Query gi|254781018|ref|YP_003065431.1| GHMP kinase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 337
No_of_seqs 143 out of 3344
Neff 9.3
Searched_HMMs 23785
Date Tue May 31 23:42:39 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781018.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1kvk_A MK, mevalonate kinase; 100.0 0 0 344.4 34.0 325 10-337 5-380 (395)
2 1kkh_A Mevalonate kinase; mixe 100.0 0 0 333.8 31.8 305 8-330 3-316 (317)
3 2a2c_A N-acetylgalactosamine k 100.0 0 0 332.3 29.4 301 2-317 47-441 (478)
4 1wuu_A Galactokinase; galactos 100.0 0 0 328.9 30.6 320 2-336 28-396 (399)
5 2hfs_A Mevalonate kinase, puta 100.0 0 0 326.2 30.3 278 10-312 13-300 (332)
6 1pie_A Galactokinase; galactos 100.0 0 0 323.9 30.8 318 2-336 39-415 (419)
7 3k17_A LIN0012 protein; protei 100.0 0 0 321.5 30.0 309 8-336 4-356 (365)
8 2x7i_A Mevalonate kinase; tran 100.0 0 0 328.4 21.9 289 10-328 6-305 (308)
9 3k85_A D-glycero-D-manno-hepto 100.0 0 0 330.2 18.3 307 10-336 3-338 (357)
10 2aj4_A Galactokinase; galactos 100.0 0 0 319.7 26.4 306 2-317 57-510 (548)
11 2cz9_A Probable galactokinase; 100.0 0 0 311.0 32.2 302 11-336 2-350 (350)
12 2pg9_A Phosphomevalonate kinas 100.0 0 0 313.7 29.7 295 10-330 3-332 (337)
13 2oi2_A Mevalonate kinase; enzy 100.0 0 0 314.9 26.8 260 11-311 6-269 (292)
14 3hul_A HSK, HK, homoserine kin 99.9 2.7E-25 1.1E-29 176.8 22.1 276 11-336 3-288 (298)
15 1h72_C HK, homoserine kinase; 99.9 7.9E-23 3.3E-27 161.2 17.7 286 10-336 2-295 (296)
16 2v8p_A 4-diphosphocytidyl-2-C- 99.9 2.2E-21 9.1E-26 152.2 22.6 258 8-329 2-271 (271)
17 2hk2_A Diphosphomevalonate dec 99.9 8.4E-19 3.5E-23 135.8 26.2 285 9-336 7-329 (331)
18 2ww4_A 4-diphosphocytidyl-2C-m 99.8 4.1E-19 1.7E-23 137.8 19.6 227 15-298 7-243 (283)
19 2gs8_A Mevalonate pyrophosphat 99.8 2.2E-15 9.3E-20 114.3 30.2 271 10-329 8-311 (317)
20 1uek_A 4-(cytidine 5'-diphosph 99.8 2.2E-17 9.4E-22 126.9 18.1 228 12-298 2-236 (275)
21 3lto_A Mevalonate diphosphate 99.7 8.4E-14 3.5E-18 104.3 24.9 277 10-319 2-303 (323)
22 1fi4_A Mevalonate 5-diphosphat 99.6 9.2E-12 3.9E-16 91.5 27.8 270 10-318 25-341 (416)
23 3f0n_A Mevalonate pyrophosphat 99.4 4E-09 1.7E-13 74.9 25.4 267 8-317 21-337 (414)
24 2hke_A Diphosphomevalonate dec 99.3 2.6E-08 1.1E-12 69.8 27.7 260 10-318 5-312 (380)
25 3k4g_A DNA-directed RNA polyme 62.7 6.1 0.00026 17.0 4.1 56 238-293 18-76 (86)
26 1z3e_B DNA-directed RNA polyme 62.6 6.2 0.00026 17.0 3.8 51 238-288 15-66 (73)
27 3lu0_A DNA-directed RNA polyme 52.9 2.3 9.8E-05 19.7 0.0 55 239-293 262-319 (329)
