HHSEARCH alignment of GI: 254781017 and SCOP domain: d1fi4a1

Alignment
>d1fi4a1 d.14.1.5 (A:3-190) Mevalonate 5-diphosphate decarboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=98.82  E-value=8.5e-08  Score=65.64  Aligned_cols=148  Identities=18%  Similarity=0.228  Sum_probs=91.1

Q ss_pred             CCEEEEECCEEEEEEC---CCEE---ECCCEEEEEEECC---EEEEEEEECCCCE---EEEEECCCCCCCCCCHHHCCCH
Q ss_conf             8789997170499974---3533---0894289877677---2899999868984---9999536444465661201508
Q gi|254781017|r    5 LHKICVSAPGSLVLMG---EHGV---LHGHAALVFAINK---RVILYLTLRKDRL---INIDSSLGQYCGSLDLAMFHPS   72 (324)
Q Consensus         5 ~~ki~~~aPGKv~L~G---Eh~v---~~G~~ai~~aI~~---~~~~~~~~~~~~~---i~i~~~~~~~~~~~~~~~~~~~   72 (324)
                      +.+++++||-.|-|+=   -+-.   +=-.+.|+++++.   ++.++++..++..   +.++.    .....+.......
T Consensus         1 ~~~~t~~apsNIALiKYWGK~d~~~~lP~n~SiS~TL~~~~~~T~t~v~~~~~~~~d~~~lnG----~~~~~~~~~~~~~   76 (188)
T d1fi4a1           1 VYTASVTAPVNIATLKYWGKRDTKLNLPTNSSISVTLSQDDLRTLTSAATAPEFERDTLWLNG----EPHSIDNERTQNC   76 (188)
T ss_dssp             CEEEEEEECCEEEEECCCCEEETTTTEESSCEEEEEBCTTTSCEEEEEEECTTCCSCBCTTTC----CBSSSSSSSHHHH
T ss_pred             CEEEEEECCCCEEEEEECCCCCCCCCCCCCCEEEEEECCCCCEEEEEEEECCCCCCCCEEECC----EECCCCHHHHHHH
T ss_conf             957899753748788752645754577899827899358986788999867877654135788----2036402788999


Q ss_pred             HHHHHH---HHHHHC------CCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf             999999---999718------77873899982687535488740245665567776404566660145578888776521
Q gi|254781017|r   73 FSFIIM---AINHIK------PSCGFDLKVISQLDSQLGLGSSAAITVAITAALLTLQYHKEPSPDEILTTAHAIVLKVQ  143 (324)
Q Consensus        73 ~~~i~~---~l~~~~------~~~g~~i~i~s~iP~g~GLGSSaa~~va~~~al~~~~~~~~~~~~~i~~lA~~~E~~~~  143 (324)
                      ++.+..   .+....      ....++|....++|..+||+|||+..+|++.|+.++ ++.+++.+++..+|...     
T Consensus        77 ~~~l~~~~~~~~~~~~~~p~~~~~~~~I~S~N~FP~aaGLASSAsg~aAl~~al~~~-~~~~~~~~~~S~lARlG-----  150 (188)
T d1fi4a1          77 LRDLRQLRKEMESKDASLPTLSQWKLHIVSENNFPTAAGLASSAAGFAALVSAIAKL-YQLPQSTSEISRIARKG-----  150 (188)
T ss_dssp             HHHHHHHHHHHHTTCTTSCCGGGSCEEEEEEECCCTTSCCCHHHHHHHHHHHHHHHH-TTCCSCHHHHHHHHHHH-----
T ss_pred             HHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHH-HHCCCCHHHHHHHHHHH-----
T ss_conf             999999998873024357641244289996278822110888798899999999999-71778889999998764-----


Q ss_pred             CCCCCHHHHHHHCCCEEEEEECC
Q ss_conf             46887544776629858998527
Q gi|254781017|r  144 GISSGIDLAASIHGGLICYQMPK  166 (324)
Q Consensus       144 g~~sG~D~~a~~~Gg~i~~~~~~  166 (324)
                       .+|   .+-++|||++.+...+
T Consensus       151 -SGS---AcRSi~Gg~v~W~~g~  169 (188)
T d1fi4a1         151 -SGS---ACRSLFGGYVAWEMGK  169 (188)
T ss_dssp             -HGG---GGGGGSSSEEEEECCS
T ss_pred             -CCC---HHHHHCCCEEEECCCC
T ss_conf             -544---0323208866802689


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S5 domain 2-like
superfamily: Ribosomal protein S5 domain 2-like
family: GHMP Kinase, N-terminal domain
domain: Mevalonate 5-diphosphate decarboxylase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]