HHsearch alignment for GI: 254781018 and conserved domain: TIGR00154

>TIGR00154 ispE 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; InterPro: IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase is a member of the family of GHMP kinases that were previously designated as conserved hypothetical protein YchB or as isopentenyl monophosphate kinase. In Lycopersicon esculentum (tomato) and Escherichia coli the protein has been indentified as 4-diphosphocytidyl-2C-methyl-D-erythritol kinase, an enzyme of the deoxyxylulose phosphate pathway of terpenoid biosynthesis.; GO: 0050515 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity, 0016114 terpenoid biosynthetic process.
Probab=99.70  E-value=5e-16  Score=119.72  Aligned_cols=264  Identities=18%  Similarity=0.214  Sum_probs=168.6

Q ss_pred             EEEECCCEEEEE----CCCEE-ECCCEEEEEEECCCEEEEEEECC-CCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             899858179997----44544-07954899876672799999848-9829999557666753210012333343321111
Q gi|254781018|r   11 AHSIAPAKVILS----GEYSS-LYGASALAVAITFYLRALLTTIE-PSLIRIINSQTIEYSFEACRLLGHQIDQRHRDFI   84 (337)
Q Consensus        11 ~~~~APGKi~L~----GEh~v-~~G~~ai~~aI~~~~~v~i~~~~-~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (337)
T Consensus         4 ~~~~~PAK~NLFL~I~~krpdGYH~L~~~~~~~~~gD~i~i~~~~q~~~i~l~~~~~~-----------~~~e~~NL~yr   72 (322)
T TIGR00154         4 IVFPAPAKINLFLYILGKRPDGYHELQMLMQFIDLGDKIEISVRSQDDDIRLSKGDSD-----------VPDEERNLIYR   72 (322)
T ss_pred             CEECCCCCCCCHHHCCCCCCCCCEEHHHHHHHHHCCCEEEEEEECCCCCEEECCCCCC-----------CCCCHHHHHHH
T ss_conf             1004887321113101679985231333334562167379998535784787377898-----------88620106999


Q ss_pred             CCCCCHHHHHHHHHHHHHHH-HHHCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf             12210334777888999998-75115667887699998055410389853037899999999981877540258999999
Q gi|254781018|r   85 AKKIPITSVLTHPNDLILYI-FNRHLPHISCGISLDLHSTIPIGSGFGSSSAIISALSLALSSITHQPFCNKEKLIAETG  163 (337)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~i~i~s~iP~~~GLGSSaA~~va~~~al~~~~~~~~~~~~~~~~~a~  163 (337)
T Consensus        73 Aa~Ll~--------~~~~~~nfsH~~~~~~~G~~I~~~K~iP~~aGLgGGSsdAA~~L~~LN~LW~~~LS-~~EL~~lG~  143 (322)
T TIGR00154        73 AAKLLK--------NKANSKNFSHSVIKVKKGVNIEITKVIPMAAGLGGGSSDAAAVLVGLNQLWNLNLS-LEELAELGA  143 (322)
T ss_pred             HHHHHH--------HHHHCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCC-HHHHHHHHH
T ss_conf             999999--------85100233343012567614898641466577654045799999987677621688-789999988


Q ss_pred             HHHHCCCCCCCCHHHHHHHHC-CCEEEEC-CCCCC-CC-CCCCCEEEEECC-CCCCCHHHHHHHHHHHHCCCHH----HH
Q ss_conf             864115778773457876532-6302402-78520-01-478843999749-7145379999999976412068----99
Q gi|254781018|r  164 YIERLQHGKTGIIDSTTIVMG-GIIYINP-PQIIK-NE-TLVGEWWAINTG-MPESSTGECVSFVEQHFSQSSI----WS  234 (337)
Q Consensus       164 ~~e~~~~~~~sg~D~~~~~~g-g~~~~~~-~~~~~-~~-~~~~~~~~i~~~-~~~~st~~~~~~~~~~~~~~~~----~~  234 (337)
T Consensus       144 ~l---------GaDvpffv~GY~~A~AtG~GE~i~~~~e~P~e~W~~~~kP~~~~~ST~~vyq~~~qkfGknyLp~~~~~  214 (322)
T TIGR00154       144 TL---------GADVPFFVSGYGTAFATGRGEIITPLEEEPPEKWVVIAKPRSVSVSTAVVYQAYKQKFGKNYLPRNTPK  214 (322)
T ss_pred             HH---------CCCCEEEECCCCEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCCCCH
T ss_conf             74---------698307863633121123442505788898740388972798532738987124553152247877765


Q ss_pred             HHHHHHH---HHHHHHHCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHCCC-EEE-ECCCCCCCCCEEEEEEE
Q ss_conf             9876548---999999838721689999995999997189-97799999999985798-089-50788678850899998
Q gi|254781018|r  235 EFNAVTN---EMMENIQKKDAEKTYKSVRVNQSLLESIGV-VPETVGKFIRCIENNGG-SAK-IAGAGSIRGEKAGLVLV  308 (337)
Q Consensus       235 ~~~~i~~---~~~~al~~~d~~~l~~~~~~~~~ll~~l~v-s~~~l~~l~~~~~~~g~-~ak-~sGAG~~~Gg~~~~~l~  308 (337)
T Consensus       215 ~~~~ktihaG~~l~~i~~~~~~~~~~~~---~NDlEkv~l~~~~~V~~~l~~l~~~g~~~~~f~sGsG~-----~vF~l~  286 (322)
T TIGR00154       215 RAKEKTIHAGGLLKKIEEKLLQLLDSNL---KNDLEKVALDAHTEVAQALNWLLEYGLAPERFLSGSGP-----CVFALF  286 (322)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHC---CCCCCHHHHCCCCCHHHHHHHHHHHCCCCEEEEECCCH-----HHHHCC
T ss_conf             6776320025102456676577665404---77202000015761899999998605884257644854-----664215


Q ss_pred             ECC
Q ss_conf             579
Q gi|254781018|r  309 GGY  311 (337)
Q Consensus       309 ~~~  311 (337)
T Consensus       287 ~~e  289 (322)
T TIGR00154       287 DEE  289 (322)
T ss_pred             HHH
T ss_conf             114