HHsearch alignment for GI: 254781018 and conserved domain: COG1947
>COG1947 IspE 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase [Lipid metabolism].
Probab=99.76 E-value=5.7e-16 Score=119.38 Aligned_cols=237 Identities=16% Similarity=0.168 Sum_probs=149.4
Q ss_pred EEEECCCEEEEE----CCCEE-ECCCEEEEEEECCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 899858179997----44544-0795489987667279999984898299995576667532100123333433211111
Q gi|254781018|r 11 AHSIAPAKVILS----GEYSS-LYGASALAVAITFYLRALLTTIEPSLIRIINSQTIEYSFEACRLLGHQIDQRHRDFIA 85 (337)
Q Consensus 11 ~~~~APGKi~L~----GEh~v-~~G~~ai~~aI~~~~~v~i~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (337)
T Consensus 4 ~~~~apAKiNL~L~V~gkr~DGYHel~sl~~~id~~D~l~i~~~~~~~~~~~~~~~~-------~l------p~~----- 65 (289)
T COG1947 4 TKFPAPAKINLFLHVTGKRADGYHELETLFQFIDLGDELTIRPRDDDGFIVLGTFAD-------GL------PTD----- 65 (289)
T ss_pred EEEECCCEEEEEEEECCCCCCCCEEEEEEEEEECCCCEEEEEECCCCCCEEECCCCC-------CC------CCC-----
T ss_conf 687215448888885355899843458999994148789999877887269667777-------88------774-----
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf 22103347778889999987511566788769999805541038985303789999999998187754025899999986
Q gi|254781018|r 86 KKIPITSVLTHPNDLILYIFNRHLPHISCGISLDLHSTIPIGSGFGSSSAIISALSLALSSITHQPFCNKEKLIAETGYI 165 (337)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~i~s~iP~~~GLGSSaA~~va~~~al~~~~~~~~~~~~~~~~~a~~~ 165 (337)
T Consensus 66 -~NLv~r--------Aa~ll~~~~~-~~~~v~I~l~K~IPv~aGLGGGSSdAAa~L~~Ln~lw~~~ls~~-eL~~Lg~~L 134 (289)
T COG1947 66 -ENLVYR--------AAELLRKRTG-IAGGVSIHLDKNIPVGAGLGGGSSDAAAVLVALNELWGLGLSLE-ELAELGLRL 134 (289)
T ss_pred -CHHHHH--------HHHHHHHHHC-CCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHH-HHHHHHHHH
T ss_conf -319999--------9999999868-99982799983686557676645789999999999867999999-999999986
Q ss_pred HHCCCCCCCCHHHHHHHHCCCEEEECCCC--CCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 41157787734578765326302402785--2001478843999749714537999999997641206899987654899
Q gi|254781018|r 166 ERLQHGKTGIIDSTTIVMGGIIYINPPQI--IKNETLVGEWWAINTGMPESSTGECVSFVEQHFSQSSIWSEFNAVTNEM 243 (337)
Q Consensus 166 e~~~~~~~sg~D~~~~~~gg~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~st~~~~~~~~~~~~~~~~~~~~~~i~~~~ 243 (337)
T Consensus 135 ---------GaDVPffl~g~tA~a~G~GE~l~~~~~~~~~~~vl~~P~v~vsT~~vy~-~~~~~~~~~~~-------~~~ 197 (289)
T COG1947 135 ---------GADVPFFLSGGTAFAEGRGEKLEPLEDPPEKWYVLAKPGVGVSTKEVYK-DPELTRNTPKS-------EPL 197 (289)
T ss_pred ---------CCCCCEEEECCCEEEEECCCEEEECCCCCCCEEEEEECCCCCCHHHHHC-CCCCCCCCCCC-------HHH
T ss_conf ---------8986714318856988736351477778875299995898998799970-86756466772-------245
Q ss_pred HHHHHCCCCHHHHHHHH-HHHH-HHHHCCCCCHHHHHHHHHHHHCCC-EEEECCCCC
Q ss_conf 99998387216899999-9599-999718997799999999985798-089507886
Q gi|254781018|r 244 MENIQKKDAEKTYKSVR-VNQS-LLESIGVVPETVGKFIRCIENNGG-SAKIAGAGS 297 (337)
Q Consensus 244 ~~al~~~d~~~l~~~~~-~~~~-ll~~l~vs~~~l~~l~~~~~~~g~-~ak~sGAG~ 297 (337)
T Consensus 198 ~~~~~~~~~~~~~~~~~NdLe~~~~~~----~p~v~~~~~~l~~~ga~~~~mSGSGs 250 (289)
T COG1947 198 IAALSLENLKQIAPFLINDLEKVALRL----YPEVKEALSELLEYGALPARMSGSGS 250 (289)
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHH----CHHHHHHHHHHHHCCCCCCEEECCCC
T ss_conf 587865527764102036457889885----86899999997641354436824787