HHSEARCH alignment of GI: 254781017 and SCOP domain: d1k47a1

Alignment
>d1k47a1 d.14.1.5 (A:1-194) Phosphomevalonate kinase (PMK) {Streptococcus pneumoniae r6 [TaxId: 171101]}
Probab=100.00  E-value=3.5e-33  Score=226.27  Aligned_cols=158  Identities=23%  Similarity=0.237  Sum_probs=129.3

Q ss_pred             EEEECCEEEEEECCCEEEC-CCEEEEEEECCEEEEEEEECCCCEEEEEECCCCCCCCCC--HHHCCCHHHHHHHHHHHHC
Q ss_conf             9997170499974353308-942898776772899999868984999953644446566--1201508999999999718
Q gi|254781017|r    8 ICVSAPGSLVLMGEHGVLH-GHAALVFAINKRVILYLTLRKDRLINIDSSLGQYCGSLD--LAMFHPSFSFIIMAINHIK   84 (324)
Q Consensus         8 i~~~aPGKv~L~GEh~v~~-G~~ai~~aI~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~--~~~~~~~~~~i~~~l~~~~   84 (324)
                      |.++||||++|+|||+|+| |++||++|||+|++++++++++..+...+.........+  ..........+...++...
T Consensus         2 i~v~apGK~iL~GE~aVv~~G~~ala~ai~~~~~v~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (194)
T d1k47a1           2 IAVKTCGKLYWAGEYAILEPGQLALIKDIPIYMRAEIAFSDSYRIYSDMFDFAVDLRPNPDYSLIQETIALMGDFLAVRG   81 (194)
T ss_dssp             EEEEEEEEEEEECTTGGGSTTCEEEEEEEEEEEEEEEEECSSCEEEEEC---------CCCHHHHHHHHHHHHHHHHHTT
T ss_pred             EEEEECCEEEEEEEEEEECCCCEEEEEEEECEEEEEEEECCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCC
T ss_conf             69996848999966289608981999998045999999888862775203433112567411688999999999999708


Q ss_pred             -CCCCEEEEEECCCCCCC---CCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCEE
Q ss_conf             -77873899982687535---48874024566556777640456666014557888877652146887544776629858
Q gi|254781017|r   85 -PSCGFDLKVISQLDSQL---GLGSSAAITVAITAALLTLQYHKEPSPDEILTTAHAIVLKVQGISSGIDLAASIHGGLI  160 (324)
Q Consensus        85 -~~~g~~i~i~s~iP~g~---GLGSSaa~~va~~~al~~~~~~~~~~~~~i~~lA~~~E~~~~g~~sG~D~~a~~~Gg~i  160 (324)
                       +..++++.++|++|.++   |||||||++||++.+++++ ++..+++++++++|+.+|+.+||++||+|++||+|||++
T Consensus        82 ~~~~~~~i~i~s~ip~~~~~~GLGSSAA~~va~~~al~~~-~~~~ls~~~i~~lA~~~e~~~~g~~SG~D~a~s~~GG~i  160 (194)
T d1k47a1          82 QNLRPFSLAIYGKMEREGKKFGLGSSGSVVVLVVKALLAL-YNLSVDQNLLFKLTSAVLLKRGDNGSMGDLACIAAEDLV  160 (194)
T ss_dssp             CCCCCEEEEEESHHHHSTTSSCSCHHHHHHHHHHHHHHHH-TTCCCCHHHHHHHHHHHHHHTTCCSCCHHHHHHHHTSCE
T ss_pred             CCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHH-HCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEE
T ss_conf             9888718999746866667776442278999999999987-077899999999999999986358885334588749849


Q ss_pred             EEEECC
Q ss_conf             998527
Q gi|254781017|r  161 CYQMPK  166 (324)
Q Consensus       161 ~~~~~~  166 (324)
                      +|+..+
T Consensus       161 ~y~~~~  166 (194)
T d1k47a1         161 LYQSFD  166 (194)
T ss_dssp             EEECCC
T ss_pred             EEEECC
T ss_conf             998278


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S5 domain 2-like
superfamily: Ribosomal protein S5 domain 2-like
family: GHMP Kinase, N-terminal domain
domain: Phosphomevalonate kinase (PMK)
species: Streptococcus pneumoniae r6 [TaxId: 171101]