HHsearch alignment for GI: 254781018 and conserved domain: PRK03288
>PRK03288 consensus.
Probab=99.79 E-value=7.7e-17 Score=124.85 Aligned_cols=231 Identities=13% Similarity=0.156 Sum_probs=146.6
Q ss_pred ECCCEEEEE----CCCEE-ECCCEEEEEEECCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 858179997----44544-0795489987667279999984898299995576667532100123333433211111221
Q gi|254781018|r 14 IAPAKVILS----GEYSS-LYGASALAVAITFYLRALLTTIEPSLIRIINSQTIEYSFEACRLLGHQIDQRHRDFIAKKI 88 (337)
Q Consensus 14 ~APGKi~L~----GEh~v-~~G~~ai~~aI~~~~~v~i~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (337)
T Consensus 6 ~APAKINL~L~V~gkR~DGYH~i~S~~~~idl~D~i~i~~~~~~~i~~~~~~~-~-------~~----~--------~~N 65 (283)
T PRK03288 6 PSPAKLNLFLYITGQRADGYHTLQTLFQFLDYGDTLTIEPRDDGEIRLLTPVE-G-------VE----N--------EDN 65 (283)
T ss_pred CCCEEEECCCCCCCCCCCCCCEEEEEEEECCCCCEEEEEECCCCCEEEECCCC-C-------CC----C--------CCC
T ss_conf 86015811403388699998725789998178829999998999789955876-7-------87----7--------541
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHC
Q ss_conf 03347778889999987511566788769999805541038985303789999999998187754025899999986411
Q gi|254781018|r 89 PITSVLTHPNDLILYIFNRHLPHISCGISLDLHSTIPIGSGFGSSSAIISALSLALSSITHQPFCNKEKLIAETGYIERL 168 (337)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~i~s~iP~~~GLGSSaA~~va~~~al~~~~~~~~~~~~~~~~~a~~~e~~ 168 (337)
T Consensus 66 lv~ka~~~---l~~~~~~~~~~~~~~g~~I~l~KnIPv~AGLGGGSSdAAa~L~~L~~l~~l~ls~-~~l~~ia~~i--- 138 (283)
T PRK03288 66 LIVRAARL---LMKTAADSGRLPAGSGADISIDKRLPMGGGLGGGSSNAATVLVALNHLWQCGLSD-DELAELGLTL--- 138 (283)
T ss_pred HHHHHHHH---HHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCH-HHHHHHHHHH---
T ss_conf 89999999---9997644024566666079994367644567877615999999999985899999-9999999985---
Q ss_pred CCCCCCCHHHHHHHHCCCEEEECC-CCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf 577877345787653263024027-8520014788439997497145379999999976412068999876548999999
Q gi|254781018|r 169 QHGKTGIIDSTTIVMGGIIYINPP-QIIKNETLVGEWWAINTGMPESSTGECVSFVEQHFSQSSIWSEFNAVTNEMMENI 247 (337)
Q Consensus 169 ~~~~~sg~D~~~~~~gg~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~st~~~~~~~~~~~~~~~~~~~~~~i~~~~~~al 247 (337)
T Consensus 139 ------GaDVPffl~~~~a~~~G~Ge~l~~~~~~~~~~llv~P~~~vST~~vy~~~~~~~--~~~~~~~----~~~l~~~ 206 (283)
T PRK03288 139 ------GADVPVFVRGHAAFAEGVGEILTPVDPPEKWYLVAHPGVSIPTPVIFKDPELPR--NTPKRSI----ETLLKCE 206 (283)
T ss_pred ------CCCCCCEECCCCEEEECCCCEEEECCCCCCEEEEECCCCCCCHHHHHCCCCCCC--CCCCCCH----HHHHHCH
T ss_conf ------898310542775899828868147677875699989999978289844944467--8753489----9997371
Q ss_pred HCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCEEEECCCCC
Q ss_conf 83872168999999599999718997799999999985798089507886
Q gi|254781018|r 248 QKKDAEKTYKSVRVNQSLLESIGVVPETVGKFIRCIENNGGSAKIAGAGS 297 (337)
Q Consensus 248 ~~~d~~~l~~~~~~~~~ll~~l~vs~~~l~~l~~~~~~~g~~ak~sGAG~ 297 (337)
T Consensus 207 ~~Ndle~~a---------~~~----~peI~~~~~~l~~~~~-~~MSGSGS 242 (283)
T PRK03288 207 FSNDCEVIA---------RKR----FREVDAALSWLLEYAP-SRLTGTGA 242 (283)
T ss_pred HCCCHHHHH---------HHH----HHHHHHHHHHHHCCCC-CCEECHHH
T ss_conf 106469999---------875----5999999999855398-71226404