HHsearch alignment for GI: 254781018 and conserved domain: COG1685
>COG1685 Archaeal shikimate kinase [Amino acid transport and metabolism / Coenzyme metabolism].
Probab=99.65 E-value=1.3e-12 Score=98.15 Aligned_cols=266 Identities=15% Similarity=0.117 Sum_probs=159.4
Q ss_pred EEEECCCEEEEECCCEEECCCEEEEEEECCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf 89985817999744544079548998766727999998489829999557666753210012333343321111122103
Q gi|254781018|r 11 AHSIAPAKVILSGEYSSLYGASALAVAITFYLRALLTTIEPSLIRIINSQTIEYSFEACRLLGHQIDQRHRDFIAKKIPI 90 (337)
Q Consensus 11 ~~~~APGKi~L~GEh~v~~G~~ai~~aI~~~~~v~i~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (337)
T Consensus 3 ~~a~A~g~~TIiNAiat---G~G~AfgidL~v~a~v~~~~~~~~~~~~~~--------------------------d~-- 51 (278)
T COG1685 3 GRARAYGGGTIINAIAT---GKGSAFGIDLKVEAEVRLSDEGKVRGEPEG--------------------------DT-- 51 (278)
T ss_pred CEEEECCCEEEEEEHHC---CCCCEEEECCEEEEEEEECCCCCCCCCCCC--------------------------CH--
T ss_conf 43884276067530124---766256524458999998576531367778--------------------------74--
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 34777888999998751156678876999980554103898530378999999999818775402589999998641157
Q gi|254781018|r 91 TSVLTHPNDLILYIFNRHLPHISCGISLDLHSTIPIGSGFGSSSAIISALSLALSSITHQPFCNKEKLIAETGYIERLQH 170 (337)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~g~~i~i~s~iP~~~GLGSSaA~~va~~~al~~~~~~~~~~~~~~~~~a~~~e~~~~ 170 (337)
T Consensus 52 ----~li~~~~~~v~e~--~g~~~~~~v~v~SeiP~~~GLkSSSA~~nAlv~A~~~~~g~~~~~~-~i~~l~a~~S~~aG 124 (278)
T COG1685 52 ----RLIERCVERVREK--YGIPLGVEVEVESEIPVGSGLKSSSAASNALVKAVLKALGEEIDDF-EILRLGARASKEAG 124 (278)
T ss_pred ----HHHHHHHHHHHHH--CCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHHCC
T ss_conf ----7999999999987--2988655999825787666742458999999999999718988814-88887779887459
Q ss_pred C--CCCCHHHHHHHHCCCEEEECCCCCCCCC--CCCCEEEEECCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf 7--8773457876532630240278520014--78843999749714537999999997641206899987654899999
Q gi|254781018|r 171 G--KTGIIDSTTIVMGGIIYINPPQIIKNET--LVGEWWAINTGMPESSTGECVSFVEQHFSQSSIWSEFNAVTNEMMEN 246 (337)
Q Consensus 171 ~--~~sg~D~~~~~~gg~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~st~~~~~~~~~~~~~~~~~~~~~~i~~~~~~a 246 (337)
T Consensus 125 vSvTGA~DDa~AS~~GG~~iTDN~~m~Ilrr~~~~~~~vlI~~p~~k~~~~~v---------dv~~~r~~a~~~e~A~~l 195 (278)
T COG1685 125 VSVTGAFDDACASYLGGIVITDNRKMRILRRLDLPELTVLILAPGEKRLSANV---------DVNRLRLIAPVVEEAFRL 195 (278)
T ss_pred CEEECCCHHHHHHHHCCEEEECCHHHEEHHCCCCCCCEEEEEECCCCCCCCCC---------CHHHHHHHHHHHHHHHHH
T ss_conf 44741406889997588688616111000003467740899816876525547---------878987743899999999
Q ss_pred HHCCCCHHHHHHHHHHHHHH-HHCCCCCHHHHHHHHHHHHCCC-EEEECCCCCCCCCEEEEEEEECCCHHHHHHHCC-CE
Q ss_conf 98387216899999959999-9718997799999999985798-089507886788508999985799799997459-86
Q gi|254781018|r 247 IQKKDAEKTYKSVRVNQSLL-ESIGVVPETVGKFIRCIENNGG-SAKIAGAGSIRGEKAGLVLVGGYNPEKLSSLYG-YT 323 (337)
Q Consensus 247 l~~~d~~~l~~~~~~~~~ll-~~l~vs~~~l~~l~~~~~~~g~-~ak~sGAG~~~Gg~~~~~l~~~~~~~~~~~~~~-~~ 323 (337)
T Consensus 196 A~~G~~---~~Am~lNG~~y~~aLG~~~e~----~~~ale~GA~~aglSGtGP-----a~~Al~~~~-~~v~ea~~~~G~ 262 (278)
T COG1685 196 ALKGEY---FKAMVLNGILYCSALGYDLEP----ALKALEAGAAAAGLSGTGP-----AYFALTEDP-EEVAEAWSKIGD 262 (278)
T ss_pred HHCCCH---HHHHHHHHHHHHHHHCCCHHH----HHHHHHCCCCEECCCCCCC-----CEEEEECCC-HHHHHHHHHCCE
T ss_conf 853528---888887679989870898289----9999863540643578897-----169995493-789999986786
Q ss_pred EEEEEECCCCEEE
Q ss_conf 9999987997092
Q gi|254781018|r 324 CYKIKEDKNGTML 336 (337)
Q Consensus 324 ~~~~~~~~~G~~i 336 (337)
T Consensus 263 V~~t~~~~~~~~~ 275 (278)
T COG1685 263 VIETRNVGERARD 275 (278)
T ss_pred EEEEECCCCCCEE
T ss_conf 9998048987401