Query gi|254781017|ref|YP_003065430.1| GHMP kinase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 324
No_of_seqs 133 out of 2174
Neff 8.7
Searched_HMMs 13730
Date Wed Jun 1 11:12:29 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781017.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1piea1 d.14.1.5 (A:9-213) Gal 100.0 1.5E-34 1.1E-38 235.0 19.0 174 2-176 15-204 (205)
2 d1kvka1 d.14.1.5 (A:1-225) Mev 100.0 2.5E-35 1.8E-39 239.9 13.6 161 6-167 4-221 (225)
3 d1kkha1 d.14.1.5 (A:1-180) Mev 100.0 1.5E-34 1.1E-38 234.9 17.1 163 5-168 3-178 (180)
4 d1wuua1 d.14.1.5 (A:2-216) Gal 100.0 1.5E-33 1.1E-37 228.7 18.7 170 7-177 28-215 (215)
5 d1s4ea1 d.14.1.5 (A:5-180) Gal 100.0 2E-34 1.4E-38 234.2 10.3 166 9-175 1-175 (176)
6 d1k47a1 d.14.1.5 (A:1-194) Pho 100.0 3.5E-33 2.5E-37 226.3 15.4 158 8-166 2-166 (194)
7 d1kvka2 d.58.26.3 (A:226-394) 99.9 6.6E-26 4.8E-30 180.2 16.2 144 175-323 4-155 (169)
8 d1h72c1 d.14.1.5 (C:5-167) Hom 99.9 2.3E-21 1.7E-25 151.4 15.9 158 6-173 1-161 (163)
9 d1kkha2 d.58.26.3 (A:181-317) 99.8 1.3E-20 9.6E-25 146.7 12.7 123 178-317 14-136 (137)
10 d1k47a2 d.58.26.4 (A:195-329) 99.8 2.2E-20 1.6E-24 145.3 12.7 128 172-313 2-131 (135)
11 d1piea2 d.58.26.7 (A:214-396) 99.8 2.9E-19 2.1E-23 138.2 17.4 103 220-322 76-182 (183)
12 d1wuua2 d.58.26.7 (A:217-392) 99.8 2.7E-20 2E-24 144.7 10.8 102 220-322 71-173 (176)
13 d1s4ea2 d.58.26.7 (A:181-351) 99.8 3.8E-19 2.7E-23 137.5 13.5 100 220-320 67-170 (171)
14 d1oj4a1 d.14.1.5 (A:1-163) 4-( 99.5 3.6E-13 2.6E-17 99.6 13.9 150 6-171 1-162 (163)
15 d1ueka1 d.14.1.5 (A:1-148) 4-( 99.4 7.7E-12 5.6E-16 91.2 16.3 141 9-172 2-147 (148)
16 d1fi4a1 d.14.1.5 (A:3-190) Mev 98.8 8.5E-08 6.2E-12 65.6 13.5 148 5-166 1-169 (188)
17 d1h72c2 d.58.26.1 (C:168-300) 98.1 2.8E-05 2E-09 49.7 11.0 129 174-322 1-132 (133)
18 d1ueka2 d.58.26.5 (A:149-268) 97.5 7.5E-05 5.4E-09 47.0 5.4 108 175-308 3-110 (120)
19 d1oj4a2 d.58.26.5 (A:164-283) 96.1 0.0048 3.5E-07 35.5 5.5 89 175-295 4-92 (120)
20 d1fi4a2 d.58.26.2 (A:191-393) 81.8 1.3 9.5E-05 20.2 11.6 119 178-304 6-137 (203)
21 d1lb2b_ a.60.3.1 (B:) C-termin 60.1 2.8 0.0002 18.1 2.6 58 219-276 12-70 (72)
22 d1doqa_ a.60.3.1 (A:) C-termin 33.5 11 0.0008 14.3 3.2 49 219-267 14-63 (69)
23 d1vkra_ c.44.2.1 (A:) PTS syst 24.2 10 0.00075 14.5 0.7 20 100-119 11-30 (97)
24 d2pv7a1 a.100.1.12 (A:244-371) 24.1 16 0.0012 13.3 6.2 30 221-250 84-113 (128)
25 d1tdja2 d.58.18.2 (A:336-423) 23.2 17 0.0012 13.2 3.3 52 271-323 32-83 (88)
26 d2hs5a1 a.4.5.6 (A:25-93) Puta 22.1 14 0.001 13.6 1.1 56 220-279 7-62 (69)
No 1
>d1piea1 d.14.1.5 (A:9-213) Galactokinase {Lactococcus lactis [TaxId: 1358]}
Probab=100.00 E-value=1.5e-34 Score=234.99 Aligned_cols=174 Identities=20% Similarity=0.245 Sum_probs=144.3
Q ss_pred CCCCCEEEEECCEEEEEECCCEEECCCEEEEEEECCEEEEEEEECCCCEEEEEECCCCCCCCC----------CHHHCCC
Q ss_conf 988878999717049997435330894289877677289999986898499995364444656----------6120150
Q gi|254781017|r 2 GQCLHKICVSAPGSLVLMGEHGVLHGHAALVFAINKRVILYLTLRKDRLINIDSSLGQYCGSL----------DLAMFHP 71 (324)
Q Consensus 2 ~~~~~ki~~~aPGKv~L~GEh~v~~G~~ai~~aI~~~~~~~~~~~~~~~i~i~~~~~~~~~~~----------~~~~~~~ 71 (324)
|..+.-..++|||||+|+|||+||+|++||++|||+++++.+.+++++.+++.+...+..... ....|..
T Consensus 15 ~~~~~~~~~~aPgRv~L~GeH~Dy~gg~vl~~AI~~~~~v~~~~~~d~~i~i~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (205)
T d1piea1 15 GDTKEVEYFFSPGRINLIGEHTDYNGGYVFPASITIGTTGLARLREDKKVKLYSENFPKLGVIEFDLDEVEKKDGELWSN 94 (205)
T ss_dssp SCCCSCEEEEEEEEEEEECCSCTTTTCEEEEEEEEEEEEEEEEECSSSEEEEEETTCGGGCCEEEETTCTTSCCTTCTHH
T ss_pred CCCCCEEEEECCEEEEEECCCEEECCCEEECCCCCCEEEEEEECCCCCEEEEECCCCCCCCEEECCCCCCCCCCCCCHHH
T ss_conf 99865269974547998548805779775023440039999723788824553388886531311331124566652157
Q ss_pred HHHHHHHHHHHHC--CCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCC-
Q ss_conf 8999999999718--7787389998268753548874024566556777640456666014557888877652146887-
Q gi|254781017|r 72 SFSFIIMAINHIK--PSCGFDLKVISQLDSQLGLGSSAAITVAITAALLTLQYHKEPSPDEILTTAHAIVLKVQGISSG- 148 (324)
Q Consensus 72 ~~~~i~~~l~~~~--~~~g~~i~i~s~iP~g~GLGSSaa~~va~~~al~~~~~~~~~~~~~i~~lA~~~E~~~~g~~sG- 148 (324)
++..++..++... ...|++|.++|+||.|+|||||||++||+++++..+ .+.++++.+++++|+.+|+.++|.+||
T Consensus 95 ~~~~~i~~l~~~~~~~~~G~~i~i~s~iP~gsGLgSSAAl~va~~~al~~~-~~~~~~~~~ia~~a~~~E~~~~g~~~G~ 173 (205)
T d1piea1 95 YVKGMIVMLKGAGYEIDKGFELLIKGEIPTASGLSSSASLELLVGVVLDDL-FNLNVPRLELVQLGQKTENDYIGVNSGI 173 (205)
T ss_dssp HHHHHHHHHHHTTCCCCSCEEEEEEECSCTTSSSCHHHHHHHHHHHHHHHH-TTCCCCHHHHHHHHHHHHHHTTCCCCCS
T ss_pred HHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHH-HCCCCCHHHHHHHHHHHHHHHCCCCCCH
T ss_conf 899999999871786556767887168755245573178999999999998-3899877999999999998454898737
Q ss_pred HHHHHHHCCC---EEEEEECCCEEEEEECCC
Q ss_conf 5447766298---589985275156730477
Q gi|254781017|r 149 IDLAASIHGG---LICYQMPKYSIEKIDFIF 176 (324)
Q Consensus 149 ~D~~a~~~Gg---~i~~~~~~~~~~~~~~~~ 176 (324)
|||+++++|+ ++++++.+...+.+|+..
T Consensus 174 ~Dq~as~~g~~~~~~~~d~~~~~~~~ip~~l 204 (205)
T d1piea1 174 LDQFAIGFGEVKKAIELDCNTLKYEMVPVEL 204 (205)
T ss_dssp HHHHHHHHCBTTEEEEEETTTCCEEEEECCC
T ss_pred HHHHHHHHCCCCEEEEEECCCCCEEECCCCC
T ss_conf 8999998557884899977999678437656
No 2
>d1kvka1 d.14.1.5 (A:1-225) Mevalonate kinase {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=100.00 E-value=2.5e-35 Score=239.86 Aligned_cols=161 Identities=33% Similarity=0.423 Sum_probs=126.8
Q ss_pred CEEEEECCEEEEEECCCEEECCCEEEEEEECCEEEEEEEECCCCEEEEEECCCCCCCCCCHHH-------------CC--
Q ss_conf 789997170499974353308942898776772899999868984999953644446566120-------------15--
Q gi|254781017|r 6 HKICVSAPGSLVLMGEHGVLHGHAALVFAINKRVILYLTLRKDRLINIDSSLGQYCGSLDLAM-------------FH-- 70 (324)
Q Consensus 6 ~ki~~~aPGKv~L~GEh~v~~G~~ai~~aI~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~-------------~~-- 70 (324)
..+.||||||++|+|||+||+|++||++|||+|+++.+++++++.+.+.+...+.....+... ..
