDLAA 153 (324) Q Consensus 76 i~~~l~~~~~--~~g~~i~i~s~iP~g~GLGSSaa~~va~~~al~~~~~~~~~~~~~i~~lA~~~E~~~~g~~sG~D~~a 153 (324) +...+.++.. ...++|++..++|.++|||||||..+|++.|++.+ ++.+++.+++.++|...| | ..+. T Consensus 78 ~~~~~~~~~~~~~~~~~I~s~n~~P~aaGLaSSAs~~aA~~~a~~~~-~~~~l~~~~ls~lAr~gs----G-----Sa~r 147 (317) T 2gs8_A 78 ISAIIDQFRQPGQAFVKMETQNNMPTAAGLSSSSSGLSALVKACDQL-FDTQLDQKALAQKAKFAS----G-----SSSR 147 (317) T ss_dssp HHHHHTTTCCTTCCCEEEEEECCSCGGGCCCHHHHHHHHHHHHHHHH-HTCCCCHHHHHHHHHHHH----G-----GGGG T ss_pred HHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHCC----C-----CCCC T ss_conf 99999862431366089999725753100000688999999999997-378888899999997528----7-----7051 Q ss_pred HHCCCEEEEEECCCEEEEEECCCCC----CEEECCCC--CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHH Q ss_conf 6629858998527515673047775----26765841--79899998889988608234899999998403320788987 Q gi|254781017|r 154 SIHGGLICYQMPKYSIEKIDFIFPI----HLIYSGYK--TPTAQVLKKISYIEIEYPEINEINQKIYALMGKLSQISCQA 227 (324) Q Consensus 154 ~~~Gg~i~~~~~~~~~~~~~~~~~l----~l~~tg~~--~~T~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~a 227 (324) |+|||++.+......+..++..+++ +++....+ .+|..+ +......+...+....... -......| T Consensus 148 Si~GG~v~w~~~~~~~~~~~~~~~~~~~i~~v~~~~k~v~St~~~----~~~~~~s~~~~~~~~~~~~----~~~~~~~a 219 (317) T 2gs8_A 148 SFFGPVAAWDKDSGAIYKVETDLKMAMIMLVLNAAKKPISSREGM----KLCRDTSTTFDQWVEQSAI----DYQHMLTY 219 (317) T ss_dssp GGSCSEEEECTTTCCEEECCCCCCEEEEEEECCCSSCCSCHHHHH----HHHHHHCTTHHHHHHHHHH----HHHHHHHH T ss_pred HHHCCEEEEECCCCCEEECCCCCCHHEEEEEEECCCCCCCCHHHH----HHHHCCCHHHHHHHHHHHH----HHHHHHHH T ss_conf 431886899518985021478973336999972367666540768----8652020257888987436----79999999 Q ss_pred HCCCCHHHHHHHHHHH----HHHHHH--HC--CCCHHH---HHHHHHHHHCCCCEEEECCCCCCCCEEEEEECCCCCHHH Q ss_conf 3048644568999998----999986--16--787799---999999997199459972689975489998466532689 Q gi|254781017|r 228 LRNKNLKVLAQAMNRQ----QGLLET--LG--VSDSKL---SEIVWKLREQPHIMASKISGSGLGDCVIALGKGDLNSLP 296 (324) Q Consensus 228 l~~~d~~~l~~lm~~~----~~~L~~--lg--vs~~~l---~~li~~~~~~~g~~~aklsGAG~GG~~i~l~~~~~~~~~ 296 (324) ++++|++.|++++-.. |..+++ .. .-+|.. -+.|+.+++ .|..++-.+|||+ .+.+|++++..+++ T Consensus 220 l~~~D~~~l~~~~e~d~~~lHa~~~~~~pp~~~~~~~t~~vi~~i~~~r~-~G~~~~~t~dAGP--nV~~l~~~~~~~~i 296 (317) T 2gs8_A 220 LKTNNFEKVGQLTEANALAMHATTKTANPPFSYLTKESYQAMEAVKELRQ-EGFACYFTMDAGP--NVKVLCLEKDLAQL 296 (317) T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHTTSSSCCCSCCHHHHHHHHHHHHHHH-TTCCEEEECCSSS--CEEEEEEGGGHHHH T ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCHHHHHHHHHHHHHHH-CCCCEEEEECCCC--CEEEEECHHHHHHH T ss_conf 98799999999999999999999983599724218259999999999996-8982999926882--67999736029999 Q ss_pred HHHHHHHHHHCCCEEEEEECCCCCCC Q ss_conf 99999999977978999414545644 Q gi|254781017|r 297 YQSVNCHMHAKGIDIVPITPSHSTSL 322 (324) Q Consensus 297 ~~~~~~~~~~~g~~~~~~~~~~~~~~ 322 (324) .+. +. +.|+++.-++..|+++ T Consensus 297 ~~~----l~-~~~~~i~~~~g~~~~v 317 (317) T 2gs8_A 297 AER----LG-KNYRIIVSKTKDLPDV 317 (317) T ss_dssp HHH----HH-TTSEEEEEEBCCCCCC T ss_pred HHH----HH-HHCCEEEECCCCCCCC T ss_conf 999----97-6136998168989899 No 21 >3lto_A Mevalonate diphosphate decarboxylase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.27A {Legionella pneumophila} Probab=99.79 E-value=2.7e-16 Score=120.92 Aligned_cols=290 Identities=15% Similarity=0.097 Sum_probs=162.0 Q ss_pred CEEEEECCEEEEEE---CCCE---EECCCEEEEEEECC-EEEEEEEECCCCEEEEEECCCCCCCCCCH----HHCCCHHH Q ss_conf 78999717049997---4353---30894289877677-28999998689849999536444465661----20150899 Q gi|254781017|r 6 HKICVSAPGSLVLM---GEHG---VLHGHAALVFAINK-RVILYLTLRKDRLINIDSSLGQYCGSLDL----AMFHPSFS 74 (324) Q Consensus 6 ~ki~~~aPGKv~L~---GEh~---v~~G~~ai~~aI~~-~~~~~~~~~~~~~i~i~~~~~~~~~~~~~----~~~~~~~~ 74 (324) .