HHsearch alignment for GI: 254781018 and conserved domain: PRK00650
>PRK00650 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional.
Probab=99.76 E-value=2.9e-16 Score=121.27 Aligned_cols=222 Identities=19% Similarity=0.218 Sum_probs=149.6
Q ss_pred EEECCCEEEEE----CCCEE-ECCCEEEEEEECCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99858179997----44544-07954899876672799999848982999955766675321001233334332111112
Q gi|254781018|r 12 HSIAPAKVILS----GEYSS-LYGASALAVAITFYLRALLTTIEPSLIRIINSQTIEYSFEACRLLGHQIDQRHRDFIAK 86 (337)
Q Consensus 12 ~~~APGKi~L~----GEh~v-~~G~~ai~~aI~~~~~v~i~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (337)
T Consensus 2 ~~~aPAKINL~L~V~~kr~DGYH~l~Sl~~~idl~D~i~i~~~~~~~~~~~~~~~~--------------~-------~~ 60 (288)
T PRK00650 2 HFFSPAKLNLFLQLLGKREDGFHEIVTRYQAIDFGDQLSLSISSRDSLQVINLCEL--------------E-------TP 60 (288)
T ss_pred CEECCEEEECCCCCCCCCCCCCCEEEEEEEEECCCCEEEEEECCCCCEEEECCCCC--------------C-------CC
T ss_conf 56077107325045887999988157999996789899999889996898389878--------------9-------94
Q ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf 21033477788899999875115667887699998055410389853037899999999981877540258999999864
Q gi|254781018|r 87 KIPITSVLTHPNDLILYIFNRHLPHISCGISLDLHSTIPIGSGFGSSSAIISALSLALSSITHQPFCNKEKLIAETGYIE 166 (337)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~i~s~iP~~~GLGSSaA~~va~~~al~~~~~~~~~~~~~~~~~a~~~e 166 (337)
T Consensus 61 ~Nli~kA--------~~~l-~~~~~~~~~~~I~l~KnIPvgAGLGGGSSnAAavL~~Ln~l~~l~l~~-~~L~~ia~~l- 129 (288)
T PRK00650 61 QNSIWKS--------VALF-RDYTGITTPVSWRVVKQIPIGAGLAGGSSNAATALFALNQHFQTGLSD-EELRSLAEKI- 129 (288)
T ss_pred HHHHHHH--------HHHH-HHHHCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCH-HHHHHHHHHC-
T ss_conf 5699999--------9999-997499987379999579765567610378999999999985589899-9999999872-
Q ss_pred HCCCCCCCCHHHHHHHHCCCEEEECCCC--CCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 1157787734578765326302402785--20014788439997497145379999999976412068999876548999
Q gi|254781018|r 167 RLQHGKTGIIDSTTIVMGGIIYINPPQI--IKNETLVGEWWAINTGMPESSTGECVSFVEQHFSQSSIWSEFNAVTNEMM 244 (337)
Q Consensus 167 ~~~~~~~sg~D~~~~~~gg~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~st~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 244 (337)
T Consensus 130 --------GADVPffl~~~~a~~~G~GE~i~~l~~~~~~~~vLv~p~~~vsT~~vf~~~~~~--~~~~~~~--------l 191 (288)
T PRK00650 130 --------GMDTPFFFSSGSALGVGRGEKILALEESVSDRYVLYFSDQGVLTSDAFAYVQPS--DCSSRKN--------L 191 (288)
T ss_pred --------CCCCCEEECCCCEEEEECCCEEEECCCCCCCEEEEECCCCCCCCHHHHHHCCCC--CCCHHHH--------H
T ss_conf --------998140753875899937967778876776519999199897766987504910--0663666--------6
Q ss_pred HHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCC----EEEECCCCC
Q ss_conf 99983872168999999599999718997799999999985798----089507886
Q gi|254781018|r 245 ENIQKKDAEKTYKSVRVNQSLLESIGVVPETVGKFIRCIENNGG----SAKIAGAGS 297 (337)
Q Consensus 245 ~al~~~d~~~l~~~~~~~~~ll~~l~vs~~~l~~l~~~~~~~g~----~ak~sGAG~ 297 (337)
T Consensus 192 ~-~~~NDLE~~a~~-------------~~P~i~~ik~~L~~l~a~~~~~~rMSGSGs 234 (288)
T PRK00650 192 E-YTQNDLEKPVFR-------------LRLDLKEKKHWLESLWSPFPVHVGLTGSGA 234 (288)
T ss_pred H-HCCCCCHHHHHH-------------HCHHHHHHHHHHHHCCCCCCCEEEEECCCC
T ss_conf 5-458978899998-------------597999999999964698776588873130