HHsearch alignment for GI: 254781018 and conserved domain: TIGR00154
>TIGR00154 ispE 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; InterPro: IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase is a member of the family of GHMP kinases that were previously designated as conserved hypothetical protein YchB or as isopentenyl monophosphate kinase. In Lycopersicon esculentum (tomato) and Escherichia coli the protein has been indentified as 4-diphosphocytidyl-2C-methyl-D-erythritol kinase, an enzyme of the deoxyxylulose phosphate pathway of terpenoid biosynthesis.; GO: 0050515 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity, 0016114 terpenoid biosynthetic process.
Probab=99.70 E-value=5e-16 Score=119.72 Aligned_cols=264 Identities=18% Similarity=0.214 Sum_probs=168.6
Q ss_pred EEEECCCEEEEE----CCCEE-ECCCEEEEEEECCCEEEEEEECC-CCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 899858179997----44544-07954899876672799999848-9829999557666753210012333343321111
Q gi|254781018|r 11 AHSIAPAKVILS----GEYSS-LYGASALAVAITFYLRALLTTIE-PSLIRIINSQTIEYSFEACRLLGHQIDQRHRDFI 84 (337)
Q Consensus 11 ~~~~APGKi~L~----GEh~v-~~G~~ai~~aI~~~~~v~i~~~~-~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (337)
T Consensus 4 ~~~~~PAK~NLFL~I~~krpdGYH~L~~~~~~~~~gD~i~i~~~~q~~~i~l~~~~~~-----------~~~e~~NL~yr 72 (322)
T TIGR00154 4 IVFPAPAKINLFLYILGKRPDGYHELQMLMQFIDLGDKIEISVRSQDDDIRLSKGDSD-----------VPDEERNLIYR 72 (322)
T ss_pred CEECCCCCCCCHHHCCCCCCCCCEEHHHHHHHHHCCCEEEEEEECCCCCEEECCCCCC-----------CCCCHHHHHHH
T ss_conf 1004887321113101679985231333334562167379998535784787377898-----------88620106999
Q ss_pred CCCCCHHHHHHHHHHHHHHH-HHHCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf 12210334777888999998-75115667887699998055410389853037899999999981877540258999999
Q gi|254781018|r 85 AKKIPITSVLTHPNDLILYI-FNRHLPHISCGISLDLHSTIPIGSGFGSSSAIISALSLALSSITHQPFCNKEKLIAETG 163 (337)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~i~i~s~iP~~~GLGSSaA~~va~~~al~~~~~~~~~~~~~~~~~a~ 163 (337)
T Consensus 73 Aa~Ll~--------~~~~~~nfsH~~~~~~~G~~I~~~K~iP~~aGLgGGSsdAA~~L~~LN~LW~~~LS-~~EL~~lG~ 143 (322)
T TIGR00154 73 AAKLLK--------NKANSKNFSHSVIKVKKGVNIEITKVIPMAAGLGGGSSDAAAVLVGLNQLWNLNLS-LEELAELGA 143 (322)
T ss_pred HHHHHH--------HHHHCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCC-HHHHHHHHH
T ss_conf 999999--------85100233343012567614898641466577654045799999987677621688-789999988
Q ss_pred HHHHCCCCCCCCHHHHHHHHC-CCEEEEC-CCCCC-CC-CCCCCEEEEECC-CCCCCHHHHHHHHHHHHCCCHH----HH
Q ss_conf 864115778773457876532-6302402-78520-01-478843999749-7145379999999976412068----99
Q gi|254781018|r 164 YIERLQHGKTGIIDSTTIVMG-GIIYINP-PQIIK-NE-TLVGEWWAINTG-MPESSTGECVSFVEQHFSQSSI----WS 234 (337)
Q Consensus 164 ~~e~~~~~~~sg~D~~~~~~g-g~~~~~~-~~~~~-~~-~~~~~~~~i~~~-~~~~st~~~~~~~~~~~~~~~~----~~ 234 (337)
T Consensus 144 ~l---------GaDvpffv~GY~~A~AtG~GE~i~~~~e~P~e~W~~~~kP~~~~~ST~~vyq~~~qkfGknyLp~~~~~ 214 (322)
T TIGR00154 144 TL---------GADVPFFVSGYGTAFATGRGEIITPLEEEPPEKWVVIAKPRSVSVSTAVVYQAYKQKFGKNYLPRNTPK 214 (322)
T ss_pred HH---------CCCCEEEECCCCEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCCCCH
T ss_conf 74---------698307863633121123442505788898740388972798532738987124553152247877765
Q ss_pred HHHHHHH---HHHHHHHCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHCCC-EEE-ECCCCCCCCCEEEEEEE
Q ss_conf 9876548---999999838721689999995999997189-97799999999985798-089-50788678850899998
Q gi|254781018|r 235 EFNAVTN---EMMENIQKKDAEKTYKSVRVNQSLLESIGV-VPETVGKFIRCIENNGG-SAK-IAGAGSIRGEKAGLVLV 308 (337)
Q Consensus 235 ~~~~i~~---~~~~al~~~d~~~l~~~~~~~~~ll~~l~v-s~~~l~~l~~~~~~~g~-~ak-~sGAG~~~Gg~~~~~l~ 308 (337)
T Consensus 215 ~~~~ktihaG~~l~~i~~~~~~~~~~~~---~NDlEkv~l~~~~~V~~~l~~l~~~g~~~~~f~sGsG~-----~vF~l~ 286 (322)
T TIGR00154 215 RAKEKTIHAGGLLKKIEEKLLQLLDSNL---KNDLEKVALDAHTEVAQALNWLLEYGLAPERFLSGSGP-----CVFALF 286 (322)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHC---CCCCCHHHHCCCCCHHHHHHHHHHHCCCCEEEEECCCH-----HHHHCC
T ss_conf 6776320025102456676577665404---77202000015761899999998605884257644854-----664215
Q ss_pred ECC
Q ss_conf 579
Q gi|254781018|r 309 GGY 311 (337)
Q Consensus 309 ~~~ 311 (337)
T Consensus 287 ~~e 289 (322)
T TIGR00154 287 DEE 289 (322)
T ss_pred HHH
T ss_conf 114