28 1coo_A RNA polymerase alpha su 51.4 5.5 0.00023 17.3 1.7 56 238-293 30-88 (98)
29 3gfk_B DNA-directed RNA polyme 46.4 8.1 0.00034 16.2 1.9 51 238-288 22-73 (79)
30 2a6h_A DNA-directed RNA polyme 35.3 6.4 0.00027 16.9 0.0 51 238-288 260-311 (315)
31 3kp1_E D-ornithine aminomutase 35.2 17 0.00071 14.2 3.9 58 231-296 25-82 (121)
32 2g5c_A Prephenate dehydrogenas 24.9 25 0.0011 13.1 5.2 39 231-269 243-281 (281)
33 3hh1_A Tetrapyrrole methylase 23.7 27 0.0011 13.0 1.9 23 274-296 67-89 (117)
34 3dzb_A Prephenate dehydrogenas 22.6 28 0.0012 12.9 5.5 36 234-269 253-288 (317)
35 3ggo_A Prephenate dehydrogenas 22.4 28 0.0012 12.8 5.2 38 232-269 276-313 (314)
No 1
>1kvk_A MK, mevalonate kinase; RMK, ATP, GHMP, transferase; HET: ATP; 2.40A {Rattus norvegicus} SCOP: d.14.1.5 d.58.26.3 PDB: 2r42_A* 2r3v_A
Probab=100.00 E-value=0 Score=344.43 Aligned_cols=325 Identities=18% Similarity=0.181 Sum_probs=244.5
Q ss_pred CEEEECCCEEEEECCCEEECCCEEEEEEECCCEEEEEEECCCCEEEEEECCCCCCC-CCCCCCCCCC-C---CCCCCCCC
Q ss_conf 08998581799974454407954899876672799999848982999955766675-3210012333-3---43321111
Q gi|254781018|r 10 HAHSIAPAKVILSGEYSSLYGASALAVAITFYLRALLTTIEPSLIRIINSQTIEYS-FEACRLLGHQ-I---DQRHRDFI 84 (337)
Q Consensus 10 ~~~~~APGKi~L~GEh~v~~G~~ai~~aI~~~~~v~i~~~~~~~~~~~s~~~~~~~-~~~~~~~~~~-~---~~~~~~~~ 84 (337)
-.+++|||||+|+|||+||+|++||++|||+|+++.+++++++.+++.+....... +......... . ...+....
T Consensus 5 ~~~vsAPGkv~L~GEH~d~~G~~vl~~AI~~~~~v~v~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (395)
T 1kvk_A 5 VLLVSAPGKVILHGEHAVVHGKVALAVALNLRTFLVLRPQSNGKVSLNLPNVGIKQVWDVATLQLLDTGFLEQGDVPAPT 84 (395)
T ss_dssp CEEEEEEEEEEEECTTGGGGTCCEEEEEEEEEEEEEEEECSSSEEEEEETTTTEEEEEEHHHHHTSCC------------
T ss_pred EEEEEEEEEEEEEECCEEECCCCEEEEEECCCEEEEEEECCCCEEEEEECCCCCCCEECCCCCCCCCCCCCCCCCCCCCH
T ss_conf 29999755999981773666997799996265899999988987999966888651212110000123433345666530
Q ss_pred CC-------------CCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCC
Q ss_conf 12-------------21033477788899999875115667887699998055410389853037899999999981877
Q gi|254781018|r 85 AK-------------KIPITSVLTHPNDLILYIFNRHLPHISCGISLDLHSTIPIGSGFGSSSAIISALSLALSSITHQP 151 (337)
Q Consensus 85 ~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~i~s~iP~~~GLGSSaA~~va~~~al~~~~~~~ 151 (337)
.. ............................|+++.++|++|.++|||||||++||++.+++.++++.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~i~S~iP~g~GLgSSaA~~va~~~al~~~~~~~ 164 (395)
T 1kvk_A 85 LEQLEKLKKVAGLPRDCVGNEGLSLLAFLYLYLAICRKQRTLPSLDIMVWSELPPGAGLGSSAAYSVCVAAALLTACEEV 164 (395)
