HHsearch results for GI: 254781018 and protein with PDBid: 1kvk_A
>1kvk_A MK, mevalonate kinase; RMK, ATP, GHMP, transferase; HET: ATP; 2.40A {Rattus norvegicus} SCOP: d.14.1.5 d.58.26.3 PDB: 2r42_A* 2r3v_A
Probab=100.00 E-value=0 Score=344.43 Aligned_cols=325 Identities=18% Similarity=0.181 Sum_probs=244.5
Q ss_pred CEEEECCCEEEEECCCEEECCCEEEEEEECCCEEEEEEECCCCEEEEEECCCCCCC-CCCCCCCCCC-C---CCCCCCCC
Q ss_conf 08998581799974454407954899876672799999848982999955766675-3210012333-3---43321111
Q gi|254781018|r 10 HAHSIAPAKVILSGEYSSLYGASALAVAITFYLRALLTTIEPSLIRIINSQTIEYS-FEACRLLGHQ-I---DQRHRDFI 84 (337)
Q Consensus 10 ~~~~~APGKi~L~GEh~v~~G~~ai~~aI~~~~~v~i~~~~~~~~~~~s~~~~~~~-~~~~~~~~~~-~---~~~~~~~~ 84 (337)
-.+++|||||+|+|||+||+|++||++|||+|+++.+++++++.+++.+....... +......... . ...+....
T Consensus 5 ~~~vsAPGkv~L~GEH~d~~G~~vl~~AI~~~~~v~v~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (395)
T 1kvk_A 5 VLLVSAPGKVILHGEHAVVHGKVALAVALNLRTFLVLRPQSNGKVSLNLPNVGIKQVWDVATLQLLDTGFLEQGDVPAPT 84 (395)
T ss_dssp CEEEEEEEEEEEECTTGGGGTCCEEEEEEEEEEEEEEEECSSSEEEEEETTTTEEEEEEHHHHHTSCC------------
T ss_pred EEEEEEEEEEEEEECCEEECCCCEEEEEECCCEEEEEEECCCCEEEEEECCCCCCCEECCCCCCCCCCCCCCCCCCCCCH
T ss_conf 29999755999981773666997799996265899999988987999966888651212110000123433345666530
Q ss_pred CC-------------CCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCC
Q ss_conf 12-------------21033477788899999875115667887699998055410389853037899999999981877
Q gi|254781018|r 85 AK-------------KIPITSVLTHPNDLILYIFNRHLPHISCGISLDLHSTIPIGSGFGSSSAIISALSLALSSITHQP 151 (337)
Q Consensus 85 ~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~i~s~iP~~~GLGSSaA~~va~~~al~~~~~~~ 151 (337)
.. ............................|+++.++|++|.++|||||||++||++.+++.++++.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~i~S~iP~g~GLgSSaA~~va~~~al~~~~~~~ 164 (395)
T 1kvk_A 85 LEQLEKLKKVAGLPRDCVGNEGLSLLAFLYLYLAICRKQRTLPSLDIMVWSELPPGAGLGSSAAYSVCVAAALLTACEEV 164 (395)
T ss_dssp ----CHHHHHHTSSCCCSCTTHHHHHHHHHHHHHHHTTSSSCCCEEEEEEESSCTTSSSCHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHCCCCHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCC
T ss_conf 56788765430462010121103678899999999853788888699996447732476512899999999999984544
Q ss_pred CCC--------------HHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCEEEECCCCCCCCCCCCCEEEEECCCCCCCHH
Q ss_conf 540--------------258999999864115778773457876532630240278520014788439997497145379
Q gi|254781018|r 152 FCN--------------KEKLIAETGYIERLQHGKTGIIDSTTIVMGGIIYINPPQIIKNETLVGEWWAINTGMPESSTG 217 (337)
Q Consensus 152 ~~~--------------~~~~~~~a~~~e~~~~~~~sg~D~~~~~~gg~~~~~~~~~~~~~~~~~~~~~i~~~~~~~st~ 217 (337)
... .+++.++++.+|+.++|.+||+|++++.+|+.+.++..+.......+...+++..+....+|.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~i~~la~~~E~~~~g~~~G~d~~~~~~g~~~~~~~~~~~~~~~~~~~~l~l~~t~~~~~t~ 244 (395)
T 1kvk_A 165 TNPLKDRGSIGSWPEEDLKSINKWAYEGERVIHGNPSGVDNSVSTWGGALRYQQGKMSSLKRLPALQILLTNTKVPRSTK 244 (395)
T ss_dssp CCGGGGCCSEECCCHHHHHHHHHHHHHHHHHHHSSCCSHHHHHHHHCSEEEESSSCEEECSCCCCEEEEEEECCCCCCHH
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCEEEEECCCCCCCCCCCCCCEEEECCCCCCCHH
T ss_conf 44310000001111047999999999999886588850357787558837851244323456765205783268765027
Q ss_pred HHHHHHHHHHCCC-----HHHHHHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 9999999764120-----6899987654899999983-------872168999999599999718997799999999985
Q gi|254781018|r 218 ECVSFVEQHFSQS-----SIWSEFNAVTNEMMENIQK-------KDAEKTYKSVRVNQSLLESIGVVPETVGKFIRCIEN 285 (337)
Q Consensus 218 ~~~~~~~~~~~~~-----~~~~~~~~i~~~~~~al~~-------~d~~~l~~~~~~~~~ll~~l~vs~~~l~~l~~~~~~ 285 (337)
+.+..++...... ..++++.+++.++.++++. +|++.++++|+++|.++++++||+|++|+|++.+++
T Consensus 245 ~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~d~~~lg~lm~~~~~~l~~l~vs~peld~l~~~a~~ 324 (395)
T 1kvk_A 245 ALVAGVRSRLIKFPEIMAPLLTSIDAISLECERVLGEMAAAPVPEQYLVLEELMDMNQHHLNALGVGHASLDQLCQVTAA 324 (395)
T ss_dssp HHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 88999999998646679999999999999999999988776651134558999998099887628998999999999985
Q ss_pred CCCEEEECCCCCCCCCEEEEEEEECCCHHHH-H------HHCCCEEEEEEECCCCEEEC
Q ss_conf 7980895078867885089999857997999-9------74598699999879970929
Q gi|254781018|r 286 NGGSAKIAGAGSIRGEKAGLVLVGGYNPEKL-S------SLYGYTCYKIKEDKNGTMLA 337 (337)
Q Consensus 286 ~g~~ak~sGAG~~~Gg~~~~~l~~~~~~~~~-~------~~~~~~~~~~~~~~~G~~i~ 337 (337)
.|+|+|+|||| ||+|.++|.++.+.++. . +..+++++.++++.+|++|.
T Consensus 325 ~g~gaklsGAG---~GG~~ial~~~~~~~~~~~~~~~~~~~~g~~~~~~~i~~~Gv~i~ 380 (395)
T 1kvk_A 325 HGLHSKLTGAG---GGGCGITLLKPGLERAKVEAAKQALTGCGFDCWETSIGAPGVSMH 380 (395)
T ss_dssp TTCEEEECSSC---SSSEEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEEESCCCSEEE
T ss_pred CCCEEEEECCC---CCCEEEEEECCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCEEEE
T ss_conf 79689983667---756899997785049999999999997699699987289937995