HHsearch alignment for GI: 254781018 and conserved domain: PRK04943
>PRK04943 consensus.
Probab=99.80 E-value=3.8e-17 Score=126.76 Aligned_cols=229 Identities=16% Similarity=0.177 Sum_probs=151.2
Q ss_pred CEEEECCCEEEEE----CCCEE-ECCCEEEEEEECCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 0899858179997----44544-079548998766727999998489829999557666753210012333343321111
Q gi|254781018|r 10 HAHSIAPAKVILS----GEYSS-LYGASALAVAITFYLRALLTTIEPSLIRIINSQTIEYSFEACRLLGHQIDQRHRDFI 84 (337)
Q Consensus 10 ~~~~~APGKi~L~----GEh~v-~~G~~ai~~aI~~~~~v~i~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (337)
T Consensus 5 ~~~~~aPAKINL~L~V~~kr~DGYH~i~S~~~~idl~D~l~i~~~~~~~i~~~~~~~--------~i~------------ 64 (288)
T PRK04943 5 TTRWPSPAKLNLFLYINGRTENGYHELQTLFQFLDHGDELTITANNSGNITLSPAIE--------GVP------------ 64 (288)
T ss_pred CEEEECCEEEECCCCCCCCCCCCCCEEEEEEEEECCCEEEEEEECCCCCEEEECCCC--------CCC------------
T ss_conf 748713116823402388799998715789998167509999998999889817867--------898------------
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 12210334777888999998751156678876999980554103898530378999999999818775402589999998
Q gi|254781018|r 85 AKKIPITSVLTHPNDLILYIFNRHLPHISCGISLDLHSTIPIGSGFGSSSAIISALSLALSSITHQPFCNKEKLIAETGY 164 (337)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~i~s~iP~~~GLGSSaA~~va~~~al~~~~~~~~~~~~~~~~~a~~ 164 (337)
T Consensus 65 ~~~Nli~kA~~--------~-l~~~~~~~~~~~I~l~KnIPv~AGLGGGSSnAAa~L~~Ln~l~~l~ls~-~~l~~ia~~ 134 (288)
T PRK04943 65 LEDNLIWKAAT--------A-LQNAAQCSLGAHIELHKILPMGGGIGGGSSNAATTLVALNYLWQTGLSD-DELAEIGLA 134 (288)
T ss_pred CCCCHHHHHHH--------H-HHHHHCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCH-HHHHHHHHH
T ss_conf 76749999999--------9-9997699988089999717875788876206999999999984799998-999998874
Q ss_pred HHHCCCCCCCCHHHHHHHHCCCEEEECC-CCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 6411577877345787653263024027-852001478843999749714537999999997641206899987654899
Q gi|254781018|r 165 IERLQHGKTGIIDSTTIVMGGIIYINPP-QIIKNETLVGEWWAINTGMPESSTGECVSFVEQHFSQSSIWSEFNAVTNEM 243 (337)
Q Consensus 165 ~e~~~~~~~sg~D~~~~~~gg~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~st~~~~~~~~~~~~~~~~~~~~~~i~~~~ 243 (337)
T Consensus 135 l---------GADVPffl~~~~a~~~G~GE~l~~~~~~~~~~lLv~P~~~iST~~vf~~~~~~~~~~--~~~~----~~~ 199 (288)
T PRK04943 135 L---------GADVPVFVRGFAAFAEGVGEKLSPATPEEKWYLVVRPNVSIATVDIFTHPDLTRNTP--KRDL----ETL 199 (288)
T ss_pred C---------CCCEEEEECCCCEEEECCCCEEEECCCCCCEEEEECCCCCCCCHHHHCCCHHCCCCC--CCCH----HHH
T ss_conf 3---------998576861776899868857426677776799987999972778805930013765--2179----998
Q ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCEEEECCCCC
Q ss_conf 999983872168999999599999718997799999999985798089507886
Q gi|254781018|r 244 MENIQKKDAEKTYKSVRVNQSLLESIGVVPETVGKFIRCIENNGGSAKIAGAGS 297 (337)
Q Consensus 244 ~~al~~~d~~~l~~~~~~~~~ll~~l~vs~~~l~~l~~~~~~~g~~ak~sGAG~ 297 (337)
T Consensus 200 ~~~~~~NDLE~~~~~~-------------~PeI~~~~~~l~~~~~-~~MSGSGs 239 (288)
T PRK04943 200 LNTPYVNDCEKIVRML-------------YPEVDKQLSWLLQYAP-SRLTGTGS 239 (288)
T ss_pred HHCHHCCCCHHHHHHH-------------CHHHHHHHHHHHCCCC-CEEECHHH
T ss_conf 7360047857999986-------------8899999999856598-71326405