T ss_dssp ----CHHHHHHTSSCCCSCTTHHHHHHHHHHHHHHHTTSSSCCCEEEEEEESSCTTSSSCHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHCCCCHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCC
T ss_conf 56788765430462010121103678899999999853788888699996447732476512899999999999984544
Q ss_pred CCC--------------HHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCEEEECCCCCCCCCCCCCEEEEECCCCCCCHH
Q ss_conf 540--------------258999999864115778773457876532630240278520014788439997497145379
Q gi|254781018|r 152 FCN--------------KEKLIAETGYIERLQHGKTGIIDSTTIVMGGIIYINPPQIIKNETLVGEWWAINTGMPESSTG 217 (337)
Q Consensus 152 ~~~--------------~~~~~~~a~~~e~~~~~~~sg~D~~~~~~gg~~~~~~~~~~~~~~~~~~~~~i~~~~~~~st~ 217 (337)
... .+++.++++.+|+.++|.+||+|++++.+|+.+.++..+.......+...+++..+....+|.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~i~~la~~~E~~~~g~~~G~d~~~~~~g~~~~~~~~~~~~~~~~~~~~l~l~~t~~~~~t~ 244 (395)
T 1kvk_A 165 TNPLKDRGSIGSWPEEDLKSINKWAYEGERVIHGNPSGVDNSVSTWGGALRYQQGKMSSLKRLPALQILLTNTKVPRSTK 244 (395)
T ss_dssp CCGGGGCCSEECCCHHHHHHHHHHHHHHHHHHHSSCCSHHHHHHHHCSEEEESSSCEEECSCCCCEEEEEEECCCCCCHH
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCEEEEECCCCCCCCCCCCCCEEEECCCCCCCHH
T ss_conf 44310000001111047999999999999886588850357787558837851244323456765205783268765027
Q ss_pred HHHHHHHHHHCCC-----HHHHHHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 9999999764120-----6899987654899999983-------872168999999599999718997799999999985
Q gi|254781018|r 218 ECVSFVEQHFSQS-----SIWSEFNAVTNEMMENIQK-------KDAEKTYKSVRVNQSLLESIGVVPETVGKFIRCIEN 285 (337)
Q Consensus 218 ~~~~~~~~~~~~~-----~~~~~~~~i~~~~~~al~~-------~d~~~l~~~~~~~~~ll~~l~vs~~~l~~l~~~~~~ 285 (337)
+.+..++...... ..++++.+++.++.++++. +|++.++++|+++|.++++++||+|++|+|++.+++
T Consensus 245 ~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~d~~~lg~lm~~~~~~l~~l~vs~peld~l~~~a~~ 324 (395)
T 1kvk_A 245 ALVAGVRSRLIKFPEIMAPLLTSIDAISLECERVLGEMAAAPVPEQYLVLEELMDMNQHHLNALGVGHASLDQLCQVTAA 324 (395)
T ss_dssp HHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 88999999998646679999999999999999999988776651134558999998099887628998999999999985
Q ss_pred CCCEEEECCCCCCCCCEEEEEEEECCCHHHH-H------HHCCCEEEEEEECCCCEEEC
Q ss_conf 7980895078867885089999857997999-9------74598699999879970929
Q gi|254781018|r 286 NGGSAKIAGAGSIRGEKAGLVLVGGYNPEKL-S------SLYGYTCYKIKEDKNGTMLA 337 (337)
Q Consensus 286 ~g~~ak~sGAG~~~Gg~~~~~l~~~~~~~~~-~------~~~~~~~~~~~~~~~G~~i~ 337 (337)
.|+|+|+|||| ||+|.++|.++.+.++. . +..+++++.++++.+|++|.
