HHsearch alignment for GI: 254781018 and conserved domain: PRK00650

>PRK00650 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional.
Probab=99.76  E-value=2.9e-16  Score=121.27  Aligned_cols=222  Identities=19%  Similarity=0.218  Sum_probs=149.6

Q ss_pred             EEECCCEEEEE----CCCEE-ECCCEEEEEEECCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             99858179997----44544-07954899876672799999848982999955766675321001233334332111112
Q gi|254781018|r   12 HSIAPAKVILS----GEYSS-LYGASALAVAITFYLRALLTTIEPSLIRIINSQTIEYSFEACRLLGHQIDQRHRDFIAK   86 (337)
Q Consensus        12 ~~~APGKi~L~----GEh~v-~~G~~ai~~aI~~~~~v~i~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (337)
T Consensus         2 ~~~aPAKINL~L~V~~kr~DGYH~l~Sl~~~idl~D~i~i~~~~~~~~~~~~~~~~--------------~-------~~   60 (288)
T PRK00650          2 HFFSPAKLNLFLQLLGKREDGFHEIVTRYQAIDFGDQLSLSISSRDSLQVINLCEL--------------E-------TP   60 (288)
T ss_pred             CEECCEEEECCCCCCCCCCCCCCEEEEEEEEECCCCEEEEEECCCCCEEEECCCCC--------------C-------CC
T ss_conf             56077107325045887999988157999996789899999889996898389878--------------9-------94


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf             21033477788899999875115667887699998055410389853037899999999981877540258999999864
Q gi|254781018|r   87 KIPITSVLTHPNDLILYIFNRHLPHISCGISLDLHSTIPIGSGFGSSSAIISALSLALSSITHQPFCNKEKLIAETGYIE  166 (337)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~i~s~iP~~~GLGSSaA~~va~~~al~~~~~~~~~~~~~~~~~a~~~e  166 (337)
T Consensus        61 ~Nli~kA--------~~~l-~~~~~~~~~~~I~l~KnIPvgAGLGGGSSnAAavL~~Ln~l~~l~l~~-~~L~~ia~~l-  129 (288)
T PRK00650         61 QNSIWKS--------VALF-RDYTGITTPVSWRVVKQIPIGAGLAGGSSNAATALFALNQHFQTGLSD-EELRSLAEKI-  129 (288)
T ss_pred             HHHHHHH--------HHHH-HHHHCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCH-HHHHHHHHHC-
T ss_conf             5699999--------9999-997499987379999579765567610378999999999985589899-9999999872-


Q ss_pred             HCCCCCCCCHHHHHHHHCCCEEEECCCC--CCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf             1157787734578765326302402785--20014788439997497145379999999976412068999876548999
Q gi|254781018|r  167 RLQHGKTGIIDSTTIVMGGIIYINPPQI--IKNETLVGEWWAINTGMPESSTGECVSFVEQHFSQSSIWSEFNAVTNEMM  244 (337)
Q Consensus       167 ~~~~~~~sg~D~~~~~~gg~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~st~~~~~~~~~~~~~~~~~~~~~~i~~~~~  244 (337)
T Consensus       130 --------GADVPffl~~~~a~~~G~GE~i~~l~~~~~~~~vLv~p~~~vsT~~vf~~~~~~--~~~~~~~--------l  191 (288)
T PRK00650        130 --------GMDTPFFFSSGSALGVGRGEKILALEESVSDRYVLYFSDQGVLTSDAFAYVQPS--DCSSRKN--------L  191 (288)
T ss_pred             --------CCCCCEEECCCCEEEEECCCEEEECCCCCCCEEEEECCCCCCCCHHHHHHCCCC--CCCHHHH--------H
T ss_conf             --------998140753875899937967778876776519999199897766987504910--0663666--------6


Q ss_pred             HHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCC----EEEECCCCC
Q ss_conf             99983872168999999599999718997799999999985798----089507886
Q gi|254781018|r  245 ENIQKKDAEKTYKSVRVNQSLLESIGVVPETVGKFIRCIENNGG----SAKIAGAGS  297 (337)
Q Consensus       245 ~al~~~d~~~l~~~~~~~~~ll~~l~vs~~~l~~l~~~~~~~g~----~ak~sGAG~  297 (337)
T Consensus       192 ~-~~~NDLE~~a~~-------------~~P~i~~ik~~L~~l~a~~~~~~rMSGSGs  234 (288)
T PRK00650        192 E-YTQNDLEKPVFR-------------LRLDLKEKKHWLESLWSPFPVHVGLTGSGA  234 (288)
T ss_pred             H-HCCCCCHHHHHH-------------HCHHHHHHHHHHHHCCCCCCCEEEEECCCC
T ss_conf             5-458978899998-------------597999999999964698776588873130