HHsearch results for GI: 254781018 and protein with PDBid: 1kkh_A

>1kkh_A Mevalonate kinase; mixed beta sheet, phosphate-binding loop, beta-alpha-beta, transferase; 2.40A {Methanocaldococcus jannaschii} SCOP: d.14.1.5 d.58.26.3 PDB: 1vis_A
Probab=100.00  E-value=0  Score=333.77  Aligned_cols=305  Identities=21%  Similarity=0.225  Sum_probs=235.1

Q ss_pred             CCCEEEECCCEEEEECCCEEECCCEEEEEEECCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             96089985817999744544079548998766727999998489829999557666753210012333343321111122
Q gi|254781018|r    8 TPHAHSIAPAKVILSGEYSSLYGASALAVAITFYLRALLTTIEPSLIRIINSQTIEYSFEACRLLGHQIDQRHRDFIAKK   87 (337)
Q Consensus         8 ~p~~~~~APGKi~L~GEh~v~~G~~ai~~aI~~~~~v~i~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (337)
                      .+.++++|||||+|+|||+||+|++||++|||++++++++++++..+++.+............    ..       ....
T Consensus         3 ~~~~~v~aPgki~L~GEh~v~~G~~al~~aI~~~~~v~i~~~~~~~i~i~~~~~~~~~~~~~~----~~-------~~~~   71 (317)
T 1kkh_A            3 GSHMIIETPSKVILFGEHAVVYGYRAISMAIDLTSTIEIKETQEDEIILNLNDLNKSLGLNLN----EI-------KNIN   71 (317)
T ss_dssp             TCCEEEEEEEEEEEECTTGGGGTCCEEEEEEEEEEEEEEEECCSSEEEEEETTTTEEEEEETT----TG-------GGCC
T ss_pred             CCEEEEEEEEEEEEECCCCEECCCCEEEEEECCEEEEEEEECCCCEEEEEECCCCCCEEEEHH----HC-------CCCC
T ss_conf             983999931099998167134799889999626599999998899799997478862688601----13-------2358


Q ss_pred             CCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q ss_conf             10334777888999998751156678876999980554103898530378999999999818775402589999998641
Q gi|254781018|r   88 IPITSVLTHPNDLILYIFNRHLPHISCGISLDLHSTIPIGSGFGSSSAIISALSLALSSITHQPFCNKEKLIAETGYIER  167 (337)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~i~s~iP~~~GLGSSaA~~va~~~al~~~~~~~~~~~~~~~~~a~~~e~  167 (337)
                      .....+..+....+.............|+++.++|+||.++|||||||++||++.+++++++++++ ++++.++|+.+|+
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~i~s~iP~g~GLGSSsA~~va~~~al~~~~~~~l~-~~el~~la~~~E~  150 (317)
T 1kkh_A           72 PNNFGDFKYCLCAIKNTLDYLNIEPKTGFKINISSKIPISCGLGSSASITIGTIKAVSGFYNKELK-DDEIAKLGYMVEK  150 (317)
T ss_dssp             GGGSGGGHHHHHHHHHHHHHTTCCCCSCEEEEEEECSCSSSSSCHHHHHHHHHHHHHHHTTTCCCC-HHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHH
T ss_conf             554422899999999999982878898669999678988778745689999998876444101588-7887766688986


Q ss_pred             CCCCCCCCHHHHHHHHCCCEEEECCCCCCCC------CCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf             1577877345787653263024027852001------4788439997497145379999999976412068999876548
Q gi|254781018|r  168 LQHGKTGIIDSTTIVMGGIIYINPPQIIKNE------TLVGEWWAINTGMPESSTGECVSFVEQHFSQSSIWSEFNAVTN  241 (337)
Q Consensus       168 ~~~~~~sg~D~~~~~~gg~~~~~~~~~~~~~------~~~~~~~~i~~~~~~~st~~~~~~~~~~~~~~~~~~~~~~i~~  241 (337)
                      .+++.+|++|++++.|||+++++..+.....      .....++++.++....+|.+.+..+++.....+.+.++.   .
T Consensus       151 ~~~~~~s~~D~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~---~  227 (317)
T 1kkh_A          151 EIQGKASITDTSTITYKGILEIKNNKFRKIKGEFEEFLKNCKFLIVYAEKRKKKTAELVNEVAKIENKDEIFKEID---K  227 (317)
T ss_dssp             HHSSSCCSHHHHHHHHCSEEEESSSCEEEECHHHHHHHHTCCEEEEEEECCCSCHHHHHHHHHTCTTHHHHHHHHH---H
T ss_pred             HCCCCCCCCCHHHHCCCCEEEEECCCCEEECCCHHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH---H
T ss_conf             2288888763034305865996179613611202001111222200206743142989998887766778999988---8


Q ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCEEEECCCCCCCCCEEEEEEEECCCHHHHH-HH-
Q ss_conf             9999998387216899999959999971899779999999998579808950788678850899998579979999-74-
Q gi|254781018|r  242 EMMENIQKKDAEKTYKSVRVNQSLLESIGVVPETVGKFIRCIENNGGSAKIAGAGSIRGEKAGLVLVGGYNPEKLS-SL-  319 (337)
Q Consensus       242 ~~~~al~~~d~~~l~~~~~~~~~ll~~l~vs~~~l~~l~~~~~~~g~~ak~sGAG~~~Gg~~~~~l~~~~~~~~~~-~~-  319 (337)
                      .+.++|+.+|++.++++|+++|.+++++++++|+++.|++.+++.|+++|+||||   ||+|++++....+.+.+. ++ 
T Consensus       228 ~~~eal~~~d~~~l~~~m~~~~~~~~~~~i~~~~l~~l~~~~~~~g~~ak~sGaG---~Gg~~~~~~~~~~~~~~~~~~~  304 (317)
T 1kkh_A          228 VIDEALKIKNKEDFGKLMTKNHELLKKLNISTPKLDRIVDIGNRFGFGAKLTGAG---GGGCVIILVNEEKEKELLKELN  304 (317)
T ss_dssp             HHHHHHHCCSHHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHSSEEEECSSS---SSEEEEEECCGGGHHHHHHHHH
T ss_pred             HHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCEEEEECCC---CCCEEEEEECHHHHHHHHHHHH
T ss_conf             7888765000578999999979999872899889999999998379589980788---6388999988157999999999


Q ss_pred             -CCCEEEEEEEC
Q ss_conf             -59869999987
Q gi|254781018|r  320 -YGYTCYKIKED  330 (337)
Q Consensus       320 -~~~~~~~~~~~  330 (337)
                       .+++++.+++.
T Consensus       305 ~~~~~~~~~~~~  316 (317)
T 1kkh_A          305 KEDVRIFNCRMM  316 (317)
T ss_dssp             TSSCEEEEECBC
T ss_pred             HCCCEEEEEEEC
T ss_conf             749839999944