T Consensus 325 ~g~gaklsGAG---~GG~~ial~~~~~~~~~~~~~~~~~~~~g~~~~~~~i~~~Gv~i~ 380 (395)
T 1kvk_A 325 HGLHSKLTGAG---GGGCGITLLKPGLERAKVEAAKQALTGCGFDCWETSIGAPGVSMH 380 (395)
T ss_dssp TTCEEEECSSC---SSSEEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEEESCCCSEEE
T ss_pred CCCEEEEECCC---CCCEEEEEECCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCEEEE
T ss_conf 79689983667---756899997785049999999999997699699987289937995
No 2
>1kkh_A Mevalonate kinase; mixed beta sheet, phosphate-binding loop, beta-alpha-beta, transferase; 2.40A {Methanocaldococcus jannaschii} SCOP: d.14.1.5 d.58.26.3 PDB: 1vis_A
Probab=100.00 E-value=0 Score=333.77 Aligned_cols=305 Identities=21% Similarity=0.225 Sum_probs=235.1
Q ss_pred CCCEEEECCCEEEEECCCEEECCCEEEEEEECCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 96089985817999744544079548998766727999998489829999557666753210012333343321111122
Q gi|254781018|r 8 TPHAHSIAPAKVILSGEYSSLYGASALAVAITFYLRALLTTIEPSLIRIINSQTIEYSFEACRLLGHQIDQRHRDFIAKK 87 (337)
Q Consensus 8 ~p~~~~~APGKi~L~GEh~v~~G~~ai~~aI~~~~~v~i~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (337)
.+.++++|||||+|+|||+||+|++||++|||++++++++++++..+++.+............ .. ....
T Consensus 3 ~~~~~v~aPgki~L~GEh~v~~G~~al~~aI~~~~~v~i~~~~~~~i~i~~~~~~~~~~~~~~----~~-------~~~~ 71 (317)
T 1kkh_A 3 GSHMIIETPSKVILFGEHAVVYGYRAISMAIDLTSTIEIKETQEDEIILNLNDLNKSLGLNLN----EI-------KNIN 71 (317)
T ss_dssp TCCEEEEEEEEEEEECTTGGGGTCCEEEEEEEEEEEEEEEECCSSEEEEEETTTTEEEEEETT----TG-------GGCC
T ss_pred CCEEEEEEEEEEEEECCCCEECCCCEEEEEECCEEEEEEEECCCCEEEEEECCCCCCEEEEHH----HC-------CCCC
T ss_conf 983999931099998167134799889999626599999998899799997478862688601----13-------2358
Q ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q ss_conf 10334777888999998751156678876999980554103898530378999999999818775402589999998641
Q gi|254781018|r 88 IPITSVLTHPNDLILYIFNRHLPHISCGISLDLHSTIPIGSGFGSSSAIISALSLALSSITHQPFCNKEKLIAETGYIER 167 (337)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~i~s~iP~~~GLGSSaA~~va~~~al~~~~~~~~~~~~~~~~~a~~~e~ 167 (337)
.....+..+....+.............|+++.++|+||.++|||||||++||++.+++++++++++ ++++.++|+.+|+
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~i~s~iP~g~GLGSSsA~~va~~~al~~~~~~~l~-~~el~~la~~~E~ 150 (317)
T 1kkh_A 72 PNNFGDFKYCLCAIKNTLDYLNIEPKTGFKINISSKIPISCGLGSSASITIGTIKAVSGFYNKELK-DDEIAKLGYMVEK 150 (317)
T ss_dssp GGGSGGGHHHHHHHHHHHHHTTCCCCSCEEEEEEECSCSSSSSCHHHHHHHHHHHHHHHTTTCCCC-HHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHH
T ss_conf 554422899999999999982878898669999678988778745689999998876444101588-7887766688986
Q ss_pred CCCCCCCCHHHHHHHHCCCEEEECCCCCCCC------CCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 1577877345787653263024027852001------4788439997497145379999999976412068999876548
Q gi|254781018|r 168 LQHGKTGIIDSTTIVMGGIIYINPPQIIKNE------TLVGEWWAINTGMPESSTGECVSFVEQHFSQSSIWSEFNAVTN 241 (337)
Q Consensus 168 ~~~~~~sg~D~~~~~~gg~~~~~~~~~~~~~------~~~~~~~~i~~~~~~~st~~~~~~~~~~~~~~~~~~~~~~i~~ 241 (337)
.+++.+|++|++++.|||+++++..+..... .....++++.++....+|.+.+..+++.....+.+.++. .
