HHSEARCH alignment of GI: 254781017 and SCOP domain: d1oj4a1

Alignment
>d1oj4a1 d.14.1.5 (A:1-163) 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase IspE {Escherichia coli [TaxId: 562]}
Probab=99.50  E-value=3.6e-13  Score=99.64  Aligned_cols=150  Identities=17%  Similarity=0.216  Sum_probs=106.9

Q ss_pred             CEEEEECCEEEEEE---------CCCEEECCCEEEEEEECCEEEEEEEECCCCEEEEEECCCCCCCCCCHHHCCCHHHHH
Q ss_conf             78999717049997---------435330894289877677289999986898499995364444656612015089999
Q gi|254781017|r    6 HKICVSAPGSLVLM---------GEHGVLHGHAALVFAINKRVILYLTLRKDRLINIDSSLGQYCGSLDLAMFHPSFSFI   76 (324)
Q Consensus         6 ~ki~~~aPGKv~L~---------GEh~v~~G~~ai~~aI~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~i   76 (324)
                      .|....||+||||+         |.|..    ..+-+.|+++.+++++..++..+.+........ ..+ +........+
T Consensus         1 m~~~~~apAKINL~L~V~~kr~dgyH~i----~S~~~~i~l~D~i~i~~~~~~~~~~~~~~~~~~-~~~-n~~~k~~~~l   74 (163)
T d1oj4a1           1 MRTQWPSPAKLNLFLYITGQRADGYHTL----QTLFQFLDYGDTISIELRDDGDIRLLTPVEGVE-HED-NLIVRAARLL   74 (163)
T ss_dssp             CEEEEEEEEEEEEEEEEEEECTTSCEEE----EEEEEEEEEEEEEEEEEESSSCEEECSCBTTBC-GGG-SHHHHHHHHH
T ss_pred             CCCCCCCCEEEEEEEEECCCCCCCCCEE----EEEEEEECCCCEEEEEECCCCCEEEECCCCCCC-CCC-CHHHHHHHHH
T ss_conf             9607766776884177677489996148----999999327869998862564225723766775-544-2577888889


Q ss_pred             HHHHH---HHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf             99999---718778738999826875354887402456655677764045666601455788887765214688754477
Q gi|254781017|r   77 IMAIN---HIKPSCGFDLKVISQLDSQLGLGSSAAITVAITAALLTLQYHKEPSPDEILTTAHAIVLKVQGISSGIDLAA  153 (324)
Q Consensus        77 ~~~l~---~~~~~~g~~i~i~s~iP~g~GLGSSaa~~va~~~al~~~~~~~~~~~~~i~~lA~~~E~~~~g~~sG~D~~a  153 (324)
                      .....   ++....+++|+++++||+++|||+.||-+++++++++.+ ++.+++.+++.++|..+         |.|+..
T Consensus        75 ~~~~~~~~~~~~~~~~~I~i~KnIP~gaGLGGGSsnAAa~L~~l~~~-~~~~l~~~~l~~ia~~i---------GsDvpf  144 (163)
T d1oj4a1          75 MKTAADSGRLPTGSGANISIDKRLPMGGGLGGGSSNAATVLVALNHL-WQCGLSMDELAEMGLTL---------GADVPV  144 (163)
T ss_dssp             HHHHHHTTCSCTTCEEEEEEECCSCSSTTSCHHHHHHHHHHHHHHHH-HTCCCCHHHHHHHHGGG---------CTTHHH
T ss_pred             HHHHHHHHHCCCCCCEEEEEEEEEEECCCCCCCCCHHHHHHHHHHCC-CCCCCCHHHHHHHHHHC---------CCCCCC
T ss_conf             98854444235577649999852565103568971599999986422-22379999999999880---------994143


Q ss_pred             HHCCCEEEEEECCCEEEE
Q ss_conf             662985899852751567
Q gi|254781017|r  154 SIHGGLICYQMPKYSIEK  171 (324)
Q Consensus       154 ~~~Gg~i~~~~~~~~~~~  171 (324)
                      +.+|+.-+.+.....+++
T Consensus       145 fl~~~~a~~~G~Ge~l~p  162 (163)
T d1oj4a1         145 FVRGHAAFAEGVGEILTP  162 (163)
T ss_dssp             HHHCBCEEEETTTTEEEE
T ss_pred             CCCCCCEEEEECCCEEEE
T ss_conf             205987899976977765


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S5 domain 2-like
superfamily: Ribosomal protein S5 domain 2-like
family: GHMP Kinase, N-terminal domain
domain: 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase IspE
species: Escherichia coli [TaxId: 562]