|.+++||-.|-|+ |-.- .+==.+.|++++|. ++.++++..++.....+.... ...... ......+. T Consensus 1 m~~~a~Ap~NIAliKYWGK~d~~~~lP~n~SiSlTL~~~~T~t~v~~~~~~~~~~d~~~l--ng~~~~~~~~~~~~r~~~ 78 (323) T 3lto_A 1 MHWFAQAPANIALIKYMGKKDENSNLPDNSSLSYTLSNLLSSVKLEKLPTKKDIWEPLTI--PGAPEFNLSVEAQKRFID 78 (323) T ss_dssp CEEEEEEEEEEEEECCTTCBCTTTCCBSSCEEEEEEEEEEEEEEEEECSSSSCEECCBCT--TSSBCCCCCSHHHHHHHH T ss_pred CCCEEECCCEEEEEEECCCCCCCCCCCCCCEEEEEECCCCCEEEEEEECCCCCCCEEEEE--CCEECCCCCHHHHHHHHH T ss_conf 983417754468983047568888789997125680699668999984267764216898--983533325799999999 Q ss_pred HHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCC-CCCCHHHHHHHHHHHHHHCCCCCCHHHHH Q ss_conf 99999997187787389998268753548874024566556777640456-66601455788887765214688754477 Q gi|254781017|r 75 FIIMAINHIKPSCGFDLKVISQLDSQLGLGSSAAITVAITAALLTLQYHK-EPSPDEILTTAHAIVLKVQGISSGIDLAA 153 (324) Q Consensus 75 ~i~~~l~~~~~~~g~~i~i~s~iP~g~GLGSSaa~~va~~~al~~~~~~~-~~~~~~i~~lA~~~E~~~~g~~sG~D~~a 153 (324) ++....+.+....+++|...+++|.++|||||||..+|++.|++.+.... ..+...+.+++..+|. |-|.+| T Consensus 79 ~l~~i~~~~~~~~~~~I~s~N~~P~aaGLaSSASa~aA~~~aa~~~~~~~~~~~~~~~~~ls~~ar~-------gSgSaa 151 (323) T 3lto_A 79 HLVRLKEYFGYVGGFLIQSSNNFPHSSGLASSASSFAALTKCASIALSELTQKPLPSIDEQAQLSRL-------GSGSSC 151 (323) T ss_dssp HHHHHHHHHTCCCCEEEEEEESSCTTTTCCCHHHHHHHHHHHHHHHHHHHHTCCCCCHHHHHHHHHT-------TCGGGG T ss_pred HHHHHHHHCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHC-------CCCCCC T ss_conf 9999998679874289999568774312110567999999999999740322320028899999722-------899745 Q ss_pred -HHCCCEEEEEECCCEEEEEECCC--C-CCEEECCC-CCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHH Q ss_conf -66298589985275156730477--7-52676584-1798999988899886082348999999984033207889873 Q gi|254781017|r 154 -SIHGGLICYQMPKYSIEKIDFIF--P-IHLIYSGY-KTPTAQVLKKISYIEIEYPEINEINQKIYALMGKLSQISCQAL 228 (324) Q Consensus 154 -~~~Gg~i~~~~~~~~~~~~~~~~--~-l~l~~tg~-~~~T~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~al 228 (324) |+|||++.+...+......+++. . ++++.... +.+|.+..+. ....|...+...... ........|| T Consensus 152 rSi~GG~v~w~~~~~~~~~~~~~~~~~~i~vv~~~~k~vsS~~a~~~----~~tsp~~~~~~~~~~----~~~~~~~~Al 223 (323) T 3lto_A 152 RSFYAPWALWTGDKVSAIDLPYKDLLHQVIVISSQEKEIPSRVAHKL----VKTSPFYETRSERAE----ANLKLLLNAF 223 (323) T ss_dssp GGGSCSEEEEETTEEEECCCSCCSCEEEEEECCCCTTCCCHHHHHHH----GGGSTTTTTHHHHHH----HHHHHHHHHH T ss_pred CHHHCCCEEEECCCCCEEECCCCCCCCEEEEECCCCCCCCCHHHHHH----CCCCCCHHHHHHHHH----HHHHHHHHHH T ss_conf 04428806850798753305764511159994277666772655510----568976699998717----7599999999 Q ss_pred CCCCHHHHHHHHHHH----HHHHHHH--CC--CCHHHHH---HHHHHHHCCCCEEEECCCCCCCCEEEEEECCCCCHHHH Q ss_conf 048644568999998----9999861--67--8779999---99999971994599726899754899984665326899 Q gi|254781017|r 229 RNKNLKVLAQAMNRQ----QGLLETL--GV--SDSKLSE---IVWKLREQPHIMASKISGSGLGDCVIALGKGDLNSLPY 297 (324) Q Consensus 229 ~~~d~~~l~~lm~~~----~~~L~~l--gv--s~~~l~~---li~~~~~~~g~~~aklsGAG~GG~~i~l~~~~~~~~~~ 297 (324) +++|++.|++++-++ |..+.+- .+ -+|+..+ .|+..+...|..++-.+|||+ ++.+|+.++..+.+. T Consensus 224 ~~~d~~~l~~l~e~d~~~mHa~~~~s~pp~~y~~~~s~~~i~~v~~~r~~~G~~~~~T~DAGP--nv~vl~~~~~~~~v~ 301 (323) T 3lto_A 224 ENKDWTSIYQICWHEFLDMHQLFKTCEKPFSYITDNTLHILSVIEKFWNEKGDGPVVTMDAGP--NVHLLYRSDQTDLAR 301 (323) T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHHTSSSCCCSCCHHHHHHHHHHHHHHHHHSCCCEEECCSSS--CEEEEECGGGHHHHH T ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCHHHHHHHHHHHHHHHCCCCEEEEECCCC--CEEEEECCCCHHHHH T ss_conf 747899999999999999899987059985501826999999999999966993699867883--779997545489999 Q ss_pred HHHHHHHHHCCCEEEEEE Q ss_conf 999999997797899941 Q gi|254781017|r 298 QSVNCHMHAKGIDIVPIT 315 (324) Q Consensus 298 ~~~~~~~~~~g~~~~~~~ 315 (324) +-+++++ ...