T Consensus 4 ~~~~vsAPGKv~L~GEh~v~~G~~al~~ai~~~~~v~v~~~~~~~v~i~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (225)
T d1kvka1 4 EVLLVSAPGKVILHGEHAVVHGKVALAVALNLRTFLVLRPQSNGKVSLNLPNVGIKQVWDVATLQLLDTGFLEQGDVPAP 83 (225)
T ss_dssp SCEEEEEEEEEEEECTTGGGGTCCEEEEEEEEEEEEEEEECSSSEEEEEETTTTEEEEEEHHHHHTSCC-----------
T ss_pred CEEEEEECEEEEEEECCEEECCCCEEEEEECCCEEEEEEECCCCEEEEEECCCCCCEEEECCCCCCCCCCCCCCCCCCCC
T ss_conf 70999954189998176255599889999512699999999999499997788862588623232123332123566763
Q ss_pred --------------------C------HHHHHHHHH-HHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf --------------------0------899999999-9718778738999826875354887402456655677764045
Q gi|254781017|r 71 --------------------P------SFSFIIMAI-NHIKPSCGFDLKVISQLDSQLGLGSSAAITVAITAALLTLQYH 123 (324)
Q Consensus 71 --------------------~------~~~~i~~~l-~~~~~~~g~~i~i~s~iP~g~GLGSSaa~~va~~~al~~~~~~ 123 (324)
. .+......+ .......|+++.++|++|.|+|||||||++||++.+++.+. +
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~i~s~lP~g~GLGSSAAl~va~~~al~~~~-~ 162 (225)
T d1kvka1 84 TLEQLEKLKKVAGLPRDCVGNEGLSLLAFLYLYLAICRKQRTLPSLDIMVWSELPPGAGLGSSAAYSVCVAAALLTAC-E 162 (225)
T ss_dssp -----CHHHHHHTSSCCCSCTTHHHHHHHHHHHHHHHTTSSSCCCEEEEEEESSCTTSSSCHHHHHHHHHHHHHHHHT-T
T ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHH-C
T ss_conf 145566676653034221002344789999999997502468898699996788887453521588999999999973-7
Q ss_pred CC---------------CCCHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCEEEEEECCC
Q ss_conf 66---------------660145578888776521468875447766298589985275
Q gi|254781017|r 124 KE---------------PSPDEILTTAHAIVLKVQGISSGIDLAASIHGGLICYQMPKY 167 (324)
Q Consensus 124 ~~---------------~~~~~i~~lA~~~E~~~~g~~sG~D~~a~~~Gg~i~~~~~~~ 167 (324)
.. .+.++++++|+.+|+.+||+|||+|+++|+|||+++|++++.
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~i~~lA~~~E~~~~g~~SG~D~a~~~~Gg~i~f~~g~~ 221 (225)
T d1kvka1 163 EVTNPLKDRGSIGSWPEEDLKSINKWAYEGERVIHGNPSGVDNSVSTWGGALRYQQGKM 221 (225)
T ss_dssp SSCCGGGGCCSEECCCHHHHHHHHHHHHHHHHHHHSSCCSHHHHHHHHCSEEEESSSCE
T ss_pred CCCCCCCCCHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCEEEEECCCC
T ss_conf 66674211000034445559999999999999867997589899996696699958997
No 3
>d1kkha1 d.14.1.5 (A:1-180) Mevalonate kinase {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=100.00 E-value=1.5e-34 Score=234.94 Aligned_cols=163 Identities=25% Similarity=0.366 Sum_probs=133.9
Q ss_pred CCEEEEECCEEEEEECCCEEECCCEEEEEEECCEEEEEEEECCCCEEEEEECCCCCCCCCCH-------HHCCCHHHH--
Q ss_conf 87899971704999743533089428987767728999998689849999536444465661-------201508999--
Q gi|254781017|r 5 LHKICVSAPGSLVLMGEHGVLHGHAALVFAINKRVILYLTLRKDRLINIDSSLGQYCGSLDL-------AMFHPSFSF-- 75 (324)
Q Consensus 5 ~~ki~~~aPGKv~L~GEh~v~~G~~ai~~aI~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~-------~~~~~~~~~-- 75 (324)
=.+|.+|||||++|+|||+||+|++||++|||+++++++++++++.+.+.+...+....... ......+++
T Consensus 3 ~~~~~~~aPgkv~L~GEh~~~~G~~~l~~aI~~~~~v~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (180)
T d1kkha1 3 GSHMIIETPSKVILFGEHAVVYGYRAISMAIDLTSTIEIKETQEDEIILNLNDLNKSLGLNLNEIKNINPNNFGDFKYCL 82 (180)
T ss_dssp TCCEEEEEEEEEEEECTTGGGGTCCEEEEEEEEEEEEEEEECCSSEEEEEETTTTEEEEEETTTGGGCCGGGSGGGHHHH
T ss_pred CCEEEEECCEEEEEECCCEEECCCEEEEEEEECEEEEEEEECCCCCCCEEEECCCCEEEECCHHCCCCCCCCHHHHHHHH
T ss_conf 97699983879999746868729879999970879999998898775214403464145420011235832003489999
Q ss_pred --HHHHHHHHC--CCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCHHH
Q ss_conf --999999718--7787389998268753548874024566556777640456666014557888877652146887544
Q gi|254781017|r 76 --IIMAINHIK--PSCGFDLKVISQLDSQLGLGSSAAITVAITAALLTLQYHKEPSPDEILTTAHAIVLKVQGISSGIDL 151 (324)
Q Consensus 76 --i~~~l~~~~--~~~g~~i~i~s~iP~g~GLGSSaa~~va~~~al~~~~~~~~~~~~~i~~lA~~~E~~~~g~~sG~D~ 151 (324)
+...++++. ...|++++++|++|.|+|||||||++||++.+|..+ ++.++++++++++|+++|+.+||++||+|+
T Consensus 83 ~~i~~~~~~~~~~~~~g~~i~i~s~iP~g~GLGSSaa~~va~~~al~~~-~~~~l~~~~l~~la~~~E~~~~g~~sg~D~ 161 (180)
T d1kkha1 83 CAIKNTLDYLNIEPKTGFKINISSKIPISCGLGSSASITIGTIKAVSGF-YNKELKDDEIAKLGYMVEKEIQGKASITDT 161 (180)
T ss_dssp HHHHHHHHHTTCCCCSCEEEEEEECSCSSSSSCHHHHHHHHHHHHHHHT-TTCCCCHHHHHHHHHHHHHHHSSSCCSHHH
T ss_pred HHHHHHHHHHCCCCCCCEEEEEECCCHHHCCCCCCCHHHHHHHHHHHHH-HCCCCCHHHHHHHHHHHHHHHCCCCCHHHH
T ss_conf 9999999985889998779999415010037565400399999999998-576799899999999999986899878999
Q ss_pred HHHHCCCEEEEEECCCE
Q ss_conf 77662985899852751
Q gi|254781017|r 152 AASIHGGLICYQMPKYS 168 (324)
Q Consensus 152 ~a~~~Gg~i~~~~~~~~ 168 (324)
++|+|||+++|++++..
T Consensus 162 ~~~~~Gg~i~~~~~~~~ 178 (180)
T d1kkha1 162 STITYKGILEIKNNKFR 178 (180)
T ss_dssp HHHHHCSEEEESSSCEE
T ss_pred HHHHHCCEEEEECCCEE
T ss_conf 99981997999579666
No 4
>d1wuua1 d.14.1.5 (A:2-216) Galactokinase {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00 E-value=1.5e-33 Score=228.68 Aligned_cols=170 Identities=22% Similarity=0.217 Sum_probs=140.6
Q ss_pred EEEEECCEEEEEECCCEEECCCEEEEEEECCEEEEEEEECCCCEEEEEECCCCCCCCC------------CHHHCCCHHH
Q ss_conf 8999717049997435330894289877677289999986898499995364444656------------6120150899
Q gi|254781017|r 7 KICVSAPGSLVLMGEHGVLHGHAALVFAINKRVILYLTLRKDRLINIDSSLGQYCGSL------------DLAMFHPSFS 74 (324)
Q Consensus 7 ki~~~aPGKv~L~GEh~v~~G~~ai~~aI~~~~~~~~~~~~~~~i~i~~~~~~~~~~~------------~~~~~~~~~~ 74 (324)
.+.++|||||+|+|||+||+|++||++|||+++++.+.+++++.+++.+......... ..........
T Consensus 28 ~~i~~APGrv~L~GEH~dy~Gg~vl~~Ai~~~~~v~~~~~~d~~i~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (215)
T d1wuua1 28 ELAVSAPGRVNLIGEHTDYNQGLVLPMALELMTVLVGSPRKDGLVSLLTTSEGADEPQRLQFPLPTAQRSLEPGTPRWAN 107 (215)
T ss_dssp SEEEEEEEEEEEECTTCGGGTCEEEEEEEEEEEEEEEEEETTCEEEEEECCSSSCSCSEEEEECCCSSCCCCCCSSGGGH
T ss_pred CEEEECCEEEEEECCCEEECCCEEEEEECCCCEEEEEEECCCCEEEEEECCCCCCCCEEEEECCCCCCCCCCCCCCHHHH
T ss_conf 78998556999965882657966776632673899998569987999986678775307851144101223446512666
Q ss_pred HHHHHHHHHC--CCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCC-HHH
Q ss_conf 9999999718--7787389998268753548874024566556777640456666014557888877652146887-544
Q gi|254781017|r 75 FIIMAINHIK--PSCGFDLKVISQLDSQLGLGSSAAITVAITAALLTLQYHKEPSPDEILTTAHAIVLKVQGISSG-IDL 151 (324)
Q Consensus 75 ~i~~~l~~~~--~~~g~~i~i~s~iP~g~GLGSSaa~~va~~~al~~~~~~~~~~~~~i~~lA~~~E~~~~g~~sG-~D~ 151 (324)
++...+..+. ...|+++.++|++|.|+|||||||++||++.+++.+ .+..+++++++++|+++|+.++|.+|| |||
T Consensus 108 ~~~~~~~~~~~~~~~g~~i~i~S~iP~gaGLgSSAA~~val~~al~~~-~~~~~~~~~la~~a~~~E~~~~G~~~G~mDq 186 (215)
T d1wuua1 108 YVKGVIQYYPAAPLPGFSAVVVSSVPLGGGLSSSASLEVATYTFLQQL-CPDSGTIAARAQVCQQAEHSFAGMPCGIMDQ 186 (215)
T ss_dssp HHHHHHHHCSSSCCCEEEEEEEECSCTTSSSCHHHHHHHHHHHHHHHH-SCCCSCHHHHHHHHHHHHHHHTCCCCCSHHH
T ss_pred HHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHH-HCCCCCHHHHHHHHHHHHHHHCCCCCCHHHH
T ss_conf 655667663257888758998257556764265068788889888887-4023447899999999999760798847899
Q ss_pred HHHHCCC---EEEEEECCCEEEEEECCCC
Q ss_conf 7766298---5899852751567304777
Q gi|254781017|r 152 AASIHGG---LICYQMPKYSIEKIDFIFP 177 (324)
Q Consensus 152 ~a~~~Gg---~i~~~~~~~~~~~~~~~~~ 177 (324)
++|+||+ ++++++.+...+.++++.|
T Consensus 187 ~as~~g~~~~~~~id~~~~~~~~vp~~~p 215 (215)
T d1wuua1 187 FISLMGQKGHALLIDCRSLETSLVPLSDP 215 (215)
T ss_dssp HHHHHCCTTEEEEEETTTCCEEEEECCCS
T ss_pred HHHHHCCCCEEEEEECCCCCEEEECCCCC
T ss_conf 99981778849999879995786038999
No 5
>d1s4ea1 d.14.1.5 (A:5-180) Galactokinase {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=100.00 E-value=2e-34 Score=234.19 Aligned_cols=166 Identities=22% Similarity=0.219 Sum_probs=132.5
Q ss_pred EEECCEEEEEECCCEEECCCEEEEEEECCEEEEEEEECCCCEEEEEECCCCCCCCCC----HHHCCCHHHHHHHHH-HHH
Q ss_conf 997170499974353308942898776772899999868984999953644446566----120150899999999-971
Q gi|254781017|r 9 CVSAPGSLVLMGEHGVLHGHAALVFAINKRVILYLTLRKDRLINIDSSLGQYCGSLD----LAMFHPSFSFIIMAI-NHI 83 (324)
Q Consensus 9 ~~~aPGKv~L~GEh~v~~G~~ai~~aI~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~----~~~~~~~~~~i~~~l-~~~ 83 (324)
+|||||||+|+|||+||+|++||++||+++++++++++++..+...+.......... ...|......+...+ +..
