HHsearch alignment for GI: 254781018 and conserved domain: PRK00343
>PRK00343 ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional.
Probab=99.80 E-value=5.1e-17 Score=126.00 Aligned_cols=254 Identities=16% Similarity=0.178 Sum_probs=155.2
Q ss_pred EEEECCCEEEEE----CCCEE-ECCCEEEEEEECCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 899858179997----44544-0795489987667279999984898299995576667532100123333433211111
Q gi|254781018|r 11 AHSIAPAKVILS----GEYSS-LYGASALAVAITFYLRALLTTIEPSLIRIINSQTIEYSFEACRLLGHQIDQRHRDFIA 85 (337)
Q Consensus 11 ~~~~APGKi~L~----GEh~v-~~G~~ai~~aI~~~~~v~i~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (337)
T Consensus 3 ~~~~aPAKINL~L~V~~kr~DGyH~i~Sl~~~idl~D~i~i~~~~~~~i~~~~~~~-~-------i~------------~ 62 (279)
T PRK00343 3 LDWPAPAKLNLFLHITGRRADGYHELQTLFQFLDYGDTLHFEPRDDGQIRLLTEIP-G-------VP------------E 62 (279)
T ss_pred CCCCCCEEEEECCCCCCCCCCCCCEEEEEEEECCCCCEEEEEECCCCCEEEECCCC-C-------CC------------C
T ss_conf 66365002730322387089998625789998278839999998899689946877-7-------98------------6
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf 22103347778889999987511566788769999805541038985303789999999998187754025899999986
Q gi|254781018|r 86 KKIPITSVLTHPNDLILYIFNRHLPHISCGISLDLHSTIPIGSGFGSSSAIISALSLALSSITHQPFCNKEKLIAETGYI 165 (337)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~i~s~iP~~~GLGSSaA~~va~~~al~~~~~~~~~~~~~~~~~a~~~ 165 (337)
T Consensus 63 ~~Nlv~ka~--------~~l~~-~~~~~~~~~I~l~KnIPv~AGLGGGSSnAAa~L~~Ln~l~~l~ls~-~~l~~ia~~l 132 (279)
T PRK00343 63 EDNLIVRAA--------RLLQK-ATGTPLGADISLDKRLPMGGGLGGGSSDAATTLVALNRLWQLGLSR-DELAALGLKL 132 (279)
T ss_pred CCCHHHHHH--------HHHHH-HHCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCH-HHHHHHHHHC
T ss_conf 475999999--------99999-8699997499999658763567888712899999999974667899-9999998751
Q ss_pred HHCCCCCCCCHHHHHHHHCCCEEEECC-CCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 411577877345787653263024027-8520014788439997497145379999999976412068999876548999
Q gi|254781018|r 166 ERLQHGKTGIIDSTTIVMGGIIYINPP-QIIKNETLVGEWWAINTGMPESSTGECVSFVEQHFSQSSIWSEFNAVTNEMM 244 (337)
Q Consensus 166 e~~~~~~~sg~D~~~~~~gg~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~st~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 244 (337)
T Consensus 133 ---------GaDVPffl~~~~a~~~G~Ge~l~~~~~~~~~~llv~P~~~vST~~vf~~~~l~~~--~~~~~~~~----~~ 197 (279)
T PRK00343 133 ---------GADVPVFVRGHAAFAEGVGEKLTPVELPEKWYLVVKPGVHVSTAEIFSDPELTRD--TPKRTIAD----FL 197 (279)
T ss_pred ---------CCCEEEEECCCCEEEEECCCEEEECCCCCCEEEEECCCCCCCHHHHHHCCCCCCC--CCCCCHHH----HH
T ss_conf ---------8977778608768998068687775678747999879999561999838245547--73006999----98
Q ss_pred HHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCEEEECCCCCCCCCEEEEEEEECC-CHHHHHHH--CC
Q ss_conf 9998387216899999959999971899779999999998579808950788678850899998579-97999974--59
Q gi|254781018|r 245 ENIQKKDAEKTYKSVRVNQSLLESIGVVPETVGKFIRCIENNGGSAKIAGAGSIRGEKAGLVLVGGY-NPEKLSSL--YG 321 (337)
Q Consensus 245 ~al~~~d~~~l~~~~~~~~~ll~~l~vs~~~l~~l~~~~~~~g~~ak~sGAG~~~Gg~~~~~l~~~~-~~~~~~~~--~~ 321 (337)
T Consensus 198 ~~~~~NDLe~~a---------~~----~~PeI~~~~~~L~~~~~-~~MSGSGSt-----~Fglf~~~~~A~~a~~~l~~~ 258 (279)
T PRK00343 198 AGPGRNDCEPVV---------RK----RYPEVAQALSWLLEYAP-ARMTGTGAC-----VFAEFDTEAEAEAVLAQLPEG 258 (279)
T ss_pred HCHHCCCHHHHH---------HH----HCHHHHHHHHHHHHCCC-CEEECCCCE-----EEEEECCHHHHHHHHHHCCCC
T ss_conf 431218589999---------88----69899999999860288-746542225-----889979999999999864744
Q ss_pred CEEEEEE
Q ss_conf 8699999
Q gi|254781018|r 322 YTCYKIK 328 (337)
Q Consensus 322 ~~~~~~~ 328 (337)
T Consensus 259 ~~~f~~k 265 (279)
T PRK00343 259 WNGFVAK 265 (279)
T ss_pred CCEEEEC
T ss_conf 8789947