HHsearch alignment for GI: 254781018 and conserved domain: COG1947

>COG1947 IspE 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase [Lipid metabolism].
Probab=99.76  E-value=5.7e-16  Score=119.38  Aligned_cols=237  Identities=16%  Similarity=0.168  Sum_probs=149.4

Q ss_pred             EEEECCCEEEEE----CCCEE-ECCCEEEEEEECCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             899858179997----44544-0795489987667279999984898299995576667532100123333433211111
Q gi|254781018|r   11 AHSIAPAKVILS----GEYSS-LYGASALAVAITFYLRALLTTIEPSLIRIINSQTIEYSFEACRLLGHQIDQRHRDFIA   85 (337)
Q Consensus        11 ~~~~APGKi~L~----GEh~v-~~G~~ai~~aI~~~~~v~i~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (337)
T Consensus         4 ~~~~apAKiNL~L~V~gkr~DGYHel~sl~~~id~~D~l~i~~~~~~~~~~~~~~~~-------~l------p~~-----   65 (289)
T COG1947           4 TKFPAPAKINLFLHVTGKRADGYHELETLFQFIDLGDELTIRPRDDDGFIVLGTFAD-------GL------PTD-----   65 (289)
T ss_pred             EEEECCCEEEEEEEECCCCCCCCEEEEEEEEEECCCCEEEEEECCCCCCEEECCCCC-------CC------CCC-----
T ss_conf             687215448888885355899843458999994148789999877887269667777-------88------774-----


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf             22103347778889999987511566788769999805541038985303789999999998187754025899999986
Q gi|254781018|r   86 KKIPITSVLTHPNDLILYIFNRHLPHISCGISLDLHSTIPIGSGFGSSSAIISALSLALSSITHQPFCNKEKLIAETGYI  165 (337)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~i~s~iP~~~GLGSSaA~~va~~~al~~~~~~~~~~~~~~~~~a~~~  165 (337)
T Consensus        66 -~NLv~r--------Aa~ll~~~~~-~~~~v~I~l~K~IPv~aGLGGGSSdAAa~L~~Ln~lw~~~ls~~-eL~~Lg~~L  134 (289)
T COG1947          66 -ENLVYR--------AAELLRKRTG-IAGGVSIHLDKNIPVGAGLGGGSSDAAAVLVALNELWGLGLSLE-ELAELGLRL  134 (289)
T ss_pred             -CHHHHH--------HHHHHHHHHC-CCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHH-HHHHHHHHH
T ss_conf             -319999--------9999999868-99982799983686557676645789999999999867999999-999999986


Q ss_pred             HHCCCCCCCCHHHHHHHHCCCEEEECCCC--CCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf             41157787734578765326302402785--2001478843999749714537999999997641206899987654899
Q gi|254781018|r  166 ERLQHGKTGIIDSTTIVMGGIIYINPPQI--IKNETLVGEWWAINTGMPESSTGECVSFVEQHFSQSSIWSEFNAVTNEM  243 (337)
Q Consensus       166 e~~~~~~~sg~D~~~~~~gg~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~st~~~~~~~~~~~~~~~~~~~~~~i~~~~  243 (337)
T Consensus       135 ---------GaDVPffl~g~tA~a~G~GE~l~~~~~~~~~~~vl~~P~v~vsT~~vy~-~~~~~~~~~~~-------~~~  197 (289)
T COG1947         135 ---------GADVPFFLSGGTAFAEGRGEKLEPLEDPPEKWYVLAKPGVGVSTKEVYK-DPELTRNTPKS-------EPL  197 (289)
T ss_pred             ---------CCCCCEEEECCCEEEEECCCEEEECCCCCCCEEEEEECCCCCCHHHHHC-CCCCCCCCCCC-------HHH
T ss_conf             ---------8986714318856988736351477778875299995898998799970-86756466772-------245


Q ss_pred             HHHHHCCCCHHHHHHHH-HHHH-HHHHCCCCCHHHHHHHHHHHHCCC-EEEECCCCC
Q ss_conf             99998387216899999-9599-999718997799999999985798-089507886
Q gi|254781018|r  244 MENIQKKDAEKTYKSVR-VNQS-LLESIGVVPETVGKFIRCIENNGG-SAKIAGAGS  297 (337)
Q Consensus       244 ~~al~~~d~~~l~~~~~-~~~~-ll~~l~vs~~~l~~l~~~~~~~g~-~ak~sGAG~  297 (337)
T Consensus       198 ~~~~~~~~~~~~~~~~~NdLe~~~~~~----~p~v~~~~~~l~~~ga~~~~mSGSGs  250 (289)
T COG1947         198 IAALSLENLKQIAPFLINDLEKVALRL----YPEVKEALSELLEYGALPARMSGSGS  250 (289)
T ss_pred             HHHHHHHHHHHHHHHCCCCHHHHHHHH----CHHHHHHHHHHHHCCCCCCEEECCCC
T ss_conf             587865527764102036457889885----86899999997641354436824787