T Consensus 1 tv~aPgRi~l~GeH~Dy~gg~vl~~AI~~~~~v~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (176)
T d1s4ea1 1 TVKSPGRVNLIGEHTDYTYGYVMPMAIDLYTIITAEKYDKVQLYSEHFNEEKTFTLDNLTKEGSWIDYVKGVLWVLIQEG 80 (176)
T ss_dssp CEEEEEEEESSCCSCGGGTCEECEEEEEEEEEEC----CCBCCCBTTTTC-C---CC-CCCCSSTHHHHHHHHHHHHHTT
T ss_pred CCCCCEEEEEECCCEEECCCEEEEEEEEEEEEEEEECCCCEEEEECCCCCCEEEEECCCCCCCCCHHHEEHHHHHHHHHC
T ss_conf 92257899987168134898988588665899999816643788425775024651033235662021200123346631
Q ss_pred CCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCC-HHHHHHHCCC---E
Q ss_conf 87787389998268753548874024566556777640456666014557888877652146887-5447766298---5
Q gi|254781017|r 84 KPSCGFDLKVISQLDSQLGLGSSAAITVAITAALLTLQYHKEPSPDEILTTAHAIVLKVQGISSG-IDLAASIHGG---L 159 (324)
Q Consensus 84 ~~~~g~~i~i~s~iP~g~GLGSSaa~~va~~~al~~~~~~~~~~~~~i~~lA~~~E~~~~g~~sG-~D~~a~~~Gg---~ 159 (324)
....|++|.++|+||.|+|||||||++||+++|++.+ ++.++++++++++|+.+|+.++|.+|| |||++++||| +
T Consensus 81 ~~~~g~~i~i~s~iP~gsGLgSSAAl~va~~~al~~~-~~~~~~~~~l~~~a~~~E~~~~g~~~G~~Dq~~~~~gg~~~~ 159 (176)
T d1s4ea1 81 YKIGGLKGKITGDLPLGAGLSSSASFEVGILEVLNQL-YNLNIDPLKKALLAKKAENEFVGVPCGILDQFAVVFGKKDNV 159 (176)
T ss_dssp CCCCCBC-CEEESSCTTSSSCHHHHHHHHHHHHHHHH-TTCCCCHHHHHHHHHHHHHHTSCCCCCSHHHHHHHHCCTTEE
T ss_pred CCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHH-HHCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCEE
T ss_conf 5677848998357456766456078999999999998-523699899999999998876289865487999985688879
Q ss_pred EEEEECCCEEEEEECC
Q ss_conf 8998527515673047
Q gi|254781017|r 160 ICYQMPKYSIEKIDFI 175 (324)
Q Consensus 160 i~~~~~~~~~~~~~~~ 175 (324)
+++++++..++.+++|
T Consensus 160 ~~~d~~~~~~~~i~~P 175 (176)
T d1s4ea1 160 IFLDTQTLQYEYIPFP 175 (176)
T ss_dssp EEEETTTTEEEEEECC
T ss_pred EEEECCCCCEEECCCC
T ss_conf 9986799978866899
No 6
>d1k47a1 d.14.1.5 (A:1-194) Phosphomevalonate kinase (PMK) {Streptococcus pneumoniae r6 [TaxId: 171101]}
Probab=100.00 E-value=3.5e-33 Score=226.27 Aligned_cols=158 Identities=23% Similarity=0.237 Sum_probs=129.3
Q ss_pred EEEECCEEEEEECCCEEEC-CCEEEEEEECCEEEEEEEECCCCEEEEEECCCCCCCCCC--HHHCCCHHHHHHHHHHHHC
Q ss_conf 9997170499974353308-942898776772899999868984999953644446566--1201508999999999718
Q gi|254781017|r 8 ICVSAPGSLVLMGEHGVLH-GHAALVFAINKRVILYLTLRKDRLINIDSSLGQYCGSLD--LAMFHPSFSFIIMAINHIK 84 (324)
Q Consensus 8 i~~~aPGKv~L~GEh~v~~-G~~ai~~aI~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~--~~~~~~~~~~i~~~l~~~~ 84 (324)
|.++||||++|+|||+|+| |++||++|||+|++++++++++..+...+.........+ ..........+...++...
T Consensus 2 i~v~apGK~iL~GE~aVv~~G~~ala~ai~~~~~v~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (194)
T d1k47a1 2 IAVKTCGKLYWAGEYAILEPGQLALIKDIPIYMRAEIAFSDSYRIYSDMFDFAVDLRPNPDYSLIQETIALMGDFLAVRG 81 (194)
T ss_dssp EEEEEEEEEEEECTTGGGSTTCEEEEEEEEEEEEEEEEECSSCEEEEEC---------CCCHHHHHHHHHHHHHHHHHTT
T ss_pred EEEEECCEEEEEEEEEEECCCCEEEEEEEECEEEEEEEECCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCC
T ss_conf 69996848999966289608981999998045999999888862775203433112567411688999999999999708
Q ss_pred -CCCCEEEEEECCCCCCC---CCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCEE
Q ss_conf -77873899982687535---48874024566556777640456666014557888877652146887544776629858
Q gi|254781017|r 85 -PSCGFDLKVISQLDSQL---GLGSSAAITVAITAALLTLQYHKEPSPDEILTTAHAIVLKVQGISSGIDLAASIHGGLI 160 (324)
Q Consensus 85 -~~~g~~i~i~s~iP~g~---GLGSSaa~~va~~~al~~~~~~~~~~~~~i~~lA~~~E~~~~g~~sG~D~~a~~~Gg~i 160 (324)
+..++++.++|++|.++ |||||||++||++.+++++ ++..+++++++++|+.+|+.+||++||+|++||+|||++
T Consensus 82 ~~~~~~~i~i~s~ip~~~~~~GLGSSAA~~va~~~al~~~-~~~~ls~~~i~~lA~~~e~~~~g~~SG~D~a~s~~GG~i 160 (194)
T d1k47a1 82 QNLRPFSLAIYGKMEREGKKFGLGSSGSVVVLVVKALLAL-YNLSVDQNLLFKLTSAVLLKRGDNGSMGDLACIAAEDLV 160 (194)
T ss_dssp CCCCCEEEEEESHHHHSTTSSCSCHHHHHHHHHHHHHHHH-TTCCCCHHHHHHHHHHHHHHTTCCSCCHHHHHHHHTSCE
T ss_pred CCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHH-HCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEE
T ss_conf 9888718999746866667776442278999999999987-077899999999999999986358885334588749849
Q ss_pred EEEECC
Q ss_conf 998527
Q gi|254781017|r 161 CYQMPK 166 (324)
Q Consensus 161 ~~~~~~ 166 (324)
+|+..+
T Consensus 161 ~y~~~~ 166 (194)
T d1k47a1 161 LYQSFD 166 (194)
T ss_dssp EEECCC
T ss_pred EEEECC
T ss_conf 998278
No 7
>d1kvka2 d.58.26.3 (A:226-394) Mevalonate kinase {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=99.94 E-value=6.6e-26 Score=180.23 Aligned_cols=144 Identities=22% Similarity=0.285 Sum_probs=125.1
Q ss_pred CCCCCEEECCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHC-------CCCHHHHHHHHHHHHHHH
Q ss_conf 7775267658417989999888998860823489999999840332078898730-------486445689999989999
Q gi|254781017|r 175 IFPIHLIYSGYKTPTAQVLKKISYIEIEYPEINEINQKIYALMGKLSQISCQALR-------NKNLKVLAQAMNRQQGLL 247 (324)
Q Consensus 175 ~~~l~l~~tg~~~~T~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~al~-------~~d~~~l~~lm~~~~~~L 247 (324)
+++++|+|||++++|+++++.|++++.++|+ ..+.+++.++.+++++.+++. .+|++.|+++|+++|.+|
T Consensus 4 ~l~lll~~Tgv~r~T~~~v~~V~~~~~~~~~---~~~~~l~~~~~l~~~a~~~l~~~~~~~~~~d~~~lg~lm~~~~~lL 80 (169)
T d1kvka2 4 ALQILLTNTKVPRSTKALVAGVRSRLIKFPE---IMAPLLTSIDAISLECERVLGEMAAAPVPEQYLVLEELMDMNQHHL 80 (169)
