HHSEARCH alignment of GI: 254781017 and SCOP domain: d1h72c1

Alignment
>d1h72c1 d.14.1.5 (C:5-167) Homoserine kinase {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=99.87  E-value=2.3e-21  Score=151.44  Aligned_cols=158  Identities=18%  Similarity=0.176  Sum_probs=125.1

Q ss_pred             CEEEEECCEEEEEECCCEEECCCEEEEEEECC-EEEEEEEECCCCEEEEEECCCCCCCCCCHHHCCCHH-HHHHHHHHHH
Q ss_conf             78999717049997435330894289877677-289999986898499995364444656612015089-9999999971
Q gi|254781017|r    6 HKICVSAPGSLVLMGEHGVLHGHAALVFAINK-RVILYLTLRKDRLINIDSSLGQYCGSLDLAMFHPSF-SFIIMAINHI   83 (324)
Q Consensus         6 ~ki~~~aPGKv~L~GEh~v~~G~~ai~~aI~~-~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~-~~i~~~l~~~   83 (324)
                      .||.+|+|++.--.|     -|++++.+||+. |.+++++++++..+.++....+...    +..++.. ..+....+.+
T Consensus         1 m~i~v~~Pas~aNlg-----~GFD~lg~Al~~~~d~v~v~~~~~~~i~i~~~~~~i~~----~~~~n~~~~~~~~~~~~~   71 (163)
T d1h72c1           1 MKVRVKAPCTSANLG-----VGFDVFGLCLKEPYDVIEVEAIDDKEIIIEVDDKNIPT----DPDKNVAGIVAKKMIDDF   71 (163)
T ss_dssp             CEEEEEEEEEEECTG-----GGTTTEEEEEEEEEEEEEEEEESSSSEEEEESCTTSCC----CTTTSHHHHHHHHHHHHT
T ss_pred             CEEEEEEECCHHHCC-----CCHHHHHHHHCCCCCEEEEEECCCCEEEEEECCCCCCC----CHHHHHHHHHHHHHHHHC
T ss_conf             979999833077555-----46767651224786589999978982899744852577----544224789988899862


Q ss_pred             CCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCEEEEE
Q ss_conf             87787389998268753548874024566556777640456666014557888877652146887544776629858998
Q gi|254781017|r   84 KPSCGFDLKVISQLDSQLGLGSSAAITVAITAALLTLQYHKEPSPDEILTTAHAIVLKVQGISSGIDLAASIHGGLICYQ  163 (324)
Q Consensus        84 ~~~~g~~i~i~s~iP~g~GLGSSaa~~va~~~al~~~~~~~~~~~~~i~~lA~~~E~~~~g~~sG~D~~a~~~Gg~i~~~  163 (324)
                      ....+++++++++||.++|||||||.++|++.+++.+ ++.++++++++++|.++|...+|.++|-|.++|.|||++...
T Consensus        72 ~~~~~~~i~i~~~IP~gaGLGsSSA~a~a~l~aln~l-~~~~ls~~~l~~~A~~~e~~~~g~~~gddv~~~~~GG~~~~~  150 (163)
T d1h72c1          72 NIGKGVKITIKKGVKAGSGLGSSAASSAGTAYAINEL-FKLNLDKLKLVDYASYGELASSGAKHADNVAPAIFGGFTMVT  150 (163)
T ss_dssp             TCCCEEEEEEECSSCTTSSSCHHHHHHHHHHHHHHHH-TTCCCCHHHHHHHHHHHHHHHHSSCCCTTHHHHHHCSEEEEE
T ss_pred             CCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHH-HCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCEEEEE
T ss_conf             9987789999606413566575078899999999998-379989799999999987765378771476787609979992


Q ss_pred             ECC-CEEEEEE
Q ss_conf             527-5156730
Q gi|254781017|r  164 MPK-YSIEKID  173 (324)
Q Consensus       164 ~~~-~~~~~~~  173 (324)
                      ..+ ..+..+|
T Consensus       151 ~~~~~~~~~~P  161 (163)
T d1h72c1         151 NYEPLEVLHIP  161 (163)
T ss_dssp             ETTTTEEEEEC
T ss_pred             CCCCCCEEECC
T ss_conf             48887068189


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S5 domain 2-like
superfamily: Ribosomal protein S5 domain 2-like
family: GHMP Kinase, N-terminal domain
domain: Homoserine kinase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]