T Consensus 151 ~~~~~~s~~D~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~---~ 227 (317)
T 1kkh_A 151 EIQGKASITDTSTITYKGILEIKNNKFRKIKGEFEEFLKNCKFLIVYAEKRKKKTAELVNEVAKIENKDEIFKEID---K 227 (317)
T ss_dssp HHSSSCCSHHHHHHHHCSEEEESSSCEEEECHHHHHHHHTCCEEEEEEECCCSCHHHHHHHHHTCTTHHHHHHHHH---H
T ss_pred HCCCCCCCCCHHHHCCCCEEEEECCCCEEECCCHHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH---H
T ss_conf 2288888763034305865996179613611202001111222200206743142989998887766778999988---8
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCEEEECCCCCCCCCEEEEEEEECCCHHHHH-HH-
Q ss_conf 9999998387216899999959999971899779999999998579808950788678850899998579979999-74-
Q gi|254781018|r 242 EMMENIQKKDAEKTYKSVRVNQSLLESIGVVPETVGKFIRCIENNGGSAKIAGAGSIRGEKAGLVLVGGYNPEKLS-SL- 319 (337)
Q Consensus 242 ~~~~al~~~d~~~l~~~~~~~~~ll~~l~vs~~~l~~l~~~~~~~g~~ak~sGAG~~~Gg~~~~~l~~~~~~~~~~-~~- 319 (337)
.+.++|+.+|++.++++|+++|.+++++++++|+++.|++.+++.|+++|+|||| ||+|++++....+.+.+. ++
T Consensus 228 ~~~eal~~~d~~~l~~~m~~~~~~~~~~~i~~~~l~~l~~~~~~~g~~ak~sGaG---~Gg~~~~~~~~~~~~~~~~~~~ 304 (317)
T 1kkh_A 228 VIDEALKIKNKEDFGKLMTKNHELLKKLNISTPKLDRIVDIGNRFGFGAKLTGAG---GGGCVIILVNEEKEKELLKELN 304 (317)
T ss_dssp HHHHHHHCCSHHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHSSEEEECSSS---SSEEEEEECCGGGHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCEEEEECCC---CCCEEEEEECHHHHHHHHHHHH
T ss_conf 7888765000578999999979999872899889999999998379589980788---6388999988157999999999
Q ss_pred -CCCEEEEEEEC
Q ss_conf -59869999987
Q gi|254781018|r 320 -YGYTCYKIKED 330 (337)
Q Consensus 320 -~~~~~~~~~~~ 330 (337)
.+++++.+++.
T Consensus 305 ~~~~~~~~~~~~ 316 (317)
T 1kkh_A 305 KEDVRIFNCRMM 316 (317)
T ss_dssp TSSCEEEEECBC
T ss_pred HCCCEEEEEEEC
T ss_conf 749839999944
No 3
>2a2c_A N-acetylgalactosamine kinase; galactokinase, , transferase; HET: NG1 ADP; 1.65A {Homo sapiens} PDB: 2a2d_A*
Probab=100.00 E-value=0 Score=332.27 Aligned_cols=301 Identities=14% Similarity=0.103 Sum_probs=216.0
Q ss_pred CCCCCCCCCEEEECCCEEEEECCCEEECCCEEEEEEECCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 54357996089985817999744544079548998766727999998489829999557666753210012333343321
Q gi|254781018|r 2 KQQTSQTPHAHSIAPAKVILSGEYSSLYGASALAVAITFYLRALLTTIEPSLIRIINSQTIEYSFEACRLLGHQIDQRHR 81 (337)
Q Consensus 2 ~~~~~~~p~~~~~APGKi~L~GEh~v~~G~~ai~~aI~~~~~v~i~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 81 (337)
++.|++.|+++++|||||+|||||+||+|++||++||++++++.+++++++.+++.+........ .... +.
