HHSEARCH alignment of GI: 254781017 and SCOP domain: d1kvka1

Alignment
>d1kvka1 d.14.1.5 (A:1-225) Mevalonate kinase {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=100.00  E-value=2.5e-35  Score=239.86  Aligned_cols=161  Identities=33%  Similarity=0.423  Sum_probs=126.8

Q ss_pred             CEEEEECCEEEEEECCCEEECCCEEEEEEECCEEEEEEEECCCCEEEEEECCCCCCCCCCHHH-------------CC--
Q ss_conf             789997170499974353308942898776772899999868984999953644446566120-------------15--
Q gi|254781017|r    6 HKICVSAPGSLVLMGEHGVLHGHAALVFAINKRVILYLTLRKDRLINIDSSLGQYCGSLDLAM-------------FH--   70 (324)
Q Consensus         6 ~ki~~~aPGKv~L~GEh~v~~G~~ai~~aI~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~-------------~~--   70 (324)
                      ..+.||||||++|+|||+||+|++||++|||+|+++.+++++++.+.+.+...+.....+...             ..  
T Consensus         4 ~~~~vsAPGKv~L~GEh~v~~G~~al~~ai~~~~~v~v~~~~~~~v~i~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (225)
T d1kvka1           4 EVLLVSAPGKVILHGEHAVVHGKVALAVALNLRTFLVLRPQSNGKVSLNLPNVGIKQVWDVATLQLLDTGFLEQGDVPAP   83 (225)
T ss_dssp             SCEEEEEEEEEEEECTTGGGGTCCEEEEEEEEEEEEEEEECSSSEEEEEETTTTEEEEEEHHHHHTSCC-----------
T ss_pred             CEEEEEECEEEEEEECCEEECCCCEEEEEECCCEEEEEEECCCCEEEEEECCCCCCEEEECCCCCCCCCCCCCCCCCCCC
T ss_conf             70999954189998176255599889999512699999999999499997788862588623232123332123566763


Q ss_pred             --------------------C------HHHHHHHHH-HHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf             --------------------0------899999999-9718778738999826875354887402456655677764045
Q gi|254781017|r   71 --------------------P------SFSFIIMAI-NHIKPSCGFDLKVISQLDSQLGLGSSAAITVAITAALLTLQYH  123 (324)
Q Consensus        71 --------------------~------~~~~i~~~l-~~~~~~~g~~i~i~s~iP~g~GLGSSaa~~va~~~al~~~~~~  123 (324)
                                          .      .+......+ .......|+++.++|++|.|+|||||||++||++.+++.+. +
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~i~s~lP~g~GLGSSAAl~va~~~al~~~~-~  162 (225)
T d1kvka1          84 TLEQLEKLKKVAGLPRDCVGNEGLSLLAFLYLYLAICRKQRTLPSLDIMVWSELPPGAGLGSSAAYSVCVAAALLTAC-E  162 (225)
T ss_dssp             -----CHHHHHHTSSCCCSCTTHHHHHHHHHHHHHHHTTSSSCCCEEEEEEESSCTTSSSCHHHHHHHHHHHHHHHHT-T
T ss_pred             HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHH-C
T ss_conf             145566676653034221002344789999999997502468898699996788887453521588999999999973-7


Q ss_pred             CC---------------CCCHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCEEEEEECCC
Q ss_conf             66---------------660145578888776521468875447766298589985275
Q gi|254781017|r  124 KE---------------PSPDEILTTAHAIVLKVQGISSGIDLAASIHGGLICYQMPKY  167 (324)
Q Consensus       124 ~~---------------~~~~~i~~lA~~~E~~~~g~~sG~D~~a~~~Gg~i~~~~~~~  167 (324)
                      ..               .+.++++++|+.+|+.+||+|||+|+++|+|||+++|++++.
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~i~~lA~~~E~~~~g~~SG~D~a~~~~Gg~i~f~~g~~  221 (225)
T d1kvka1         163 EVTNPLKDRGSIGSWPEEDLKSINKWAYEGERVIHGNPSGVDNSVSTWGGALRYQQGKM  221 (225)
T ss_dssp             SSCCGGGGCCSEECCCHHHHHHHHHHHHHHHHHHHSSCCSHHHHHHHHCSEEEESSSCE
T ss_pred             CCCCCCCCCHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCEEEEECCCC
T ss_conf             66674211000034445559999999999999867997589899996696699958997


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S5 domain 2-like
superfamily: Ribosomal protein S5 domain 2-like
family: GHMP Kinase, N-terminal domain
domain: Mevalonate kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]