HHSEARCH alignment of GI: 254781017 and SCOP domain: d1oj4a2

Alignment
>d1oj4a2 d.58.26.5 (A:164-283) 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase IspE {Escherichia coli [TaxId: 562]}
Probab=96.15  E-value=0.0048  Score=35.54  Aligned_cols=89  Identities=17%  Similarity=0.151  Sum_probs=51.5

Q ss_pred             CCCCCEEECCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             77752676584179899998889988608234899999998403320788987304864456899999899998616787
Q gi|254781017|r  175 IFPIHLIYSGYKTPTAQVLKKISYIEIEYPEINEINQKIYALMGKLSQISCQALRNKNLKVLAQAMNRQQGLLETLGVSD  254 (324)
Q Consensus       175 ~~~l~l~~tg~~~~T~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~al~~~d~~~l~~lm~~~~~~L~~lgvs~  254 (324)
                      +..++|++.+...+|+++-+.....+.....  .+            +........+|++....-+             .
T Consensus         4 ~~~~llv~P~~~vST~~if~~~~l~~~~~~~--~~------------~~~~~~~~~Ndle~~~~~~-------------~   56 (120)
T d1oj4a2           4 EKWYLVAHPGVSIPTPVIFKDPELPRNTPKR--SI------------ETLLKCEFSNDCEVIARKR-------------F   56 (120)
T ss_dssp             CCEEEEECCSCCCCHHHHHTCTTSCCCCCCC--CH------------HHHHHSCCCBTTHHHHHHH-------------C
T ss_pred             CCEEEEECCCCCCCHHHHHHCCCCCCCCCCC--CH------------HHHHHHHCCCCHHHHHHHH-------------C
T ss_conf             8489998999995769998583757552415--69------------9998775049869999986-------------9


Q ss_pred             HHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEEECCCCCHH
Q ss_conf             79999999999719945997268997548999846653268
Q gi|254781017|r  255 SKLSEIVWKLREQPHIMASKISGSGLGDCVIALGKGDLNSL  295 (324)
Q Consensus       255 ~~l~~li~~~~~~~g~~~aklsGAG~GG~~i~l~~~~~~~~  295 (324)
                      |++.++.+.+... |  +++|||+|+  |++++.+++.++.
T Consensus        57 P~I~~~~~~L~~~-g--~~~MSGSGs--tvF~~f~~~~~a~   92 (120)
T d1oj4a2          57 REVDAVLSWLLEY-A--PSRLTGTGA--CVFAEFDTESEAR   92 (120)
T ss_dssp             HHHHHHHHHHTTT-S--CEEECTTSS--CEEEEESSHHHHH
T ss_pred             HHHHHHHHHHHHC-C--CCEECCCCC--EEEEEECCHHHHH
T ss_conf             8999999998656-4--544617877--7998858989999


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: GHMP Kinase, C-terminal domain
family: 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase IspE
domain: 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase IspE
species: Escherichia coli [TaxId: 562]