HHsearch alignment for GI: 254781018 and conserved domain: PRK04181
>PRK04181 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional.
Probab=99.65 E-value=9.3e-14 Score=105.43 Aligned_cols=180 Identities=17% Similarity=0.110 Sum_probs=117.2
Q ss_pred ECCCEEEEE----CCCEEECCCEEEEEEE-CCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 858179997----4454407954899876-67279999984898299995576667532100123333433211111221
Q gi|254781018|r 14 IAPAKVILS----GEYSSLYGASALAVAI-TFYLRALLTTIEPSLIRIINSQTIEYSFEACRLLGHQIDQRHRDFIAKKI 88 (337)
Q Consensus 14 ~APGKi~L~----GEh~v~~G~~ai~~aI-~~~~~v~i~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (337)
T Consensus 2 Ks~AKINL~L~V~~kRd~yH~l~s~~~~i~dl~D~i~i~~~~~~~~~~~~~~~----~---------~~--------~~N 60 (254)
T PRK04181 2 KSYAKVNIFLKITGKRGNYHELISRFVLVKDLFDEIEFVDDSAKSFEIIGNFD----C---------PL--------EEN 60 (254)
T ss_pred CCCCEECCCEEECCCCCCCCEEEEEEEEHHHCCEEEEEEECCCCCEEEECCCC----C---------CC--------CCC
T ss_conf 97653767435775349987325477782008579999988999589978888----8---------85--------415
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHC
Q ss_conf 03347778889999987511566788769999805541038985303789999999998187754025899999986411
Q gi|254781018|r 89 PITSVLTHPNDLILYIFNRHLPHISCGISLDLHSTIPIGSGFGSSSAIISALSLALSSITHQPFCNKEKLIAETGYIERL 168 (337)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~i~s~iP~~~GLGSSaA~~va~~~al~~~~~~~~~~~~~~~~~a~~~e~~ 168 (337)
T Consensus 61 lv~ka~~~l~---~~~~~~~~~~~~~~~~I~l~KnIP~gAGLGGGSSdAAa~L~~l~~~~~l~ls~-~~L~~ia~~l--- 133 (254)
T PRK04181 61 IIFKAYQELK---SKGFSNELIEFFSKLAIEVTKNIPTGAGLGGGSSNAATFLLMANEILNLKLSL-EELINIGSKI--- 133 (254)
T ss_pred HHHHHHHHHH---HHCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCH-HHHHHHHHHC---
T ss_conf 9999999998---75332343113664179995257665678874668999999999982899999-9999987531---
Q ss_pred CCCCCCCHHHHHHHHC-CCEEEEC-CCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHH
Q ss_conf 5778773457876532-6302402-785200147884399974971453799999999764
Q gi|254781018|r 169 QHGKTGIIDSTTIVMG-GIIYINP-PQIIKNETLVGEWWAINTGMPESSTGECVSFVEQHF 227 (337)
Q Consensus 169 ~~~~~sg~D~~~~~~g-g~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~st~~~~~~~~~~~ 227 (337)
T Consensus 134 ------GaDVPffl~g~~~a~~~G~Ge~l~~~~~~~~~~~lv~P~~~vST~~vy~~~~~~~ 188 (254)
T PRK04181 134 ------GADVAFFISGYKSANVSGIGEIIEEFEEEILNLEIYTPNIFCSTKAVYQAFRPEF 188 (254)
T ss_pred ------CCCCCEEECCCCEEEEECCCCEEEECCCCCCEEEEEECCCCCCHHHHHHHHHHHC
T ss_conf ------8982449757863788757738358777786599994989986799999875540