T ss_dssp CEEEEEEECCCCCCHHHHHHHHHHHHHHSHH---HHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHHCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf 8379997699840599999999999985968---8999998875999999997642654301433999999999958888
Q ss_pred HHHCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEEC-CCCCCCC
Q ss_conf 861678779999999999719945997268997548999846653268999999999977978999414-5456445
Q gi|254781017|r 248 ETLGVSDSKLSEIVWKLREQPHIMASKISGSGLGDCVIALGKGDLNSLPYQSVNCHMHAKGIDIVPITP-SHSTSLY 323 (324)
Q Consensus 248 ~~lgvs~~~l~~li~~~~~~~g~~~aklsGAG~GG~~i~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 323 (324)
++|+||+|++|++++.++.. | +|+|+||||||||+++|++++..+..++.+.++|...||+.+.+++ .+|.+++
T Consensus 81 ~~lgVS~~~ld~lv~~a~~~-g-~gaKltGAGgGGc~ial~~~~~~~~~~~~i~~~l~~~Gf~~~~~~i~~~Gv~i~ 155 (169)
T d1kvka2 81 NALGVGHASLDQLCQVTAAH-G-LHSKLTGAGGGGCGITLLKPGLERAKVEAAKQALTGCGFDCWETSIGAPGVSMH 155 (169)
T ss_dssp HHHTCCCHHHHHHHHHHHHT-T-CEEEECSSCSSSEEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEEESCCCSEEE
T ss_pred HHCCCCHHHHHHHHHHHHHC-C-CCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCEEEE
T ss_conf 74176719999999999982-9-551014789887699985664239999999999997599589986589967994
No 8
>d1h72c1 d.14.1.5 (C:5-167) Homoserine kinase {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=99.87 E-value=2.3e-21 Score=151.44 Aligned_cols=158 Identities=18% Similarity=0.176 Sum_probs=125.1
Q ss_pred CEEEEECCEEEEEECCCEEECCCEEEEEEECC-EEEEEEEECCCCEEEEEECCCCCCCCCCHHHCCCHH-HHHHHHHHHH
Q ss_conf 78999717049997435330894289877677-289999986898499995364444656612015089-9999999971
Q gi|254781017|r 6 HKICVSAPGSLVLMGEHGVLHGHAALVFAINK-RVILYLTLRKDRLINIDSSLGQYCGSLDLAMFHPSF-SFIIMAINHI 83 (324)
Q Consensus 6 ~ki~~~aPGKv~L~GEh~v~~G~~ai~~aI~~-~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~-~~i~~~l~~~ 83 (324)
.||.+|+|++.--.| -|++++.+||+. |.+++++++++..+.++....+... +..++.. ..+....+.+
T Consensus 1 m~i~v~~Pas~aNlg-----~GFD~lg~Al~~~~d~v~v~~~~~~~i~i~~~~~~i~~----~~~~n~~~~~~~~~~~~~ 71 (163)
T d1h72c1 1 MKVRVKAPCTSANLG-----VGFDVFGLCLKEPYDVIEVEAIDDKEIIIEVDDKNIPT----DPDKNVAGIVAKKMIDDF 71 (163)
T ss_dssp CEEEEEEEEEEECTG-----GGTTTEEEEEEEEEEEEEEEEESSSSEEEEESCTTSCC----CTTTSHHHHHHHHHHHHT
T ss_pred CEEEEEEECCHHHCC-----CCHHHHHHHHCCCCCEEEEEECCCCEEEEEECCCCCCC----CHHHHHHHHHHHHHHHHC
T ss_conf 979999833077555-----46767651224786589999978982899744852577----544224789988899862
Q ss_pred CCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCEEEEE
Q ss_conf 87787389998268753548874024566556777640456666014557888877652146887544776629858998
Q gi|254781017|r 84 KPSCGFDLKVISQLDSQLGLGSSAAITVAITAALLTLQYHKEPSPDEILTTAHAIVLKVQGISSGIDLAASIHGGLICYQ 163 (324)
Q Consensus 84 ~~~~g~~i~i~s~iP~g~GLGSSaa~~va~~~al~~~~~~~~~~~~~i~~lA~~~E~~~~g~~sG~D~~a~~~Gg~i~~~ 163 (324)
....+++++++++||.++|||||||.++|++.+++.+ ++.++++++++++|.++|...+|.++|-|.++|.|||++...
T Consensus 72 ~~~~~~~i~i~~~IP~gaGLGsSSA~a~a~l~aln~l-~~~~ls~~~l~~~A~~~e~~~~g~~~gddv~~~~~GG~~~~~ 150 (163)
T d1h72c1 72 NIGKGVKITIKKGVKAGSGLGSSAASSAGTAYAINEL-FKLNLDKLKLVDYASYGELASSGAKHADNVAPAIFGGFTMVT 150 (163)
T ss_dssp TCCCEEEEEEECSSCTTSSSCHHHHHHHHHHHHHHHH-TTCCCCHHHHHHHHHHHHHHHHSSCCCTTHHHHHHCSEEEEE
T ss_pred CCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHH-HCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCEEEEE
T ss_conf 9987789999606413566575078899999999998-379989799999999987765378771476787609979992
Q ss_pred ECC-CEEEEEE
Q ss_conf 527-5156730
Q gi|254781017|r 164 MPK-YSIEKID 173 (324)
Q Consensus 164 ~~~-~~~~~~~ 173 (324)
..+ ..+..+|
T Consensus 151 ~~~~~~~~~~P 161 (163)
T d1h72c1 151 NYEPLEVLHIP 161 (163)
T ss_dssp ETTTTEEEEEC
T ss_pred CCCCCCEEECC
T ss_conf 48887068189
No 9
>d1kkha2 d.58.26.3 (A:181-317) Mevalonate kinase {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=99.84 E-value=1.3e-20 Score=146.70 Aligned_cols=123 Identities=24% Similarity=0.350 Sum_probs=98.6
Q ss_pred CCEEECCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHH
Q ss_conf 52676584179899998889988608234899999998403320788987304864456899999899998616787799
Q gi|254781017|r 178 IHLIYSGYKTPTAQVLKKISYIEIEYPEINEINQKIYALMGKLSQISCQALRNKNLKVLAQAMNRQQGLLETLGVSDSKL 257 (324)
Q Consensus 178 l~l~~tg~~~~T~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~al~~~d~~~l~~lm~~~~~~L~~lgvs~~~l 257 (324)
+++.+++.+++|+++++.|+... ...++ +..+..++ .+|++.+|++.||++|+++|.+|++||||+|++
T Consensus 14 Lv~~~t~~~~~t~~~v~~v~~~~----~~~~i----~~~~~~~~---~~al~~~d~~~lg~lm~~~~~~l~~lgvs~~~i 82 (137)
T d1kkha2 14 LIVYAEKRKKKTAELVNEVAKIE----NKDEI----FKEIDKVI---DEALKIKNKEDFGKLMTKNHELLKKLNISTPKL 82 (137)
T ss_dssp EEEEEECCCSCHHHHHHHHHTCT----THHHH----HHHHHHHH---HHHHHCCSHHHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH----HHHHH----HHHHHHHH---HHHHHCCCHHHHHHHHHHHHHHHHHHCCCCHHH
T ss_conf 99973683342999999999997----62299----99999999---999982899999999999999998705895899
Q ss_pred HHHHHHHHHCCCCEEEECCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEECC
Q ss_conf 999999997199459972689975489998466532689999999999779789994145
Q gi|254781017|r 258 SEIVWKLREQPHIMASKISGSGLGDCVIALGKGDLNSLPYQSVNCHMHAKGIDIVPITPS 317 (324)
Q Consensus 258 ~~li~~~~~~~g~~~aklsGAG~GG~~i~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 317 (324)
|.+++.+++. | +|+|+||||+|||+++|++++.. +.+.+.|.++|++++.++-.