++++.-- T Consensus 302 ~~~~~~~-~g~~~vl~~~ 318 (323) T 3lto_A 302 QFKSDHL-VGNYDVLEGH 318 (323) T ss_dssp HHHHHHT-TTTSEEC--- T ss_pred HHHHHHC-CCCEEEEECC T ss_conf 9999746-7850577524 No 22 >1fi4_A Mevalonate 5-diphosphate decarboxylase; mixed alpha/beta structure, ATP binding, cholesterol biosynthesis, structural genomics, PSI; 2.27A {Saccharomyces cerevisiae} SCOP: d.14.1.5 d.58.26.2 Probab=99.70 E-value=1.3e-13 Score=103.84 Aligned_cols=281 Identities=14% Similarity=0.142 Sum_probs=158.7 Q ss_pred CCCCC--EEEEECCEEEEEECCCE--E----ECCCEEEEEEEC---CEEEEEEEECCCCE---EEEEECCCCCCCCCCHH Q ss_conf 98887--89997170499974353--3----089428987767---72899999868984---99995364444656612 Q gi|254781017|r 2 GQCLH--KICVSAPGSLVLMGEHG--V----LHGHAALVFAIN---KRVILYLTLRKDRL---INIDSSLGQYCGSLDLA 67 (324) Q Consensus 2 ~~~~~--ki~~~aPGKv~L~GEh~--v----~~G~~ai~~aI~---~~~~~~~~~~~~~~---i~i~~~~~~~~~~~~~~ 67 (324) |.-|. +.+|+||-.|-|+=..- + +==.+.|+++++ .++..+++.+++.. +.++.. ....+.. T Consensus 18 ~~~~~~~~~t~~AP~NIAlIKYWGKrd~~l~lP~n~SiS~TL~~d~~~T~Ttv~~s~~~~~d~~~lNG~----~~~~~~~ 93 (416) T 1fi4_A 18 GSHMTVYTASVTAPVNIATLKYWGKRDTKLNLPTNSSISVTLSQDDLRTLTSAATAPEFERDTLWLNGE----PHSIDNE 93 (416) T ss_dssp -----CEEEEEEECCEEEEECCCCEEETTTTEESSCEEEEEBCTTTSCEEEEEEECTTCCSCBCTTTCC----BSSSSSS T ss_pred CCCEEEEEEEEEEECCEEEEECCCCCCCCCCCCCCCCEEEEECCCCCEEEEEEEECCCCCCCEEEECCE----ECCCCCH T ss_conf 870389999997534332640157668767899998147893699987789999788887787999998----6576308 Q ss_pred HCCCHHHHHHHH---HHHHC------CCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH Q ss_conf 015089999999---99718------778738999826875354887402456655677764045666601455788887 Q gi|254781017|r 68 MFHPSFSFIIMA---INHIK------PSCGFDLKVISQLDSQLGLGSSAAITVAITAALLTLQYHKEPSPDEILTTAHAI 138 (324) Q Consensus 68 ~~~~~~~~i~~~---l~~~~------~~~g~~i~i~s~iP~g~GLGSSaa~~va~~~al~~~~~~~~~~~~~i~~lA~~~ 138 (324) .....++.+... +.... ....++|...+++|.++||+||||..+|++.++..+ ++.+++..++.++|... T Consensus 94 r~~~~l~~ir~l~~~~~~~~~~~~~~~~~~l~I~S~NnfPtaaGLASSASg~AAl~~al~~l-~~~~l~~~elS~lAR~G 172 (416) T 1fi4_A 94 RTQNCLRDLRQLRKEMESKDASLPTLSQWKLHIVSENNFPTAAGLASSAAGFAALVSAIAKL-YQLPQSTSEISRIARKG 172 (416) T ss_dssp SHHHHHHHHHHHHHHHHTTCTTSCCGGGSCEEEEEEECCCTTSCCCHHHHHHHHHHHHHHHH-TTCCSCHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHH-HCCCCCHHHHHHHHHHC T ss_conf 89999999999998754012246533462289999568842246888999999999999998-56778889999998610 Q ss_pred HHHHCCCCCCHHHHHHHCCCEEEEEECCCE------EEEEE----CC-CC--CCEEECCCC-C-CHHHHHHHHHHHHHHC Q ss_conf 765214688754477662985899852751------56730----47-77--526765841-7-9899998889988608 Q gi|254781017|r 139 VLKVQGISSGIDLAASIHGGLICYQMPKYS------IEKID----FI-FP--IHLIYSGYK-T-PTAQVLKKISYIEIEY 203 (324) Q Consensus 139 E~~~~g~~sG~D~~a~~~Gg~i~~~~~~~~------~~~~~----~~-~~--l~l~~tg~~-~-~T~~~v~~v~~~~~~~ 203 (324) + | -.+.|+|||++.+..+... ..++. ++ .. +++++...+ . +|..+.. ..... T Consensus 173 S--------G-SAcRSi~GG~v~W~~g~~~dgsds~A~~v~~~~~~p~l~~iilvv~~~~K~vsST~gm~~----~v~tS 239 (416) T 1fi4_A 173 S--------G-SACRSLFGGYVAWEMGKAEDGHDSMAVQIADSSDWPQMKACVLVVSDIKKDVSSTQGMQL----TVATS 239 (416) T ss_dssp H--------G-GGGGGGSSSEEEEECCSCTTCTTCEEEEEECGGGSTTEEEEEEEECCCSCCCCHHHHHHH----HHHHC T ss_pred C--------C-CHHHHHHCCEEEECCCCCCCCCCCEEEECCCCCCCCCCEEEEEEECCCCCCCCCCCCHHC----CCCCC T ss_conf 6--------3-445564088778437888778763478715655664400389983466555656310111----54557 Q ss_pred CCHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHH--C------CCCHHHH---HHHHHHHHC-CCCE Q ss_conf 23489999999840332078898730486445689999989999861--6------7877999---999999971-9945 Q gi|254781017|r 204 PEINEINQKIYALMGKLSQISCQALRNKNLKVLAQAMNRQQGLLETL--G------VSDSKLS---EIVWKLREQ-PHIM 271 (324) Q Consensus 204 ~~~~~~~~~~~~~~~~i~~~~~~al~~~d~~~l~~lm~~~~~~L~~l--g------vs~~~l~---~li~~~~~~-~g~~ 271 (324) |.