HHsearch results for GI: 254781018 and protein with PDBid: 3k17_A
>3k17_A LIN0012 protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics, NEW YORK SGX research center for structural genomics; HET: PGE; 2.10A {Listeria innocua}
Probab=100.00 E-value=0 Score=321.50 Aligned_cols=309 Identities=17% Similarity=0.197 Sum_probs=225.5
Q ss_pred CCCEEEECCCEEEEECCCEEEC-CCEEEEEEECCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 9608998581799974454407-954899876672799999848982999955766675321001233334332111112
Q gi|254781018|r 8 TPHAHSIAPAKVILSGEYSSLY-GASALAVAITFYLRALLTTIEPSLIRIINSQTIEYSFEACRLLGHQIDQRHRDFIAK 86 (337)
Q Consensus 8 ~p~~~~~APGKi~L~GEh~v~~-G~~ai~~aI~~~~~v~i~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (337)
++.+.++|||||+|+|||+||+ |.+||++|||+++++++++++++.+++.+..+.. .+..... . ..
T Consensus 4 ~~~i~v~aPGKv~L~GEh~v~~~G~~al~~AI~~~~~v~i~~~~~~~i~i~~~~~~~-~~~~~~~----~--------~~ 70 (365)
T 3k17_A 4 KNKLQVKIPGKLYVAGEYAVVESGHTAILTAVNRYITLTLEDSERNELWIPHYENPV-SWPIGGE----L--------KP 70 (365)
T ss_dssp -CCEEEEEEEEEEEECTTGGGSTTCEEEEEEEEEEEEEEEEECSSCEEECTTCSSCB-CCCTTSC----C--------CC
T ss_pred CCEEEEEEEEEEEEEECCEEECCCCEEEEEEECCEEEEEEEECCCCEEEEEECCCCE-EEEECCC----C--------CC
T ss_conf 887999996599999868981599669999981509999999899879999668870-5885365----5--------66
Q ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCC----CCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 210334777888999998751156678876999980554----1038985303789999999998187754025899999
Q gi|254781018|r 87 KIPITSVLTHPNDLILYIFNRHLPHISCGISLDLHSTIP----IGSGFGSSSAIISALSLALSSITHQPFCNKEKLIAET 162 (337)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~i~s~iP----~~~GLGSSaA~~va~~~al~~~~~~~~~~~~~~~~~a 162 (337)
......+.......+..... ..+....|+++.+++++| .++|||||||++||++.+++.+++..++ .+++.+++
T Consensus 71 ~~~~~~~~~~~~~~~~~~l~-~~~~~~~g~~i~i~s~ip~~~g~gsGLgSSaA~~va~~~al~~~~~~~~~-~~~l~~~a 148 (365)
T 3k17_A 71 DGEHWTFTAEAINIATTFLK-SEGIELTPVKMVIETELIDQSGAKYGLGSSAAATVAVINALMTKFYPEIS-MLKKFKLA 148 (365)
T ss_dssp SCGGGHHHHHHHHHHHHHHH-HTTCCCCCEEEEEEESSBCTTSCBCSSCHHHHHHHHHHHHHHHHHCTTSC-HHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHH-HCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC-HHHHHHHH
T ss_conf 66511689999999999999-80999898359998752688886764679999999999999985054321-78888999
Q ss_pred HHHHHCCCCCCCCHHHHHHHHCCCEEEECCCCCCCC------------------------CCCCCEEEEECCCCCCCHHH
Q ss_conf 986411577877345787653263024027852001------------------------47884399974971453799
Q gi|254781018|r 163 GYIERLQHGKTGIIDSTTIVMGGIIYINPPQIIKNE------------------------TLVGEWWAINTGMPESSTGE 218 (337)
Q Consensus 163 ~~~e~~~~~~~sg~D~~~~~~gg~~~~~~~~~~~~~------------------------~~~~~~~~i~~~~~~~st~~ 218 (337)
+.+|+.+++.+||+|+++|+|||.+.|+..+..... ..+...+++..+....+|.+
T Consensus 149 ~~~E~~~~g~~sG~D~~~s~~GG~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~tg~~~~t~~ 228 (365)
T 3k17_A 149 ALSHLVVQGNGSCGDIASCMYGGWIAYTTFDQEWVKHRLAYKSLEWFMKEPWPMLQIETLEEPVPTFSVGWTGTPVSTGK 228 (365)
T ss_dssp HHHHHHHHSSCCSHHHHHHHHCSEEEEECCCHHHHHHHHTTSCHHHHHHSCCTTCEEEEECCCSSEEEEEECSCCCCHHH
T ss_pred HHHHHHHCCCCCHHHHHHHHCCCEEEEEECCCCCEEEECCCCCCCEEECCCCCHHHHHHHHHHHHCEEEEECCCCCCHHH
T ss_conf 99998744698602148887398399981784010221134663023237862355776541342006751699644399
Q ss_pred HHHHHHHHHCC-----CHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH------CCCCCHHHHHHHHHHHHCC
Q ss_conf 99999976412-----068999876548999999838721689999995999997------1899779999999998579
Q gi|254781018|r 219 CVSFVEQHFSQ-----SSIWSEFNAVTNEMMENIQKKDAEKTYKSVRVNQSLLES------IGVVPETVGKFIRCIENNG 287 (337)
Q Consensus 219 ~~~~~~~~~~~-----~~~~~~~~~i~~~~~~al~~~d~~~l~~~~~~~~~ll~~------l~vs~~~l~~l~~~~~~~g 287 (337)
.+..++..... ..++..+++++.++.++|+.+|++.++++|+++|.++++ ++|++|++++|++.+++.|
T Consensus 229 ~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~~~d~~~~g~lm~~~~~~l~~~~~~~~~~vs~~~l~~lv~~a~~~g 308 (365)
T 3k17_A 229 LVSQIHAFKQEDSKNYQHFLTRNNEIMKQIIQAFHTKDEELLYSSIKENRRILQELGTKAGVNIETSLLKELADSAENMG 308 (365)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHTCCCSCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCC
T ss_conf 99999986542648776578888788999999763168999999999999999962221587658999999999998679
Q ss_pred CEEEECCCCCCCCCEEEEEEEECCC-HHHHH---HHCCCEEEEEEECCCCEEE
Q ss_conf 8089507886788508999985799-79999---7459869999987997092
Q gi|254781018|r 288 GSAKIAGAGSIRGEKAGLVLVGGYN-PEKLS---SLYGYTCYKIKEDKNGTML 336 (337)
Q Consensus 288 ~~ak~sGAG~~~Gg~~~~~l~~~~~-~~~~~---~~~~~~~~~~~~~~~G~~i 336 (337)
+++|+|||| ||+|+++++++++ .+++. +..+++.+| +....+++
T Consensus 309 ~~ak~tGAG---~Ggc~~al~~~~~~~~~l~~~~~~~g~~~l~--~~~~~~~~ 356 (365)
T 3k17_A 309 GAGKSSGSG---GGDCGIAFSKTKELAEKLVNEWEKLGIKHLP--FHTGRVQI 356 (365)
T ss_dssp SEEEECTTC---SSSEEEEEESSHHHHHHHHHHHHHTTCEECC--CCBCCCEE
T ss_pred EEEEECCCC---CCCEEEEEECCHHHHHHHHHHHHHCCCEEEE--EEECCEEE
T ss_conf 089984606---5058999988889999999999987997621--26401351