T Consensus 47 ~~~fg~~P~~~~~APGRV~L~GEH~DY~gg~Vl~~AI~~~~~v~v~~~~d~~v~l~s~~~~~~~~---~~~~---~~--- 117 (478)
T 2a2c_A 47 NSKFGSIPKFYVRAPGRVNIIGEHIDYCGYSVLPMAVEQDVLIAVEPVKTYALQLANTNPLYPDF---STSA---NN--- 117 (478)
T ss_dssp HHHHSSCCSEEEEEEEEEEEECTTCGGGTCCBEEEEEEEEEEEEEEECSSSCEEEEESSTTSCCE---EECC---CC---
T ss_pred HHHHCCCCCEEEECCCCEEEECCCCEECCCEEEEEEHHHCEEEEEEECCCCEEEEEECCCCCCCE---ECCC---CC---
T ss_conf 99878998699988812785058710399878904861378999998789879999889887742---2114---33---
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 11112210334777888999998751156678876999980554103898530378999999999818775402589999
Q gi|254781018|r 82 DFIAKKIPITSVLTHPNDLILYIFNRHLPHISCGISLDLHSTIPIGSGFGSSSAIISALSLALSSITHQPFCNKEKLIAE 161 (337)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~i~s~iP~~~GLGSSaA~~va~~~al~~~~~~~~~~~~~~~~~ 161 (337)
.........|.+|....+..+..........|+++.++|+||.++|||||||++||++.++..+++..++ ...+.++
T Consensus 118 --~~~~~~~~~w~~y~~~~~~~~~~~~~~~~~~G~~i~i~S~iP~gaGLsSSAAl~vA~~~al~~~~~~~~~-~~~~~~~ 194 (478)
T 2a2c_A 118 --IQIDKTKPLWHNYFLCGLKGIQEHFGLSNLTGMNCLVDGNIPPSSGLSSSSALVCCAGLVTLTVLGRNLS-KVELAEI 194 (478)
T ss_dssp --C--CCSSCCHHHHHHHHHHHHHHHTTCCSCCCEEEEEEECSCTTSSSCHHHHHHHHHHHHHHHHHTCCCC-HHHHHHH
T ss_pred --CCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCC-HHHHHHH
T ss_conf --4556566537889999999999970888888769999467788777676689999999999986256877-8999998
Q ss_pred HHHHHHCCCCCCCCHHHHHHHHCCC---EEEECCCCC--CCCCCCCC-EEEEECCCCCCCHH------------------
Q ss_conf 9986411577877345787653263---024027852--00147884-39997497145379------------------
Q gi|254781018|r 162 TGYIERLQHGKTGIIDSTTIVMGGI---IYINPPQII--KNETLVGE-WWAINTGMPESSTG------------------ 217 (337)
Q Consensus 162 a~~~e~~~~~~~sg~D~~~~~~gg~---~~~~~~~~~--~~~~~~~~-~~~i~~~~~~~st~------------------ 217 (337)
+..+|+.++.++|+|||+++++|+. ++++..+.. ....+... ++++.++.......
T Consensus 195 ~~~~E~~~g~~~G~mDq~as~~g~~~~~l~~d~~~~~~~~~~~p~~~~~~i~~s~~~~~~~~~~~y~~r~~e~~~a~~~l 274 (478)
T 2a2c_A 195 CAKSERYIGTEGGGMDQSISFLAEEGTAKLIEFSPLRATDVKLPSGAVFVIANSCVEMNKAATSHFNIRVMECRLAAKLL 274 (478)
T ss_dssp HHHHHGGGTCCCCSHHHHHHHHCBTTBEEEEETTTTEEEEECCCTTEEEEEEECCCCCCGGGSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCCCHHHHHHHHCCCCEEEECCCCCCCEEECCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 78998743898740889999706573899734788623435579886389983476334456531556699999999997
Q ss_pred --------------------------HHHHHHHHHHC---------------------------------------CCHH
Q ss_conf --------------------------99999997641---------------------------------------2068
Q gi|254781018|r 218 --------------------------ECVSFVEQHFS---------------------------------------QSSI 232 (337)
Q Consensus 218 --------------------------~~~~~~~~~~~---------------------------------------~~~~ 232 (337)
+....+..... +...