+.+..+.. ..+...+...|++++|++.|++++-..-..|.++ . .-+|... ++|+..++. ++.. T Consensus 240 ~~~~~~~~~~---a~~~~~~m~~Ai~~~Df~~~~ei~e~ds~~mHa~~l~s~Ppi~Y~~~~s~~ii~~v~~~r~~~~~~~ 316 (416) T 1fi4_A 240 ELFKERIEHV---VPKRFEVMRKAIVEKDFATFAKETMMDSNSFHATCLDSFPPIFYMNDTSKRIISWCHTINQFYGETI 316 (416) T ss_dssp SHHHHHHHTH---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSCCCCCCHHHHHHHHHHHHHHHHHTSCC T ss_pred CCHHHHHHHH---HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHCCCCC T ss_conf 5789999875---0668999999998389999999999989999999863699847568427999999999998638972 Q ss_pred EEECCCCCCCCEEEEEECCCCCHHHHHHHHHHHH Q ss_conf 9972689975489998466532689999999999 Q gi|254781017|r 272 ASKISGSGLGDCVIALGKGDLNSLPYQSVNCHMH 305 (324) Q Consensus 272 ~aklsGAG~GG~~i~l~~~~~~~~~~~~~~~~~~ 305 (324) .+-..+||+ .+..|++.+..+.+.+.+...+. T Consensus 317 ~~yT~DAGP--Nv~il~~~~~~~~v~~~l~~~f~ 348 (416) T 1fi4_A 317 VAYTFDAGP--NAVLYYLAENESKLFAFIYKLFG 348 (416) T ss_dssp EEEEECSSS--CEEEEEEGGGHHHHHHHHHHHHT T ss_pred EEEEECCCC--CEEEEECHHHHHHHHHHHHHHCC T ss_conf 899967887--77999747669999999999769 No 23 >3f0n_A Mevalonate pyrophosphate decarboxylase; cholesterol biosynthesis, lipid synthesis, lyase, steroid biosynthesis, sterol biosynthesis; 1.90A {Mus musculus} PDB: 3d4j_A Probab=99.58 E-value=2.3e-12 Score=96.05 Aligned_cols=277 Identities=13% Similarity=0.160 Sum_probs=152.9 Q ss_pred CCCCCEEEEECCEEEEEEC---CCE---EECCCEEEEEEE---CCEEEEEEEECCC---CEEEEEECCCCCCCCCCHHHC Q ss_conf 9888789997170499974---353---308942898776---7728999998689---849999536444465661201 Q gi|254781017|r 2 GQCLHKICVSAPGSLVLMG---EHG---VLHGHAALVFAI---NKRVILYLTLRKD---RLINIDSSLGQYCGSLDLAMF 69 (324) Q Consensus 2 ~~~~~ki~~~aPGKv~L~G---Eh~---v~~G~~ai~~aI---~~~~~~~~~~~~~---~~i~i~~~~~~~~~~~~~~~~ 69 (324) ||-...|+|+||-.|-|+= -+- .+=-.+.|++++ +.++..+++.+++ +.+.+.... ........ T Consensus 18 ~~~~~~vT~~Ap~NIAlIKYWGKrD~~l~lP~N~SiS~TL~~~~~~T~Ttv~~s~~~~~D~~~lNGk~----~~~~~~Ri 93 (414) T 3f0n_A 18 GPQDLMVTCTAPVNIAVIKYWGKRDEALILPINSSLSVTLHQDQLKTTTTVAISKDFTEDRIWLNGRE----EDVGQPRL 93 (414) T ss_dssp ---CEEEEEEECCEEEEECCCCEEETTTTEESSCEEEEEBCTTTSCEEEEEEECTTCCSCEEEETTEE----ECTTCHHH T ss_pred CCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEEECCCCCCCEEEECCEE----CCCCCHHH T ss_conf 66663899982367525412575688778999980579805888678999997888878789999997----77635789 Q ss_pred CCHHHHHHHHHHHHC-----------CCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH Q ss_conf 508999999999718-----------778738999826875354887402456655677764045666601455788887 Q gi|254781017|r 70 HPSFSFIIMAINHIK-----------PSCGFDLKVISQLDSQLGLGSSAAITVAITAALLTLQYHKEPSPDEILTTAHAI 138 (324) Q Consensus 70 ~~~~~~i~~~l~~~~-----------~~~g~~i~i~s~iP~g~GLGSSaa~~va~~~al~~~~~~~~~~~~~i~~lA~~~ 138 (324) ...++.++...+... ....++|...+++|..+||+|||+..+|++.++..+. +.+ .++.++|... T Consensus 94 ~~~l~~ir~~~~~~~~~~~~~~~p~~~~~~~~I~S~NnfPtaAGLASSASg~aALa~al~~l~-~l~---~~lS~iARlG 169 (414) T 3f0n_A 94 QACLREIRRLARKRRSTEDGDTLPLSLSYKVHVASVNNFPTAAGLASSAAGYACLAYTLAQVY-GVE---GDLSEVARRG 169 (414) T ss_dssp HHHHHHHHHHHHC-------CCHHHHHHSCEEEEEEECCCGGGCCCHHHHHHHHHHHHHHHHH-TCC---SCCHHHHHHH T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHH-CCC---HHHHHHHHHH T ss_conf 999999999987631112233465455642699851476166678887999999999999885-353---3599999860 Q ss_pred HHHHCCCCCCHHHHHHHCCCEEEEEECCC------EEEEEE--CCCC-----CCEEECCCCC-C-HHHHHHHHHHHHHHC Q ss_conf 76521468875447766298589985275------156730--4777-----5267658417-9-899998889988608 Q gi|254781017|r 139 VLKVQGISSGIDLAASIHGGLICYQMPKY------SIEKID--FIFP-----IHLIYSGYKT-P-TAQVLKKISYIEIEY 203 (324) Q Consensus 139 E~~~~g~~sG~D~~a~~~Gg~i~~~~~~~------~~~~~~--~~~~-----l~l~~tg~~~-~-T~~~v~~v~~~~~~~ 203 (324) + |++ .