T Consensus 83 d~l~~~~~~~-g-~GaKitGAGgGG~~ial~~~~~~----~~~~~~l~~~~~~~f~~~~~ 136 (137)
T d1kkha2 83 DRIVDIGNRF-G-FGAKLTGAGGGGCVIILVNEEKE----KELLKELNKEDVRIFNCRMM 136 (137)
T ss_dssp HHHHHHHHHH-S-SEEEECSSSSSEEEEEECCGGGH----HHHHHHHHTSSCEEEEECBC
T ss_pred HHHHHHHHHC-C-CCCCCCCCCCCCEEEEEECHHHH----HHHHHHHHHCCCHHEEEECC
T ss_conf 9999999853-8-87420158998179998573549----99999999818301322547
No 10
>d1k47a2 d.58.26.4 (A:195-329) Phosphomevalonate kinase (PMK) {Streptococcus pneumoniae r6 [TaxId: 171101]}
Probab=99.84 E-value=2.2e-20 Score=145.30 Aligned_cols=128 Identities=16% Similarity=0.178 Sum_probs=106.0
Q ss_pred EECCCCCCEEECCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 30477752676584179899998889988608234899999998403320788987304864456899999899998616
Q gi|254781017|r 172 IDFIFPIHLIYSGYKTPTAQVLKKISYIEIEYPEINEINQKIYALMGKLSQISCQALRNKNLKVLAQAMNRQQGLLETLG 251 (324)
Q Consensus 172 ~~~~~~l~l~~tg~~~~T~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~al~~~d~~~l~~lm~~~~~~L~~lg 251 (324)
.+++.+|+++|||.+++|+++++.|.+.+ + +.++..+..+++++.++|+++|++.|+++|+++|.+|++++
T Consensus 2 ~~l~~~lll~~TG~~~sT~~lv~~v~~~~--~-------~~~l~~~~~~v~~~~~al~~~d~~~l~~~m~~~~~ll~~l~ 72 (135)
T d1k47a2 2 PTLECDFLVGWTKEVAVSSHMVQQIKQNI--N-------QNFLTSSKETVVSLVEALEQGKSEKIIEQVEVASKLLEGLS 72 (135)
T ss_dssp CCSCCEEEEEECCCCCCCHHHHHHHHTTC--C-------HHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHH--H-------HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCC
T ss_conf 99986389984499354799999999997--7-------67999999999999999992877999999999999998635
Q ss_pred --CCCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCEEEE
Q ss_conf --78779999999999719945997268997548999846653268999999999977978999
Q gi|254781017|r 252 --VSDSKLSEIVWKLREQPHIMASKISGSGLGDCVIALGKGDLNSLPYQSVNCHMHAKGIDIVP 313 (324)
Q Consensus 252 --vs~~~l~~li~~~~~~~g~~~aklsGAG~GG~~i~l~~~~~~~~~~~~~~~~~~~~g~~~~~ 313 (324)
+|+|+++++++.+. ..| .++|+||||||||+++|+++. ...+.+.+.|.+.|++.+-
T Consensus 73 ~~i~~~~l~~l~~~a~-~~g-~~ak~~GaGgGG~~i~l~~~~---~~~~~i~~~~~~~Gi~~~~ 131 (135)
T d1k47a2 73 TDIYTPLLRQLKEASQ-DLQ-AVAKSSGAGGGDCGIALSFDA---QSTKTLKNRWADLGIELLY 131 (135)
T ss_dssp TTTSCHHHHHHHHTTT-TSS-EEEEECSSCSSSEEEEEECSH---HHHHHHHHHHHHTTCEEEE
T ss_pred CCCCCHHHHHHHHHHH-HHC-CCHHCCCCCCCCEEEEEECCH---HHHHHHHHHHHHCCCHHHH
T ss_conf 5678807899999999-706-002014676788589986283---1499999999987987660
No 11
>d1piea2 d.58.26.7 (A:214-396) Galactokinase {Lactococcus lactis [TaxId: 1358]}
Probab=99.83 E-value=2.9e-19 Score=138.16 Aligned_cols=103 Identities=19% Similarity=0.282 Sum_probs=89.8
Q ss_pred CCHHHHHHHCCCCHHHHHHHHHHHHHHHHH-HCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEEECCCCCHHHHH
Q ss_conf 207889873048644568999998999986-1678779999999999719945997268997548999846653268999
Q gi|254781017|r 220 LSQISCQALRNKNLKVLAQAMNRQQGLLET-LGVSDSKLSEIVWKLREQPHIMASKISGSGLGDCVIALGKGDLNSLPYQ 298 (324)
Q Consensus 220 i~~~~~~al~~~d~~~l~~lm~~~~~~L~~-lgvs~~~l~~li~~~~~~~g~~~aklsGAG~GG~~i~l~~~~~~~~~~~ 298 (324)
.+.++.+||+++|++.||++|+++|.+|++ +++|+|++|.|++.+.+.+|++|+||||+|||||+++|++.+..+.+.+
T Consensus 76 Rv~~a~~al~~~d~~~~G~lm~~Sh~sl~~~~evs~~elD~Lv~~a~~~~G~~GaRmtGgGfGGcvialv~~~~~~~~~~ 155 (183)
T d1piea2 76 RTKIAQKAFVAGNLTKFGELLNASHASLKDDYEVTGLELDTLAETAQKQAGVLGARMTGAGFGGCAIALVAHDNVSAFRK 155 (183)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHHSTTEEEEEECSSCSSSEEEEEEEGGGHHHHHH
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCEEEECCCCCCCCEEEEEECHHHHHHHHH
T ss_conf 87875655530359999999999899999973379915889999999737990864453688846899965877999999
Q ss_pred HHHHHHHH-CCCE--EEEEECCCCCCC
Q ss_conf 99999997-7978--999414545644
Q gi|254781017|r 299 SVNCHMHA-KGID--IVPITPSHSTSL 322 (324)
Q Consensus 299 ~~~~~~~~-~g~~--~~~~~~~~~~~~ 322 (324)
.+...+.+ .|.. ++...|+.|...
T Consensus 156 ~i~~~y~~~~g~~~~~~~~~~~~Ga~~ 182 (183)
T d1piea2 156 AVGQVYEEVVGYPASFYVAQIGSGSTK 182 (183)
T ss_dssp HHHHHHHHHHSSCCEEEECCBCCCSBC
T ss_pred HHHHHHHHHHCCCCCEEEEECCCCCEE
T ss_conf 999999996199983899866898423
No 12
>d1wuua2 d.58.26.7 (A:217-392) Galactokinase {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.82 E-value=2.7e-20 Score=144.74 Aligned_cols=102 Identities=17% Similarity=0.285 Sum_probs=86.3
Q ss_pred CCHHHHHHHCCCCHHHHHHHHHHHHHHHH-HHCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEEECCCCCHHHHH
Q ss_conf 20788987304864456899999899998-61678779999999999719945997268997548999846653268999
Q gi|254781017|r 220 LSQISCQALRNKNLKVLAQAMNRQQGLLE-TLGVSDSKLSEIVWKLREQPHIMASKISGSGLGDCVIALGKGDLNSLPYQ 298 (324)
Q Consensus 220 i~~~~~~al~~~d~~~l~~lm~~~~~~L~-~lgvs~~~l~~li~~~~~~~g~~~aklsGAG~GG~~i~l~~~~~~~~~~~ 298 (324)
.+..+.+|++++|++.||++|+++|..|+ .+++|+|++|.+++.+++.+|++|+||||||||||+++|++++..+..++
T Consensus 71 Rv~~~~~al~~~d~~~lg~Lm~~sh~sL~~~~~vS~peld~lv~~a~~~~G~lGaRltGaGfGGcviaLv~~~~~~~~~~ 150 (176)
T d1wuua2 71 RTAQAAAALRRGDYRAFGRLMVESHRSLRDDYEVSCPELDQLVEAALAVPGVYGSRMTGGGFGGCTVTLLEASAAPHAMR 150 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHTSTTEEEEEECSSCSEEEEEEEEEGGGHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCEEEEEECHHHHHHHHH
T ss_conf 66778777622689999999999999999988546866999999999649995525404898707999955356999999
Q ss_pred HHHHHHHHCCCEEEEEECCCCCCC
Q ss_conf 999999977978999414545644
Q gi|254781017|r 299 SVNCHMHAKGIDIVPITPSHSTSL 322 (324)
Q Consensus 299 ~~~~~~~~~g~~~~~~~~~~~~~~ 322 (324)
.+.+.+. ..-..+...|+.|+.+
T Consensus 151 ~~~~~yg-~~~~~~~~~~~~Ga~~ 173 (176)
T d1wuua2 151 HIQEHYG-GTATFYLSQAADGAKV 173 (176)
T ss_dssp HHHHHCS-SCCEEEEECCCCCSEE
T ss_pred HHHHHHC-CCCCEEEEECCCCCEE
T ss_conf 9999848-9987899866898067
No 13
>d1s4ea2 d.58.26.7 (A:181-351) Galactokinase {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=99.81 E-value=3.8e-19 Score=137.48 Aligned_cols=100 Identities=19% Similarity=0.171 Sum_probs=86.0
Q ss_pred CCHHHHHHHCCCCHHHHHHHHHHHHHHHHH-HCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEEECCCCCHHHHH
Q ss_conf 207889873048644568999998999986-1678779999999999719945997268997548999846653268999
Q gi|254781017|r 220 LSQISCQALRNKNLKVLAQAMNRQQGLLET-LGVSDSKLSEIVWKLREQPHIMASKISGSGLGDCVIALGKGDLNSLPYQ 298 (324)
Q Consensus 220 i~~~~~~al~~~d~~~l~~lm~~~~~~L~~-lgvs~~~l~~li~~~~~~~g~~~aklsGAG~GG~~i~l~~~~~~~~~~~ 298 (324)
.+.++.+||+++|++.||++|+++|.+|++ +++|+|++|.+++.+.+ .|++|+||||+|||||+++|++.+..+.+++
T Consensus 67 Rv~~~~~al~~~d~~~~G~lm~~sh~sl~~~~evS~~eld~lv~~a~~-~Ga~GaRmtGgGfGG~viaLv~~~~~~~~~~ 145 (171)
T d1s4ea2 67 RVLEVRDALKEGDIEKVGKILTTAHWDLAENYRVSCEELDFFVKKAME-LGAYGARLTGAGFGGSAIALVDKDKAKTIGD 145 (171)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH-TTCSEEEECSSCSEEEEEEEEEGGGHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-CCCCCEEEECCCCCCEEEEEECHHHHHHHHH
T ss_conf 778899986415588999999999998988560588789999999864-3667425523899807999855777999999
Q ss_pred HHHHHHHH-CCCE--EEEEECCCCC
Q ss_conf 99999997-7978--9994145456
Q gi|254781017|r 299 SVNCHMHA-KGID--IVPITPSHST 320 (324)
Q Consensus 299 ~~~~~~~~-~g~~--~~~~~~~~~~ 320 (324)
.+.+.+.+ .|.. ++.+.|+.|.
