HHSEARCH alignment of GI: 254781017 and SCOP domain: d1kvka2

Alignment

Probab=99.94  E-value=6.6e-26  Score=180.23  Aligned_cols=144  Identities=22%  Similarity=0.285  Sum_probs=125.1

Q ss_pred             CCCCCEEECCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHC-------CCCHHHHHHHHHHHHHHH
Q ss_conf             7775267658417989999888998860823489999999840332078898730-------486445689999989999
Q gi|254781017|r  175 IFPIHLIYSGYKTPTAQVLKKISYIEIEYPEINEINQKIYALMGKLSQISCQALR-------NKNLKVLAQAMNRQQGLL  247 (324)
Q Consensus       175 ~~~l~l~~tg~~~~T~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~al~-------~~d~~~l~~lm~~~~~~L  247 (324)
                      +++++|+|||++++|+++++.|++++.++|+   ..+.+++.++.+++++.+++.       .+|++.|+++|+++|.+|
T Consensus         4 ~l~lll~~Tgv~r~T~~~v~~V~~~~~~~~~---~~~~~l~~~~~l~~~a~~~l~~~~~~~~~~d~~~lg~lm~~~~~lL   80 (169)
T d1kvka2           4 ALQILLTNTKVPRSTKALVAGVRSRLIKFPE---IMAPLLTSIDAISLECERVLGEMAAAPVPEQYLVLEELMDMNQHHL   80 (169)
T ss_dssp             CEEEEEEECCCCCCHHHHHHHHHHHHHHSHH---HHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHHHCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf             8379997699840599999999999985968---8999998875999999997642654301433999999999958888


Q ss_pred             HHHCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEEC-CCCCCCC
Q ss_conf             861678779999999999719945997268997548999846653268999999999977978999414-5456445
Q gi|254781017|r  248 ETLGVSDSKLSEIVWKLREQPHIMASKISGSGLGDCVIALGKGDLNSLPYQSVNCHMHAKGIDIVPITP-SHSTSLY  323 (324)
Q Consensus       248 ~~lgvs~~~l~~li~~~~~~~g~~~aklsGAG~GG~~i~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~  323 (324)
                      ++|+||+|++|++++.++.. | +|+|+||||||||+++|++++..+..++.+.++|...||+.+.+++ .+|.+++
T Consensus        81 ~~lgVS~~~ld~lv~~a~~~-g-~gaKltGAGgGGc~ial~~~~~~~~~~~~i~~~l~~~Gf~~~~~~i~~~Gv~i~  155 (169)
T d1kvka2          81 NALGVGHASLDQLCQVTAAH-G-LHSKLTGAGGGGCGITLLKPGLERAKVEAAKQALTGCGFDCWETSIGAPGVSMH  155 (169)
T ss_dssp             HHHTCCCHHHHHHHHHHHHT-T-CEEEECSSCSSSEEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEEESCCCSEEE
T ss_pred             HHCCCCHHHHHHHHHHHHHC-C-CCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCEEEE
T ss_conf             74176719999999999982-9-551014789887699985664239999999999997599589986589967994

SCOP domain information

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: GHMP Kinase, C-terminal domain
family: Mevalonate kinase
domain: Mevalonate kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]