-++|||++.+..+.. ...++. ..++ +++++...+. + |..+.. ..+.. T Consensus 170 S----GSA-----~RSi~GGfv~W~~g~~~dgsds~a~~i~~~~~~p~l~~iilivd~~~K~vsSt~gm~~----~~~tS 236 (414) T 3f0n_A 170 S----GSA-----CRSLYGGFVEWQMGEQADGKDSIARQIAPEWHWPQLRILILVVSADKKQTGSTVGMQT----SVETS 236 (414) T ss_dssp C----GGG-----GGGGSSSEEEECCCSCTTCTTCCEEEEECTTSCTTEEEEEEEESCCC-CCCHHHHHHH----HHHHC T ss_pred C----CCC-----CCCCCCCEEEECCCCCCCCCCCCCEECCCCCCCCCCCEEEEEECCCCCCCCCHHHHHH----HHHCC T ss_conf 7----885-----3103166456046788788765303346644565100699982465566776787764----01036 Q ss_pred CCHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHH------C--CCCHH---HHHHHHHHHHC-CCCE Q ss_conf 23489999999840332078898730486445689999989999861------6--78779---99999999971-9945 Q gi|254781017|r 204 PEINEINQKIYALMGKLSQISCQALRNKNLKVLAQAMNRQQGLLETL------G--VSDSK---LSEIVWKLREQ-PHIM 271 (324) Q Consensus 204 ~~~~~~~~~~~~~~~~i~~~~~~al~~~d~~~l~~lm~~~~~~L~~l------g--vs~~~---l~~li~~~~~~-~g~~ 271 (324) |......+.. .....++..+||+++|++.|++++-..-..+.++ . .-+|. +-++|+..++. ++.- T Consensus 237 p~~~~r~~~~---~~~~i~~m~~Ai~~~Df~~fgel~e~dsl~mHA~~l~s~Pp~~Y~~~~s~~ii~~V~~~r~~~~~~~ 313 (414) T 3f0n_A 237 TLLKFRAESV---VPERMKEMTRCIQEQDFQGFAQLTMKDSNQFHATCLDTFPPISYLNDTSRRIIQLVHRFNTHHGQTK 313 (414) T ss_dssp HHHHHHHHHT---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSCCCCCCHHHHHHHHHHHHHHHHHTSCC T ss_pred CHHHHHHHHH---HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHCCCCC T ss_conf 4799999986---5899999999999599999999999999999999854799858767648999999999999669976 Q ss_pred EEECCCCCCCCEEEEEECCCCCHHHHHHHHHHH Q ss_conf 997268997548999846653268999999999 Q gi|254781017|r 272 ASKISGSGLGDCVIALGKGDLNSLPYQSVNCHM 304 (324) Q Consensus 272 ~aklsGAG~GG~~i~l~~~~~~~~~~~~~~~~~ 304 (324) .+--.+||+ .+..|+.++..+.+++.++..+ T Consensus 314 v~~T~DAGP--Nv~il~~~~~~~~v~~~l~~~f 344 (414) T 3f0n_A 314 VAYTFDAGP--NAVIFTLEDTVAEFVAAVRHSF 344 (414) T ss_dssp EEEECCSSS--CEEEEEEHHHHHHHHHHHHHHS T ss_pred EEEEECCCC--CEEEEEECCCHHHHHHHHHHHC T ss_conf 899978887--8799973254999999999878 No 24 >2hke_A Diphosphomevalonate decarboxylase, putative; mevalonate diphosphate decarboxylase, lyase; 1.80A {Trypanosoma brucei} Probab=99.54 E-value=7.2e-12 Score=92.92 Aligned_cols=269 Identities=13% Similarity=0.160 Sum_probs=147.5 Q ss_pred CEEEEECCEEEEEEC---CC-----EEECCCEEEEEEEC---CEEEEEEEECCC---CEEEEEECCCCCCCCCCHHHCCC Q ss_conf 789997170499974---35-----33089428987767---728999998689---84999953644446566120150 Q gi|254781017|r 6 HKICVSAPGSLVLMG---EH-----GVLHGHAALVFAIN---KRVILYLTLRKD---RLINIDSSLGQYCGSLDLAMFHP 71 (324) Q Consensus 6 ~ki~~~aPGKv~L~G---Eh-----~v~~G~~ai~~aI~---~~~~~~~~~~~~---~~i~i~~~~~~~~~~~~~~~~~~ 71 (324) +.|+++||-.|-|+= -+ ..+=-.+.|+++++ .++..++..+++ +.+.+... + .+ ....+ T Consensus 4 ~~vt~~AP~NIAlIKYWGKrD~~e~L~lP~N~SiS~TL~~~~~~T~Ttv~~~~~~~~D~~~lNG~--~----~~-~~~~~ 76 (380) T 2hke_A 4 QCVTVEAPINIAFIKYWGKREGGETLILPTNDSFSITLSASPFRSKTSVELRDDIETDTLRLNGT--E----VD-VGKTP 76 (380) T ss_dssp CEEEEEECCEEEEECCCCBCTTCTTTTCBSSCEEEEEBCSSSCCEEEEEEEESSCSSCEEEETTE--E----EC-GGGCH T ss_pred CEEEEEEECEEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEEECCCCCCCEEEECCE--E----CC-CCCCH T ss_conf 61999820513465326777888677789998057995599976899999888887757999997--7----87-42016 Q ss_pred HHHHHHHHHHHHC----CCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCC Q ss_conf 8999999999718----778738999826875354887402456655677764045666601455788887765214688 Q gi|254781017|r 72 SFSFIIMAINHIK----PSCGFDLKVISQLDSQLGLGSSAAITVAITAALLTLQYHKEPSPDEILTTAHAIVLKVQGISS 147 (324) Q Consensus 72 ~~~~i~~~l~~~~----~~~g~~i~i~s~iP~g~GLGSSaa~~va~~~al~~~~~~~~~~~~~i~~lA~~~E~~~~g~~s 147 (324) -+..