T Consensus 146 ~i~~~y~~~~~~~~~~~~~~p~~Ga 170 (171)
T d1s4ea2 146 AILREYLAKFSWKAKYFVVKPSDGV 170 (171)
T ss_dssp HHHHHHHHHCCSCCEEEEECBCCCC
T ss_pred HHHHHHHHHCCCCCCEEEEECCCCC
T ss_conf 9999999851999877997468999
No 14
>d1oj4a1 d.14.1.5 (A:1-163) 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase IspE {Escherichia coli [TaxId: 562]}
Probab=99.50 E-value=3.6e-13 Score=99.64 Aligned_cols=150 Identities=17% Similarity=0.216 Sum_probs=106.9
Q ss_pred CEEEEECCEEEEEE---------CCCEEECCCEEEEEEECCEEEEEEEECCCCEEEEEECCCCCCCCCCHHHCCCHHHHH
Q ss_conf 78999717049997---------435330894289877677289999986898499995364444656612015089999
Q gi|254781017|r 6 HKICVSAPGSLVLM---------GEHGVLHGHAALVFAINKRVILYLTLRKDRLINIDSSLGQYCGSLDLAMFHPSFSFI 76 (324)
Q Consensus 6 ~ki~~~aPGKv~L~---------GEh~v~~G~~ai~~aI~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~i 76 (324)
.|....||+||||+ |.|.. ..+-+.|+++.+++++..++..+.+........ ..+ +........+
T Consensus 1 m~~~~~apAKINL~L~V~~kr~dgyH~i----~S~~~~i~l~D~i~i~~~~~~~~~~~~~~~~~~-~~~-n~~~k~~~~l 74 (163)
T d1oj4a1 1 MRTQWPSPAKLNLFLYITGQRADGYHTL----QTLFQFLDYGDTISIELRDDGDIRLLTPVEGVE-HED-NLIVRAARLL 74 (163)
T ss_dssp CEEEEEEEEEEEEEEEEEEECTTSCEEE----EEEEEEEEEEEEEEEEEESSSCEEECSCBTTBC-GGG-SHHHHHHHHH
T ss_pred CCCCCCCCEEEEEEEEECCCCCCCCCEE----EEEEEEECCCCEEEEEECCCCCEEEECCCCCCC-CCC-CHHHHHHHHH
T ss_conf 9607766776884177677489996148----999999327869998862564225723766775-544-2577888889
Q ss_pred HHHHH---HHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf 99999---718778738999826875354887402456655677764045666601455788887765214688754477
Q gi|254781017|r 77 IMAIN---HIKPSCGFDLKVISQLDSQLGLGSSAAITVAITAALLTLQYHKEPSPDEILTTAHAIVLKVQGISSGIDLAA 153 (324)
Q Consensus 77 ~~~l~---~~~~~~g~~i~i~s~iP~g~GLGSSaa~~va~~~al~~~~~~~~~~~~~i~~lA~~~E~~~~g~~sG~D~~a 153 (324)
..... ++....+++|+++++||+++|||+.||-+++++++++.+ ++.+++.+++.++|..+ |.|+..
T Consensus 75 ~~~~~~~~~~~~~~~~~I~i~KnIP~gaGLGGGSsnAAa~L~~l~~~-~~~~l~~~~l~~ia~~i---------GsDvpf 144 (163)
T d1oj4a1 75 MKTAADSGRLPTGSGANISIDKRLPMGGGLGGGSSNAATVLVALNHL-WQCGLSMDELAEMGLTL---------GADVPV 144 (163)
T ss_dssp HHHHHHTTCSCTTCEEEEEEECCSCSSTTSCHHHHHHHHHHHHHHHH-HTCCCCHHHHHHHHGGG---------CTTHHH
T ss_pred HHHHHHHHHCCCCCCEEEEEEEEEEECCCCCCCCCHHHHHHHHHHCC-CCCCCCHHHHHHHHHHC---------CCCCCC
T ss_conf 98854444235577649999852565103568971599999986422-22379999999999880---------994143
Q ss_pred HHCCCEEEEEECCCEEEE
Q ss_conf 662985899852751567
Q gi|254781017|r 154 SIHGGLICYQMPKYSIEK 171 (324)
Q Consensus 154 ~~~Gg~i~~~~~~~~~~~ 171 (324)
+.+|+.-+.+.....+++
T Consensus 145 fl~~~~a~~~G~Ge~l~p 162 (163)
T d1oj4a1 145 FVRGHAAFAEGVGEILTP 162 (163)
T ss_dssp HHHCBCEEEETTTTEEEE
T ss_pred CCCCCCEEEEECCCEEEE
T ss_conf 205987899976977765
No 15
>d1ueka1 d.14.1.5 (A:1-148) 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase IspE {Thermus thermophilus [TaxId: 274]}
Probab=99.43 E-value=7.7e-12 Score=91.23 Aligned_cols=141 Identities=13% Similarity=0.107 Sum_probs=96.6
Q ss_pred EEECCEEEEEEC----CCEE-ECCCEEEEEEECCEEEEEEEECCCCEEEEEECCCCCCCCCCHHHCCCHHHHHHHHHHHH
Q ss_conf 997170499974----3533-08942898776772899999868984999953644446566120150899999999971
Q gi|254781017|r 9 CVSAPGSLVLMG----EHGV-LHGHAALVFAINKRVILYLTLRKDRLINIDSSLGQYCGSLDLAMFHPSFSFIIMAINHI 83 (324)
Q Consensus 9 ~~~aPGKv~L~G----Eh~v-~~G~~ai~~aI~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~ 83 (324)
+..||+||||+= -..+ ||.-..+.+.||.+..++++++++. +.+.. ..+..+-.++.+....+++
T Consensus 2 ~~~aPAKINL~L~V~~kr~dGyH~l~s~~~~i~l~D~i~i~~~~~~-~~~~~---------p~~~~Nlv~ka~~~l~~~~ 71 (148)
T d1ueka1 2 ERLAPAKVNLGLSVRFRREDGYHELHTLFAPFSLADRLVVEPVSSG-LHFQG---------PYGRENLAYRAASLYLEAA 71 (148)
T ss_dssp EEEEEEEEEEEEEEEEECTTSSEEEEEEEEEEEEEEEEEEEEESSC-EEEES---------TTGGGSHHHHHHHHHHHHT
T ss_pred CCCCCCEEEEEEEECCCCCCCCCEEEEEEEEEECCCCCEEECCCCC-CCCCC---------CCCCCCHHHHHHHHHHHHC
T ss_conf 5431303804576376278985503279999897651289714664-11256---------5443213333455667751
Q ss_pred CCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCEEEEE
Q ss_conf 87787389998268753548874024566556777640456666014557888877652146887544776629858998
Q gi|254781017|r 84 KPSCGFDLKVISQLDSQLGLGSSAAITVAITAALLTLQYHKEPSPDEILTTAHAIVLKVQGISSGIDLAASIHGGLICYQ 163 (324)
Q Consensus 84 ~~~~g~~i~i~s~iP~g~GLGSSaa~~va~~~al~~~~~~~~~~~~~i~~lA~~~E~~~~g~~sG~D~~a~~~Gg~i~~~ 163 (324)
....+++|+++.+||+++|||++||.+++++++++++. ..+. ++.++|..+ |.|+..+.+|+..+.+
T Consensus 72 ~~~~~~~I~i~K~IP~~aGLGGGSsnAAa~l~~l~~~~-~~~~---~l~~la~~i---------GsDVPffl~~~~~~~~ 138 (148)
T d1ueka1 72 GQPGGVRILLEKRIPEGAGLGGGSSDAAQVLLALQALY-PAEV---DLFALARTL---------GADVPFFLLGRGAEAR 138 (148)
T ss_dssp TCCCEEEEEEECCSCSSSSSCHHHHHHHHHHHHHHHHS-CSCC---CHHHHHHHH---------CTTHHHHHHCSEEEEE
T ss_pred CCCCEEEEEEEEEEEEEEECCCCCHHHHHHHHHHHHHH-HHHH---HHHHHHCCC---------CCCCHHHCCCCCEEEE
T ss_conf 88751899998237886311678304546999998861-3556---788862456---------9971242359878999
Q ss_pred ECCCEEEEE
Q ss_conf 527515673
Q gi|254781017|r 164 MPKYSIEKI 172 (324)
Q Consensus 164 ~~~~~~~~~ 172 (324)
.....+.++
T Consensus 139 G~Ge~l~pl 147 (148)
T d1ueka1 139 GVGERLKPL 147 (148)
T ss_dssp TTTTEEEEE
T ss_pred EECCEEEEC
T ss_conf 828286778
No 16
>d1fi4a1 d.14.1.5 (A:3-190) Mevalonate 5-diphosphate decarboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=98.82 E-value=8.5e-08 Score=65.64 Aligned_cols=148 Identities=18% Similarity=0.228 Sum_probs=91.1
Q ss_pred CCEEEEECCEEEEEEC---CCEE---ECCCEEEEEEECC---EEEEEEEECCCCE---EEEEECCCCCCCCCCHHHCCCH
Q ss_conf 8789997170499974---3533---0894289877677---2899999868984---9999536444465661201508
Q gi|254781017|r 5 LHKICVSAPGSLVLMG---EHGV---LHGHAALVFAINK---RVILYLTLRKDRL---INIDSSLGQYCGSLDLAMFHPS 72 (324)
Q Consensus 5 ~~ki~~~aPGKv~L~G---Eh~v---~~G~~ai~~aI~~---~~~~~~~~~~~~~---i~i~~~~~~~~~~~~~~~~~~~ 72 (324)
+.+++++||-.|-|+= -+-. +=-.+.|+++++. ++.++++..++.. +.++. .....+.......
T Consensus 1 ~~~~t~~apsNIALiKYWGK~d~~~~lP~n~SiS~TL~~~~~~T~t~v~~~~~~~~d~~~lnG----~~~~~~~~~~~~~ 76 (188)
T d1fi4a1 1 VYTASVTAPVNIATLKYWGKRDTKLNLPTNSSISVTLSQDDLRTLTSAATAPEFERDTLWLNG----EPHSIDNERTQNC 76 (188)
T ss_dssp CEEEEEEECCEEEEECCCCEEETTTTEESSCEEEEEBCTTTSCEEEEEEECTTCCSCBCTTTC----CBSSSSSSSHHHH
T ss_pred CEEEEEECCCCEEEEEECCCCCCCCCCCCCCEEEEEECCCCCEEEEEEEECCCCCCCCEEECC----EECCCCHHHHHHH
T ss_conf 957899753748788752645754577899827899358986788999867877654135788----2036402788999
Q ss_pred HHHHHH---HHHHHC------CCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 999999---999718------77873899982687535488740245665567776404566660145578888776521
Q gi|254781017|r 73 FSFIIM---AINHIK------PSCGFDLKVISQLDSQLGLGSSAAITVAITAALLTLQYHKEPSPDEILTTAHAIVLKVQ 143 (324)
Q Consensus 73 ~~~i~~---~l~~~~------~~~g~~i~i~s~iP~g~GLGSSaa~~va~~~al~~~~~~~~~~~~~i~~lA~~~E~~~~ 143 (324)
++.+.. .+.... ....++|....++|..+||+|||+..+|++.|+.++ ++.+++.+++..+|...
