HHsearch alignment for GI: 254781018 and conserved domain: PRK02534

>PRK02534 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional.
Probab=99.88  E-value=3.3e-19  Score=139.80  Aligned_cols=278  Identities=17%  Similarity=0.194  Sum_probs=171.6

Q ss_pred             CEEEECCCEEEEE----CCCEE-ECCCEEEEEEECCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             0899858179997----44544-079548998766727999998489829999557666753210012333343321111
Q gi|254781018|r   10 HAHSIAPAKVILS----GEYSS-LYGASALAVAITFYLRALLTTIEPSLIRIINSQTIEYSFEACRLLGHQIDQRHRDFI   84 (337)
Q Consensus        10 ~~~~~APGKi~L~----GEh~v-~~G~~ai~~aI~~~~~v~i~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (337)
T Consensus         3 ~~~l~apAKINL~L~V~~kr~dGyH~l~s~~~~i~l~D~i~i~~~~~~~i~~~~~~~--------~~---~~~-------   64 (308)
T PRK02534          3 SYTLIAPAKINLHLEILGDRPDGFHELAMVMQSIDLADRLEFRNNGDGTIKLRCDHP--------DL---STD-------   64 (308)
T ss_pred             EEEEEECEEEECCEECCCCCCCCCCEEEEEEEEECCCCEEEEEECCCCCEEEEECCC--------CC---CCC-------
T ss_conf             378980436810430188799998504789998168839999998999889986887--------68---889-------


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf             12210334777888999998751156678876999980554103898530378999999999818775402589999998
Q gi|254781018|r   85 AKKIPITSVLTHPNDLILYIFNRHLPHISCGISLDLHSTIPIGSGFGSSSAIISALSLALSSITHQPFCNKEKLIAETGY  164 (337)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~i~s~iP~~~GLGSSaA~~va~~~al~~~~~~~~~~~~~~~~~a~~  164 (337)
T Consensus        65 -~~Nlv~k--------a~~~l~~~~~~~~~gv~I~l~KnIPv~aGLGGGSsdAAa~L~~Ln~l~~~~ls~~-~L~~ia~~  134 (308)
T PRK02534         65 -DDNLIYR--------AAQLLRKRFPFAELGVDITLEKNIPIGAGLAGGSSDAAAVLVGLNLLWGLGLTQP-ELESLAAE  134 (308)
T ss_pred             -CCCHHHH--------HHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHH-HHHHHHHH
T ss_conf             -8649999--------9999999639998865899983688667888406899999999999847999989-99998751


Q ss_pred             HHHCCCCCCCCHHHHHHHHCCCEEEECCCCC--CCCCCCCCEEEEE-CCCCCCCHHHHHHHHHHHHCC-----CHHHHHH
Q ss_conf             6411577877345787653263024027852--0014788439997-497145379999999976412-----0689998
Q gi|254781018|r  165 IERLQHGKTGIIDSTTIVMGGIIYINPPQII--KNETLVGEWWAIN-TGMPESSTGECVSFVEQHFSQ-----SSIWSEF  236 (337)
Q Consensus       165 ~e~~~~~~~sg~D~~~~~~gg~~~~~~~~~~--~~~~~~~~~~~i~-~~~~~~st~~~~~~~~~~~~~-----~~~~~~~  236 (337)
T Consensus       135 l---------GsDVPffl~g~~a~~~G~Ge~l~pl~~~~~~~~llv~~P~~~vST~~~y~~~~~~~~~~~~~~~~~~~~~  205 (308)
T PRK02534        135 L---------GSDVPFCIAGGTQLCFGRGEILEPLPDLDSLGVVLAKYPSLSVSTPWAYKTYRQQFGDTYLSDEEDFEQR  205 (308)
T ss_pred             C---------CCCCCCEECCCEEEEECCCCEEEECCCCCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHH
T ss_conf             1---------6885502208518983588676788877656499995899982749999999875034335760345555


Q ss_pred             HHH--HHHHHHHHHCCCCHHHHHHHHHHHHHHHHC-CCCCHHHHHHHHHHHH-CCC-EEEECCCCCCCCCEEEEEEEECC
Q ss_conf             765--489999998387216899999959999971-8997799999999985-798-08950788678850899998579
Q gi|254781018|r  237 NAV--TNEMMENIQKKDAEKTYKSVRVNQSLLESI-GVVPETVGKFIRCIEN-NGG-SAKIAGAGSIRGEKAGLVLVGGY  311 (337)
Q Consensus       237 ~~i--~~~~~~al~~~d~~~l~~~~~~~~~ll~~l-~vs~~~l~~l~~~~~~-~g~-~ak~sGAG~~~Gg~~~~~l~~~~  311 (337)
T Consensus       206 ~~~l~~~~~~~~~~~~~~~~l~N-------dLe~~a~~~~P~i~~~~~~L~~~~Ga~~~~mSGSGst-----vFglf~~~  273 (308)
T PRK02534        206 RQALRSGSLLQAISAKDPPPLRN-------DLQKVVLPEYPQVAKLLELLSSLPGCLGTMMSGSGPT-----CFALFEDQ  273 (308)
T ss_pred             HHHCCCCHHHHHHHHCCHHHHHH-------HHHHHHHHCCHHHHHHHHHHHHCCCCCEEEEECHHHH-----HEEEECCH
T ss_conf             54213106889887347898864-------3699988739499999999974479888899724100-----03797899


Q ss_pred             -CHHHH-HHH------CCCEEEEEEECCCCEEE
Q ss_conf             -97999-974------59869999987997092
Q gi|254781018|r  312 -NPEKL-SSL------YGYTCYKIKEDKNGTML  336 (337)
Q Consensus       312 -~~~~~-~~~------~~~~~~~~~~~~~G~~i  336 (337)
T Consensus       274 ~~A~~a~~~l~~~~p~~~~~~~v~~~~~~g~~~  306 (308)
T PRK02534        274 EQAEQALEQVREAFADPGLDAWVCQFISHGIQL  306 (308)
T ss_pred             HHHHHHHHHHHHHCCCCCCCEEEECCCCCCEEE
T ss_conf             999999999998678999868975141787374