++..++... ....++|....++|..+||.||||-.+|++.|+..+. +. ..++..+|.. |.+| T Consensus 77 ri~~~l~~ir~~~~~~~~~~~~~I~S~NnFPtaAGLASSAsg~AALa~al~~~~-~~---~~~lS~lAR~------GSGS 146 (380) T 2hke_A 77 RVQSMLLHLRSTCPEELKNKKVNIVSENNFPTAAGMASSASGYCAMSAALIRAF-KS---TTNVSMLARL------GSGS 146 (380) T ss_dssp HHHHHHHHHHTSSCHHHHTCEEEEEEEECSCTTSCCCHHHHHHHHHHHHHHHHH-TC---SSCHHHHHHH------HCGG T ss_pred HHHHHHHHHHHHCHHHHCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHH-CC---CHHHHHHHHH------HCCC T ss_conf 899999999985614304751699975788205657877899999999999874-25---4457899875------2765 Q ss_pred CHHHHHHHCCCEEEEEECCCE------EEEEE--CCCC-----CCEEECCCCCC--HHHHHHHHHHHHHHCCCHHHHHHH Q ss_conf 754477662985899852751------56730--4777-----52676584179--899998889988608234899999 Q gi|254781017|r 148 GIDLAASIHGGLICYQMPKYS------IEKID--FIFP-----IHLIYSGYKTP--TAQVLKKISYIEIEYPEINEINQK 212 (324) Q Consensus 148 G~D~~a~~~Gg~i~~~~~~~~------~~~~~--~~~~-----l~l~~tg~~~~--T~~~v~~v~~~~~~~~~~~~~~~~ 212 (324) .+-|+|||++.+..+... -.++. ..++ +++++.+.+.- |..+ +...+..|.+...... T Consensus 147 ---AcRSi~GGfv~W~~g~~~dgsds~A~qi~~~~~w~~l~~~ilvvs~~~K~vsSt~GM----~~~v~TSpl~~~r~~~ 219 (380) T 2hke_A 147 ---ACRSAFGGFVIWNKGEKPDGSDCVATQFVDETHWPEIQVMCAVLKGAQKDVSSTKGM----QQSLKTSPLMKKRISE 219 (380) T ss_dssp ---GGGGGSSSEEEEECCSCTTSTTCEEEEEECTTSCTTEEEEEEECCCCSCCCCHHHHH----HHHHHHCTTHHHHHHT T ss_pred ---CHHHHCCCEEEECCCCCCCCCCCCEEECCCCCCCCCCEEEEEEECCCCCCCCCHHHH----HHHHHHCCCHHHHHHH T ss_conf ---013303884572268999960000352366445511206999943776777752889----9998839108999998 Q ss_pred HHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHH------C--CCCHHHHHHH---HHHHH-CCCCEEEECCCCCC Q ss_conf 99840332078898730486445689999989999861------6--7877999999---99997-19945997268997 Q gi|254781017|r 213 IYALMGKLSQISCQALRNKNLKVLAQAMNRQQGLLETL------G--VSDSKLSEIV---WKLRE-QPHIMASKISGSGL 280 (324) Q Consensus 213 ~~~~~~~i~~~~~~al~~~d~~~l~~lm~~~~~~L~~l------g--vs~~~l~~li---~~~~~-~~g~~~aklsGAG~ 280 (324) ...+..++..+|++++|++.|+++.-..-..+.++ . .-+|..-++| +..+. .++.-.+--.=||+ T Consensus 220 ---~~~~~~~~~~~Ai~~~Df~~~~ei~e~ds~~mHA~~l~s~Ppi~Yl~~~S~~ii~~V~~~r~~~~~~~v~yT~DAGP 296 (380) T 2hke_A 220 ---TVPERMKIASRAIKARDFATFAEIAMLESDDLQEICATTEPKITYATEDSYAMIRLVKAYNAKKGRTALAYTFDAGA 296 (380) T ss_dssp ---HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTSSSCCCCCCHHHHHHHHHHHHHHHHHTSCCEEEECCSSS T ss_pred ---HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHCCCCEEEEEECCCC T ss_conf ---63778999999998399999999999999999999853799879978469999999999997468941999978898 Q ss_pred CCEEEEEECCCCCHHHHHHHHHH Q ss_conf 54899984665326899999999 Q gi|254781017|r 281 GDCVIALGKGDLNSLPYQSVNCH 303 (324) Q Consensus 281 GG~~i~l~~~~~~~~~~~~~~~~ 303 (324) -+..|+..+..+++++.+... T Consensus 297 --Nv~ll~~~~~~~~v~~~l~~~ 317 (380) T 2hke_A 297 --NCFLFVLKEDLPEAVAMLMEH 317 (380) T ss_dssp --CEEEEEEGGGHHHHHHHHHHH T ss_pred --CEEEEECCCCHHHHHHHHHHH T ss_conf --779997251299999999987 No 25 >3lu0_A DNA-directed RNA polymerase subunit alpha; E. coli RNA polymerase, nucleotidyltransferase, transcription, transferase; 11.20A {Escherichia coli} PDB: 3iyd_A Probab=70.64 E-value=2.2 Score=20.26 Aligned_cols=100 Identities=12% Similarity=0.154 Sum_probs=60.0 Q ss_pred CCEEECCCCCCHHHHHHHHHHHHHHC-CC---------------HHHHHHHHHHHHC--CCCHHHHHHHCCCCHHHHHHH Q ss_conf 52676584179899998889988608-23---------------4899999998403--320788987304864456899 Q gi|254781017|r 178 IHLIYSGYKTPTAQVLKKISYIEIEY-PE---------------INEINQKIYALMG--KLSQISCQALRNKNLKVLAQA 239 (324) Q Consensus 178 l~l~~tg~~~~T~~~v~~v~~~~~~~-~~---------------~~~~~~~~~~~~~--~i~~~~~~al~~~d~~~l~~l 239 (324) ++=+||+-.