HHsearch results for GI: 254781018 and protein with PDBid: 1kkh_A
>1kkh_A Mevalonate kinase; mixed beta sheet, phosphate-binding loop, beta-alpha-beta, transferase; 2.40A {Methanocaldococcus jannaschii} SCOP: d.14.1.5 d.58.26.3 PDB: 1vis_A
Probab=100.00 E-value=0 Score=333.77 Aligned_cols=305 Identities=21% Similarity=0.225 Sum_probs=235.1
Q ss_pred CCCEEEECCCEEEEECCCEEECCCEEEEEEECCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 96089985817999744544079548998766727999998489829999557666753210012333343321111122
Q gi|254781018|r 8 TPHAHSIAPAKVILSGEYSSLYGASALAVAITFYLRALLTTIEPSLIRIINSQTIEYSFEACRLLGHQIDQRHRDFIAKK 87 (337)
Q Consensus 8 ~p~~~~~APGKi~L~GEh~v~~G~~ai~~aI~~~~~v~i~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (337)
.+.++++|||||+|+|||+||+|++||++|||++++++++++++..+++.+............ .. ....
T Consensus 3 ~~~~~v~aPgki~L~GEh~v~~G~~al~~aI~~~~~v~i~~~~~~~i~i~~~~~~~~~~~~~~----~~-------~~~~ 71 (317)
T 1kkh_A 3 GSHMIIETPSKVILFGEHAVVYGYRAISMAIDLTSTIEIKETQEDEIILNLNDLNKSLGLNLN----EI-------KNIN 71 (317)
T ss_dssp TCCEEEEEEEEEEEECTTGGGGTCCEEEEEEEEEEEEEEEECCSSEEEEEETTTTEEEEEETT----TG-------GGCC
T ss_pred CCEEEEEEEEEEEEECCCCEECCCCEEEEEECCEEEEEEEECCCCEEEEEECCCCCCEEEEHH----HC-------CCCC
T ss_conf 983999931099998167134799889999626599999998899799997478862688601----13-------2358
Q ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q ss_conf 10334777888999998751156678876999980554103898530378999999999818775402589999998641
Q gi|254781018|r 88 IPITSVLTHPNDLILYIFNRHLPHISCGISLDLHSTIPIGSGFGSSSAIISALSLALSSITHQPFCNKEKLIAETGYIER 167 (337)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~i~s~iP~~~GLGSSaA~~va~~~al~~~~~~~~~~~~~~~~~a~~~e~ 167 (337)
.....+..+....+.............|+++.++|+||.++|||||||++||++.+++++++++++ ++++.++|+.+|+
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~i~s~iP~g~GLGSSsA~~va~~~al~~~~~~~l~-~~el~~la~~~E~ 150 (317)
T 1kkh_A 72 PNNFGDFKYCLCAIKNTLDYLNIEPKTGFKINISSKIPISCGLGSSASITIGTIKAVSGFYNKELK-DDEIAKLGYMVEK 150 (317)
T ss_dssp GGGSGGGHHHHHHHHHHHHHTTCCCCSCEEEEEEECSCSSSSSCHHHHHHHHHHHHHHHTTTCCCC-HHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHH
T ss_conf 554422899999999999982878898669999678988778745689999998876444101588-7887766688986
Q ss_pred CCCCCCCCHHHHHHHHCCCEEEECCCCCCCC------CCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 1577877345787653263024027852001------4788439997497145379999999976412068999876548
Q gi|254781018|r 168 LQHGKTGIIDSTTIVMGGIIYINPPQIIKNE------TLVGEWWAINTGMPESSTGECVSFVEQHFSQSSIWSEFNAVTN 241 (337)
Q Consensus 168 ~~~~~~sg~D~~~~~~gg~~~~~~~~~~~~~------~~~~~~~~i~~~~~~~st~~~~~~~~~~~~~~~~~~~~~~i~~ 241 (337)
.+++.+|++|++++.|||+++++..+..... .....++++.++....+|.+.+..+++.....+.+.++. .
T Consensus 151 ~~~~~~s~~D~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~---~ 227 (317)
T 1kkh_A 151 EIQGKASITDTSTITYKGILEIKNNKFRKIKGEFEEFLKNCKFLIVYAEKRKKKTAELVNEVAKIENKDEIFKEID---K 227 (317)
T ss_dssp HHSSSCCSHHHHHHHHCSEEEESSSCEEEECHHHHHHHHTCCEEEEEEECCCSCHHHHHHHHHTCTTHHHHHHHHH---H
T ss_pred HCCCCCCCCCHHHHCCCCEEEEECCCCEEECCCHHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH---H
T ss_conf 2288888763034305865996179613611202001111222200206743142989998887766778999988---8
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCEEEECCCCCCCCCEEEEEEEECCCHHHHH-HH-
Q ss_conf 9999998387216899999959999971899779999999998579808950788678850899998579979999-74-
Q gi|254781018|r 242 EMMENIQKKDAEKTYKSVRVNQSLLESIGVVPETVGKFIRCIENNGGSAKIAGAGSIRGEKAGLVLVGGYNPEKLS-SL- 319 (337)
Q Consensus 242 ~~~~al~~~d~~~l~~~~~~~~~ll~~l~vs~~~l~~l~~~~~~~g~~ak~sGAG~~~Gg~~~~~l~~~~~~~~~~-~~- 319 (337)
.+.++|+.+|++.++++|+++|.+++++++++|+++.|++.+++.|+++|+|||| ||+|++++....+.+.+. ++
T Consensus 228 ~~~eal~~~d~~~l~~~m~~~~~~~~~~~i~~~~l~~l~~~~~~~g~~ak~sGaG---~Gg~~~~~~~~~~~~~~~~~~~ 304 (317)
T 1kkh_A 228 VIDEALKIKNKEDFGKLMTKNHELLKKLNISTPKLDRIVDIGNRFGFGAKLTGAG---GGGCVIILVNEEKEKELLKELN 304 (317)
T ss_dssp HHHHHHHCCSHHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHSSEEEECSSS---SSEEEEEECCGGGHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCEEEEECCC---CCCEEEEEECHHHHHHHHHHHH
T ss_conf 7888765000578999999979999872899889999999998379589980788---6388999988157999999999
Q ss_pred -CCCEEEEEEEC
Q ss_conf -59869999987
Q gi|254781018|r 320 -YGYTCYKIKED 330 (337)
Q Consensus 320 -~~~~~~~~~~~ 330 (337)
.+++++.+++.
T Consensus 305 ~~~~~~~~~~~~ 316 (317)
T 1kkh_A 305 KEDVRIFNCRMM 316 (317)
T ss_dssp TSSCEEEEECBC
T ss_pred HCCCEEEEEEEC
T ss_conf 749839999944