T Consensus 77 ~~~l~~~~~~~~~~~~~~p~~~~~~~~I~S~N~FP~aaGLASSAsg~aAl~~al~~~-~~~~~~~~~~S~lARlG----- 150 (188)
T d1fi4a1 77 LRDLRQLRKEMESKDASLPTLSQWKLHIVSENNFPTAAGLASSAAGFAALVSAIAKL-YQLPQSTSEISRIARKG----- 150 (188)
T ss_dssp HHHHHHHHHHHHTTCTTSCCGGGSCEEEEEEECCCTTSCCCHHHHHHHHHHHHHHHH-TTCCSCHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHH-HHCCCCHHHHHHHHHHH-----
T ss_conf 999999998873024357641244289996278822110888798899999999999-71778889999998764-----
Q ss_pred CCCCCHHHHHHHCCCEEEEEECC
Q ss_conf 46887544776629858998527
Q gi|254781017|r 144 GISSGIDLAASIHGGLICYQMPK 166 (324)
Q Consensus 144 g~~sG~D~~a~~~Gg~i~~~~~~ 166 (324)
.+| .+-++|||++.+...+
T Consensus 151 -SGS---AcRSi~Gg~v~W~~g~ 169 (188)
T d1fi4a1 151 -SGS---ACRSLFGGYVAWEMGK 169 (188)
T ss_dssp -HGG---GGGGGSSSEEEEECCS
T ss_pred -CCC---HHHHHCCCEEEECCCC
T ss_conf -544---0323208866802689
No 17
>d1h72c2 d.58.26.1 (C:168-300) Homoserine kinase {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=98.09 E-value=2.8e-05 Score=49.70 Aligned_cols=129 Identities=13% Similarity=0.089 Sum_probs=75.9
Q ss_pred CCCCCCEEECCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHH--HHHHHH-HH
Q ss_conf 477752676584179899998889988608234899999998403320788987304864456899999--899998-61
Q gi|254781017|r 174 FIFPIHLIYSGYKTPTAQVLKKISYIEIEYPEINEINQKIYALMGKLSQISCQALRNKNLKVLAQAMNR--QQGLLE-TL 250 (324)
Q Consensus 174 ~~~~l~l~~tg~~~~T~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~al~~~d~~~l~~lm~~--~~~~L~-~l 250 (324)
|..+++++..+...+|+++.+.+ .+..+ ..+...++- .......++..+|++.+++.+.. -|+--+ .
T Consensus 1 ~~l~~vl~~P~~~vsT~~aR~~L---P~~~~-~~dav~n~~-----~~~~lv~al~~~d~~l~~~~~~~D~l~Ep~r~~- 70 (133)
T d1h72c2 1 FKLDILIAIPNISINTKEAREIL---PKAVG-LKDLVNNVG-----KACGMVYALYNKDKSLFGRYMMSDKVIEPVRGK- 70 (133)
T ss_dssp SCCCEEEECCSSCCCHHHHHHTS---CSCCC-HHHHHHHHH-----HHHHHHHHHHTTCHHHHHHHHTTCCSSHHHHHT-
T ss_pred CEEEEEEEECCCCCCHHHHHHHC---HHHCC-HHHHHHHHH-----HHHHHHHHHHCCCHHHHHHHHHCCCCCCCEECC-
T ss_conf 96699999899988589999866---54397-999987042-----148899987406788999998468444710010-
Q ss_pred CCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCC
Q ss_conf 678779999999999719945997268997548999846653268999999999977978999414545644
Q gi|254781017|r 251 GVSDSKLSEIVWKLREQPHIMASKISGSGLGDCVIALGKGDLNSLPYQSVNCHMHAKGIDIVPITPSHSTSL 322 (324)
Q Consensus 251 gvs~~~l~~li~~~~~~~g~~~aklsGAG~GG~~i~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 322 (324)
..|+++++.+ +. ..|++|+-|||||+ ++++|++.+......+.++.+++ ..+....+.|..+
T Consensus 71 --l~P~~~~ik~-~l-~~ga~~~~lSGSGP--Tv~al~~~~~~~~~~~~l~~~~~----~~~~~~~~~G~~V 132 (133)
T d1h72c2 71 --LIPNYFKIKE-EV-KDKVYGITISGSGP--SIIAFPKEEFIDEVENILRDYYE----NTIRTEVGKGVEV 132 (133)
T ss_dssp --TSTTHHHHHH-HH-TTTEEEEEECTTSS--CEEEEECGGGHHHHHHHHHHHCS----CEEEECBCCCCEE
T ss_pred --CCCCHHHHHH-HH-HCCCEEEEEECCCC--CEEEEECHHHHHHHHHHHHHHHH----HCEEECCCCCCEE
T ss_conf --4973699999-85-35866999967997--07998373789999999999874----0789457997287
No 18
>d1ueka2 d.58.26.5 (A:149-268) 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase IspE {Thermus thermophilus [TaxId: 274]}
Probab=97.51 E-value=7.5e-05 Score=47.01 Aligned_cols=108 Identities=18% Similarity=0.218 Sum_probs=60.8
Q ss_pred CCCCCEEECCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 77752676584179899998889988608234899999998403320788987304864456899999899998616787
Q gi|254781017|r 175 IFPIHLIYSGYKTPTAQVLKKISYIEIEYPEINEINQKIYALMGKLSQISCQALRNKNLKVLAQAMNRQQGLLETLGVSD 254 (324)
Q Consensus 175 ~~~l~l~~tg~~~~T~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~al~~~d~~~l~~lm~~~~~~L~~lgvs~ 254 (324)
+.+++|++.+...+|+++-+.+........... +...+++..+++..+...+. .... ++ .
T Consensus 3 pl~~vlv~P~~~vST~~~y~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~Ndle--~~~~-~~---~ 62 (120)
T d1ueka2 3 PVPAVVFFPGLRVPTPLVYRAVRPEDFGPDLPV--------------EAILEALARGEEPPYWNSLE--GPAF-RL---F 62 (120)
T ss_dssp CEEEEEEECCCCCCHHHHHHTCCGGGCCCCCCH--------------HHHHHHHHHTCCCSCCBTTH--HHHH-HH---C
T ss_pred CCEEEEECCCCCCCHHHHHHHHCHHCCCCCCCH--------------HHHHHHHHHHCHHHHHCCHH--HHHH-HH---H
T ss_conf 975999899998657999987453204556787--------------99999898406998748649--9999-99---8
Q ss_pred HHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCC
Q ss_conf 799999999997199459972689975489998466532689999999999779
Q gi|254781017|r 255 SKLSEIVWKLREQPHIMASKISGSGLGDCVIALGKGDLNSLPYQSVNCHMHAKG 308 (324)
Q Consensus 255 ~~l~~li~~~~~~~g~~~aklsGAG~GG~~i~l~~~~~~~~~~~~~~~~~~~~g 308 (324)
|+++++.+.+.+ .|+.++.|||+|+ |++++++.+.++ +++.+.+.+.+
T Consensus 63 p~l~~~~~~l~~-~g~~~~~mSGSGs--t~F~l~~~~~~a---~~~~~~l~~~~ 110 (120)
T d1ueka2 63 PELKEVRGRMRA-LGLRGVLMSGSGS--AFFGLAEGPDHA---RRAAEALRAWG 110 (120)
T ss_dssp THHHHHHHHHHH-TTCEEEEECTTSS--CEEEECSSHHHH---HHHHHHHTTTS
T ss_pred HHHHHHHHHHHH-HHHHHEEECCCCC--EEEEEECCHHHH---HHHHHHHHHHC
T ss_conf 669999999997-2304256648887--489986999999---99999988768
No 19
>d1oj4a2 d.58.26.5 (A:164-283) 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase IspE {Escherichia coli [TaxId: 562]}
Probab=96.15 E-value=0.0048 Score=35.54 Aligned_cols=89 Identities=17% Similarity=0.151 Sum_probs=51.5
Q ss_pred CCCCCEEECCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 77752676584179899998889988608234899999998403320788987304864456899999899998616787
Q gi|254781017|r 175 IFPIHLIYSGYKTPTAQVLKKISYIEIEYPEINEINQKIYALMGKLSQISCQALRNKNLKVLAQAMNRQQGLLETLGVSD 254 (324)
Q Consensus 175 ~~~l~l~~tg~~~~T~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~al~~~d~~~l~~lm~~~~~~L~~lgvs~ 254 (324)
+..++|++.+...+|+++-+.....+..... .+ +........+|++....-+ .
T Consensus 4 ~~~~llv~P~~~vST~~if~~~~l~~~~~~~--~~------------~~~~~~~~~Ndle~~~~~~-------------~ 56 (120)
T d1oj4a2 4 EKWYLVAHPGVSIPTPVIFKDPELPRNTPKR--SI------------ETLLKCEFSNDCEVIARKR-------------F 56 (120)
T ss_dssp CCEEEEECCSCCCCHHHHHTCTTSCCCCCCC--CH------------HHHHHSCCCBTTHHHHHHH-------------C
T ss_pred CCEEEEECCCCCCCHHHHHHCCCCCCCCCCC--CH------------HHHHHHHCCCCHHHHHHHH-------------C
T ss_conf 8489998999995769998583757552415--69------------9998775049869999986-------------9
Q ss_pred HHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEEECCCCCHH
Q ss_conf 79999999999719945997268997548999846653268
Q gi|254781017|r 255 SKLSEIVWKLREQPHIMASKISGSGLGDCVIALGKGDLNSL 295 (324)
Q Consensus 255 ~~l~~li~~~~~~~g~~~aklsGAG~GG~~i~l~~~~~~~~ 295 (324)
|++.++.+.+... | +++|||+|+ |++++.+++.++.
T Consensus 57 P~I~~~~~~L~~~-g--~~~MSGSGs--tvF~~f~~~~~a~ 92 (120)
T d1oj4a2 57 REVDAVLSWLLEY-A--PSRLTGTGA--CVFAEFDTESEAR 92 (120)
T ss_dssp HHHHHHHHHHTTT-S--CEEECTTSS--CEEEEESSHHHHH
T ss_pred HHHHHHHHHHHHC-C--CCEECCCCC--EEEEEECCHHHHH
T ss_conf 8999999998656-4--544617877--7998858989999
No 20
>d1fi4a2 d.58.26.2 (A:191-393) Mevalonate 5-diphosphate decarboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=81.82 E-value=1.3 Score=20.18 Aligned_cols=119 Identities=8% Similarity=0.052 Sum_probs=60.7
Q ss_pred CCEEECCCCC-CHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHH--C---
Q ss_conf 5267658417-989999888998860823489999999840332078898730486445689999989999861--6---
Q gi|254781017|r 178 IHLIYSGYKT-PTAQVLKKISYIEIEYPEINEINQKIYALMGKLSQISCQALRNKNLKVLAQAMNRQQGLLETL--G--- 251 (324)
Q Consensus 178 l~l~~tg~~~-~T~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~al~~~d~~~l~~lm~~~~~~L~~l--g--- 251 (324)
+++++.+.+. ++.+.. +...+..|.+..+.+... .+...+..+|++++|++.|+++.-++-..+.++ .