-+-.++++.-......+ .. ..+..+.+...++ +++-++..+|++.++..+++| T Consensus 202 ~lEI~TnGsI~P~eAl~~AakiL~~~f~~f~~~~~~~~~~~~~~~~~~~~~l~~~Ie~LeLSvRs~NcLkra~I~ti~dL 281 (329) T 3lu0_A 202 VIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQPEVKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDL 281 (329) T ss_dssp EEEEEECSSSCHHHHHHHHHHHHHHHTTTSSSCC---------------------------------------------- T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHCCHHHHCCCHHHHHHHHHCCCCCHHHH T ss_conf 99998389889899999999999999997626310134444444444265763879885277888865757189189997 Q ss_pred HHHHHHHHHHH-CCCCHHHHHHHHHHHHCCCCEEEECCC Q ss_conf 99989999861-678779999999999719945997268 Q gi|254781017|r 240 MNRQQGLLETL-GVSDSKLSEIVWKLREQPHIMASKISG 277 (324) Q Consensus 240 m~~~~~~L~~l-gvs~~~l~~li~~~~~~~g~~~aklsG 277 (324) +..+.+-|.++ +.--..++++.+.+.+.+-.+|.++.+ T Consensus 282 v~~s~~dLl~ikNfGkKSl~EI~~kL~~~gl~lgm~l~~ 320 (329) T 3lu0_A 282 VQRTEVELLKTPNLGKKSLTEIKDVLASRGLSLGMRLEN 320 (329) T ss_dssp --------------------------------------- T ss_pred HHCCHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCC T ss_conf 647999995589976200999999999749777787899 No 26 >3k4g_A DNA-directed RNA polymerase subunit alpha; bacterial transcription regulation, DNA-directed RNA polymer nucleotidyltransferase; HET: MLY; 2.05A {Escherichia coli k-12} PDB: 1lb2_B* 1xs9_D Probab=57.33 E-value=5.6 Score=17.67 Aligned_cols=59 Identities=15% Similarity=0.204 Sum_probs=43.8 Q ss_pred CCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHCCCCEEEECCC Q ss_conf 32078898730486445689999989999861-678779999999999719945997268 Q gi|254781017|r 219 KLSQISCQALRNKNLKVLAQAMNRQQGLLETL-GVSDSKLSEIVWKLREQPHIMASKISG 277 (324) Q Consensus 219 ~i~~~~~~al~~~d~~~l~~lm~~~~~~L~~l-gvs~~~l~~li~~~~~~~g~~~aklsG 277 (324) .+..++..+|++.++..+|+++..+...|..+ ++..-.++++.+.+.+.+-.+|.++.+ T Consensus 18 ~LSvR~~N~Lk~~gI~tvgdLv~~se~dLl~i~NfG~kSl~EI~~~L~~~gL~lgm~l~~ 77 (86) T 3k4g_A 18 ELTVRSANCLXAEAIHYIGDLVQRTEVELLXTPNLGXXSLTEIXDVLASRGLSLGMRLEN 77 (86) T ss_dssp CCCHHHHHHHHHTTCCBHHHHHHSCHHHHHTSTTCCHHHHHHHHHHHHTTTCCSSCCEES T ss_pred CCCHHHHHHHCCCCCCCHHHHHHCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCC T ss_conf 788999987255439379999848999981788987726999999999859888997999 No 27 >1coo_A RNA polymerase alpha subunit; transcription regulation, nucleotidyl transferase; NMR {Escherichia coli K12} SCOP: a.60.3.1 PDB: 2jzb_A Probab=45.53 E-value=6.4 Score=17.30 Aligned_cols=59 Identities=15% Similarity=0.214 Sum_probs=44.1 Q ss_pred CCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHCCCCEEEECCC Q ss_conf 32078898730486445689999989999861-678779999999999719945997268 Q gi|254781017|r 219 KLSQISCQALRNKNLKVLAQAMNRQQGLLETL-GVSDSKLSEIVWKLREQPHIMASKISG 277 (324) Q Consensus 219 ~i~~~~~~al~~~d~~~l~~lm~~~~~~L~~l-gvs~~~l~~li~~~~~~~g~~~aklsG 277 (324) .+..++..+|++..+..+|+++..+...|..+ ++..-.++++.+.+.+.+-.+|..+.| T Consensus 30 ~LSvRs~N~L~~~gI~tvgdLv~~se~dLl~~~n~G~KSl~EIk~~L~~~gL~lgm~l~~ 89 (98) T 1coo_A 30 ELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLASRGLSLGMRLEN 89 (98) T ss_dssp TCCTTTHHHHHTTTCCBHHHHHTSCHHHHTTSTTCCHHHHHHHHHHHHHTTCCTTCCCSS T ss_pred CCCHHHHHHHHHHCCCCHHHHHHCCHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCC T ss_conf 778999998738179389999857999997588976878999999999859777997899 No 28 >1z3e_B DNA-directed RNA polymerase alpha chain; bacterial transcription regulation, disulfide stress; 1.50A {Bacillus subtilis} SCOP: a.60.3.1 PDB: 3ihq_B Probab=35.03 E-value=18 Score=14.47 Aligned_cols=50 Identities=20% Similarity=0.268 Sum_probs=37.7 Q ss_pred CCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHCC Q ss_conf 32078898730486445689999989999861-678779999999999719 Q gi|254781017|r 219 KLSQISCQALRNKNLKVLAQAMNRQQGLLETL-GVSDSKLSEIVWKLREQP 268 (324) Q Consensus 219 ~i~~~~~~al~~~d~~~l~~lm~~~~~~L~~l-gvs~~~l~~li~~~~~~~ 268 (324) .