T Consensus 6 IlVvs~~~K~vsSt~GM---~~tv~TSpl~~~r~~~~~---p~r~~~m~~AI~~rDF~~f~eite~ds~~mHA~~l~s~P 79 (203)
T d1fi4a2 6 VLVVSDIKKDVSSTQGM---QLTVATSELFKERIEHVV---PKRFEVMRKAIVEKDFATFAKETMMDSNSFHATCLDSFP 79 (203)
T ss_dssp EEEECCCSCCCCHHHHH---HHHHHHCSHHHHHHHTHH---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSS
T ss_pred EEEECCCCCCCCCHHHH---HHHHHHCHHHHHHHHHHH---HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 99965998778867999---878771955899999875---889999999999599999999999849999999854799
Q ss_pred ---CCCHHHH---HHHHHHHHC-CCCEEEECCCCCCCCEEEEEECCCCCHHHHHHHHHHH
Q ss_conf ---7877999---999999971-9945997268997548999846653268999999999
Q gi|254781017|r 252 ---VSDSKLS---EIVWKLREQ-PHIMASKISGSGLGDCVIALGKGDLNSLPYQSVNCHM 304 (324)
Q Consensus 252 ---vs~~~l~---~li~~~~~~-~g~~~aklsGAG~GG~~i~l~~~~~~~~~~~~~~~~~ 304 (324)
.-+|.-- ++|+..++. ++...+--.-||+-=+++++ .+..+.++..+...+
T Consensus 80 pi~Ylnd~S~~ii~~V~~~r~~~g~~~v~yT~DAGPNv~ll~~--~~~~~~v~~~l~~~f 137 (203)
T d1fi4a2 80 PIFYMNDTSKRIISWCHTINQFYGETIVAYTFDAGPNAVLYYL--AENESKLFAFIYKLF 137 (203)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHHHTSCCEEEEECSSSCEEEEEE--GGGHHHHHHHHHHHH
T ss_pred CEEEECCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCEEEEEC--CCCHHHHHHHHHHHC
T ss_conf 8587895189999999999986599658999779997799976--503999999999977
No 21
>d1lb2b_ a.60.3.1 (B:) C-terminal domain of RNA polymerase alpha subunit {Escherichia coli [TaxId: 562]}
Probab=60.14 E-value=2.8 Score=18.09 Aligned_cols=58 Identities=16% Similarity=0.215 Sum_probs=42.4
Q ss_pred CCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHCCCCEEEECC
Q ss_conf 32078898730486445689999989999861-67877999999999971994599726
Q gi|254781017|r 219 KLSQISCQALRNKNLKVLAQAMNRQQGLLETL-GVSDSKLSEIVWKLREQPHIMASKIS 276 (324)
Q Consensus 219 ~i~~~~~~al~~~d~~~l~~lm~~~~~~L~~l-gvs~~~l~~li~~~~~~~g~~~akls 276 (324)
.+..++..+|++.++..+++++..+.+.|.++ ++....++++.+.+.+.+-.+|.++.
T Consensus 12 ~lS~R~~N~L~~~gI~tvgdL~~~s~~dLl~~~n~G~KSl~EI~~~L~~~gL~lgm~~~ 70 (72)
T d1lb2b_ 12 ELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLASRGLSLGMRLE 70 (72)
T ss_dssp CCCHHHHHHHHHTTCCBHHHHHTCCHHHHHHSTTCCHHHHHHHHHHHHHTTCCSSCCCS
T ss_pred CCCHHHHHHHHHCCCCCHHHHHHCCHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 78899998874828947999986789999768897586899999999984987788799
No 22
>d1doqa_ a.60.3.1 (A:) C-terminal domain of RNA polymerase alpha subunit {Thermus thermophilus [TaxId: 274]}
Probab=33.52 E-value=11 Score=14.32 Aligned_cols=49 Identities=18% Similarity=0.291 Sum_probs=37.4
Q ss_pred CCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHC
Q ss_conf 32078898730486445689999989999861-67877999999999971
Q gi|254781017|r 219 KLSQISCQALRNKNLKVLAQAMNRQQGLLETL-GVSDSKLSEIVWKLREQ 267 (324)
Q Consensus 219 ~i~~~~~~al~~~d~~~l~~lm~~~~~~L~~l-gvs~~~l~~li~~~~~~ 267 (324)
.+..++..+|++.++..+++++..+...|.++ ++....++++.+.+.+.
T Consensus 14 ~LS~R~~N~L~~~gI~tv~dL~~~s~~dLl~i~n~G~ksl~EI~~~L~~~ 63 (69)
T d1doqa_ 14 GLSTRVLHSLKEEGIESVRALLALNLKDLKNIPGIGERSLEEIKEALEKK 63 (69)
T ss_dssp TCCHHHHHHHHHTTCCSHHHHHHSCHHHHTTSTTCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHCCCCCHHHHHHCCHHHHHHCCCCCHHHHHHHHHHHHHC
T ss_conf 89899999998959953999987889999748898787899999999986
No 23
>d1vkra_ c.44.2.1 (A:) PTS system mannitol-specific EIICBA component {Escherichia coli [TaxId: 562]}
Probab=24.20 E-value=10 Score=14.48 Aligned_cols=20 Identities=25% Similarity=0.297 Sum_probs=12.9
Q ss_pred CCCCCCCCHHHHHHHHHHHH
Q ss_conf 35488740245665567776
Q gi|254781017|r 100 QLGLGSSAAITVAITAALLT 119 (324)
Q Consensus 100 g~GLGSSaa~~va~~~al~~ 119 (324)
|+|+|||.-+...+-..|.+
T Consensus 11 g~G~GSS~m~~~~l~~~lk~ 30 (97)
T d1vkra_ 11 DAGMGSSAMGAGVLRKKIQD 30 (97)
T ss_dssp SSSSHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHH
T ss_conf 99967899999999999998
No 24
>d2pv7a1 a.100.1.12 (A:244-371) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}
Probab=24.05 E-value=16 Score=13.28 Aligned_cols=30 Identities=7% Similarity=0.107 Sum_probs=24.1
Q ss_pred CHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 078898730486445689999989999861
Q gi|254781017|r 221 SQISCQALRNKNLKVLAQAMNRQQGLLETL 250 (324)
Q Consensus 221 ~~~~~~al~~~d~~~l~~lm~~~~~~L~~l 250 (324)
..+..++++.+|.+.|.+.|.+++..+.+.
T Consensus 84 l~~l~~~i~~~D~~~l~~~~~~a~~~~~~~ 113 (128)
T d2pv7a1 84 YDEALTFFENNDRQGFIDAFHKVRDWFGDY 113 (128)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_conf 999999998399999999999999999876
No 25
>d1tdja2 d.58.18.2 (A:336-423) Allosteric threonine deaminase C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=23.19 E-value=17 Score=13.17 Aligned_cols=52 Identities=6% Similarity=0.047 Sum_probs=35.1
Q ss_pred EEEECCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCC
Q ss_conf 59972689975489998466532689999999999779789994145456445
Q gi|254781017|r 271 MASKISGSGLGDCVIALGKGDLNSLPYQSVNCHMHAKGIDIVPITPSHSTSLY 323 (324)
Q Consensus 271 ~~aklsGAG~GG~~i~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 323 (324)
+--|.+|+.-|-..+.+-.++. ....+.+.+.+.+.||...+++.++-.++|
T Consensus 32 F~YR~~~~~~a~VlvGi~~~~~-~~e~~~l~~~L~~~Gy~~~Dltdne~aK~H 83 (88)
T d1tdja2 32 FNYRFADAKNACIFVGVRLSRG-LEERKEILQMLNDGGYSVVDLSDDEMAKLH 83 (88)
T ss_dssp EEEECCCSSBCEEEEEEECSST-HHHHHHHHHHHTSSSCEEETTSSCHHHHHT
T ss_pred EEEECCCCCCEEEEEEEEECCC-CHHHHHHHHHHHHCCCCEEECCCCHHHHHH
T ss_conf 9987048987189999986686-115999999998779965788679999977
No 26
>d2hs5a1 a.4.5.6 (A:25-93) Putative transcriptional regulator RHA1_ro03477 {Rhodococcus sp. RHA1 [TaxId: 101510]}
Probab=22.11 E-value=14 Score=13.61 Aligned_cols=56 Identities=16% Similarity=0.239 Sum_probs=33.7
Q ss_pred CCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEECCCCC
Q ss_conf 207889873048644568999998999986167877999999999971994599726899
Q gi|254781017|r 220 LSQISCQALRNKNLKVLAQAMNRQQGLLETLGVSDSKLSEIVWKLREQPHIMASKISGSG 279 (324)
Q Consensus 220 i~~~~~~al~~~d~~~l~~lm~~~~~~L~~lgvs~~~l~~li~~~~~~~g~~~aklsGAG 279 (324)
+.+...+.+..+++. -|+.+.+ +++-+.+|+|-..+.+-++.+... |.+ ....|.|
T Consensus 7 i~~~l~~~I~~g~~~-~G~~l~~-~~La~~~~vSr~tvr~Al~~L~~~-Gli-~~~~~~G 62 (69)
T d2hs5a1 7 VAGILRDAIIDGTFR-PGARLSE-PDICAALDVSRNTVREAFQILIED-RLV-AHELNRG 62 (69)
T ss_dssp HHHHHHHHHHHTSSC-TTCEECH-HHHHHHHTCCHHHHHHHHHHHHHT-TSE-EEETTTE
T ss_pred HHHHHHHHHHCCCCC-CCCCCCH-HHHHHHHCCCHHHHHHHHHHHHHC-CCE-EEECCCE
T ss_conf 999999999829999-9296699-999999897989999999999988-968-9975977
Done!