+..++..+|++.++..++.+++.+...|..+ ++....++++.+.+.+.+ T Consensus 15 ~LS~R~~N~L~~~~I~tv~dL~~~s~~dLl~i~n~G~kSl~EI~~~L~~~g 65 (73) T 1z3e_B 15 DLSVRSYNCLKRAGINTVQELANKTEEDMMKVRNLGRKSLEEVKAKLEELG 65 (73) T ss_dssp CCBHHHHHHHHHTTCCBHHHHHTSCHHHHHTSTTCCHHHHHHHHHHHHHTT T ss_pred CCCHHHHHHHHHCCCCCHHHHHHCCHHHHHHCCCCCHHHHHHHHHHHHHCC T ss_conf 698999999989489679999868999997478986605999999999849 No 29 >2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99.5) (CM) and prephenate dehydrogenase...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6 Probab=29.49 E-value=22 Score=13.89 Aligned_cols=30 Identities=7% Similarity=0.092 Sum_probs=23.7 Q ss_pred CCHHHHHHHCCCCHHHHHHHHHHHHHHHHH Q ss_conf 207889873048644568999998999986 Q gi|254781017|r 220 LSQISCQALRNKNLKVLAQAMNRQQGLLET 249 (324) Q Consensus 220 i~~~~~~al~~~d~~~l~~lm~~~~~~L~~ 249 (324) -..+..++++++|.+.|.++|++++..+.+ T Consensus 247 ~L~~l~~~i~~~D~~~l~~~l~~~~~~~gd 276 (298) T 2pv7_A 247 TYDEALTFFENNDRQGFIDAFHKVRDWFGD 276 (298) T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTT T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHH T ss_conf 999999999867999999999999999987 No 30 >3gfk_B DNA-directed RNA polymerase subunit alpha; protein-protein complex, cytoplasm, redox-active center, stress response, transcription; 2.30A {Bacillus subtilis} Probab=23.68 E-value=28 Score=13.28 Aligned_cols=50 Identities=20% Similarity=0.268 Sum_probs=35.0 Q ss_pred CCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHCC Q ss_conf 32078898730486445689999989999861-678779999999999719 Q gi|254781017|r 219 KLSQISCQALRNKNLKVLAQAMNRQQGLLETL-GVSDSKLSEIVWKLREQP 268 (324) Q Consensus 219 ~i~~~~~~al~~~d~~~l~~lm~~~~~~L~~l-gvs~~~l~~li~~~~~~~ 268 (324) .+..++..+|++..+..++.++..+..-|..+ ++....++++...+.+.+ T Consensus 22 ~LS~R~~n~L~~~gI~tv~dL~~~s~~dLl~i~n~G~kSl~EI~~~L~~~g 72 (79) T 3gfk_B 22 DLSVRSYNCLKRAGINTVQELANKTEEDMMKVRNLGRKSLEEVKAKLEELG 72 (79) T ss_dssp CCBHHHHHHHHHTTCCBHHHHTTCCHHHHTTSTTCHHHHHHHHHHHHHHTT T ss_pred CCCHHHHHHHHHCCCCCHHHHHHCCHHHHHHCCCCCHHHHHHHHHHHHHCC T ss_conf 798999999989289679999868899997578986737999999999858 No 31 >2a6h_A DNA-directed RNA polymerase alpha chain; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: d.74.3.1 d.181.1.1 PDB: 1smy_A* 1zyr_A* 1iw7_A* 2a69_A* 2a6e_A 2a68_A* 2be5_A* 2cw0_A 2o5i_A 2o5j_A* 2ppb_A* 3dxj_A* 3eql_A* 1i6v_A* 1ynj_A* 1l9z_A 1l9u_A* 1ynn_A* 2gho_A 1hqm_A ... Probab=21.56 E-value=31 Score=12.97 Aligned_cols=47 Identities=19% Similarity=0.300 Sum_probs=28.3 Q ss_pred CCHHHHHHHCCCCHHHHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHH Q ss_conf 2078898730486445689999989999861-6787799999999997 Q gi|254781017|r 220 LSQISCQALRNKNLKVLAQAMNRQQGLLETL-GVSDSKLSEIVWKLRE 266 (324) Q Consensus 220 i~~~~~~al~~~d~~~l~~lm~~~~~~L~~l-gvs~~~l~~li~~~~~ 266 (324) +.-++...|++.++..+++|++.+.+-|.++ +.....++++.+.+.+ T Consensus 261 LSvRs~NcLk~a~I~ti~dLv~~s~~eLl~i~N~G~KSl~EI~ekL~~ 308 (315) T 2a6h_A 261 LSTRVLHSLKEEGIESVRALLALNLKDLKNIPGIGERSLEEIKEALEK 308 (315) T ss_dssp ------------------------------------------------ T ss_pred CCHHHHHHHHHCCCCCHHHHHHCCHHHHHCCCCCCCCCHHHHHHHHHH T ss_conf 879888678785994899987399999847999851039999999998 Done!