T Consensus 275 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ei~~~~~~~~~e~~~~~l~~~~~~~~~~~l~~Ra~h 354 (478)
T 2a2c_A 275 AKYKSLQWDKVLRLEEVQAKLGISLEEMLLVTEDALHPEPYNPEEICRCLGISLEELRTQILSPNTQDVLIFKLYQRAKH 354 (478)
T ss_dssp HHHTTCCTTTCCCHHHHHHHHTCCHHHHHHHHHHHSCSSCBCHHHHHHHHTCCHHHHHHHTSCGGGTTCCCBCHHHHHHH
T ss_pred HHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHCCCHHHHHHHHH
T ss_conf 02014442022037887754078899999998864032547899999877665888876531302332010678899999
Q ss_pred HHHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHHHH-CCCCCHHHHHHHHHHHHCCC-EEEECCCCCCCCCEEEEEE
Q ss_conf 9998765489999998---38721689999995999997-18997799999999985798-0895078867885089999
Q gi|254781018|r 233 WSEFNAVTNEMMENIQ---KKDAEKTYKSVRVNQSLLES-IGVVPETVGKFIRCIENNGG-SAKIAGAGSIRGEKAGLVL 307 (337)
Q Consensus 233 ~~~~~~i~~~~~~al~---~~d~~~l~~~~~~~~~ll~~-l~vs~~~l~~l~~~~~~~g~-~ak~sGAG~~~Gg~~~~~l 307 (337)
+-...+++.++.++++ .+|++.+|++|++||..+++ ++||+|+||.|++++++.|+ |+|||||| ||+|.+.|
T Consensus 355 v~~E~~Rv~~~~~~l~~~~~~dl~~lG~Lmn~sh~sLr~~y~VS~peLd~lv~~a~~~Ga~GaKlTGAG---~GGc~iaL 431 (478)
T 2a2c_A 355 VYSEAARVLQFKKICEEAPENMVQLLGELMNQSHMSCRDMYECSCPELDQLVDICRKFGAQGSRLTGAG---WGGCTVSM 431 (478)
T ss_dssp HHHHHHHHHHHHHHHHHCCTTHHHHHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHHTTCSEEEECTTC---SSSEEEEE
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCEEEEECCC---CCEEEEEE
T ss_conf 999999999999999856300799999999999999987217998999999999997699689981588---61279999
Q ss_pred EECCCHHHHH
Q ss_conf 8579979999
Q gi|254781018|r 308 VGGYNPEKLS 317 (337)
Q Consensus 308 ~~~~~~~~~~ 317 (337)
.+....+++.
T Consensus 432 v~~~~~~~~~ 441 (478)
T 2a2c_A 432 VPADKLPSFL 441 (478)
T ss_dssp EEGGGHHHHH
T ss_pred ECHHHHHHHH
T ss_conf 6467899999
No 4
>1wuu_A Galactokinase; galactosemia, GHMP superfamily, transferase; HET: GLA ANP; 2.50A {Homo sapiens} SCOP: d.14.1.5 d.58.26.7
Probab=100.00 E-value=0 Score=328.95 Aligned_cols=320 Identities=13% Similarity=0.070 Sum_probs=216.0
Q ss_pred CCCCCCCCCEEEECCCEEEEECCCEEECCCEEEEEEECCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 54357996089985817999744544079548998766727999998489829999557666753210012333343321
Q gi|254781018|r 2 KQQTSQTPHAHSIAPAKVILSGEYSSLYGASALAVAITFYLRALLTTIEPSLIRIINSQTIEYSFEACRLLGHQIDQRHR 81 (337)
Q Consensus 2 ~~~~~~~p~~~~~APGKi~L~GEh~v~~G~~ai~~aI~~~~~v~i~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 81 (337)
++.|+++|+++++|||||+|+|||+||||++||++||++|+++.+++++++.+++.+.....................
T Consensus 28 ~~~~g~~p~~~~sAPGkviL~GEHavv~G~~ala~AI~l~t~v~~~~~~d~~i~v~s~~~~~~~~~~~~~~~~~~~~~-- 105 (399)
T 1wuu_A 28 REEFGAEPELAVSAPGRVNLIGEHTDYNQGLVLPMALELMTVLVGSPRKDGLVSLLTTSEGADEPQRLQFPLPTAQRS-- 105 (399)
T ss_dssp HHHHSSCCSEEEEEEEEEEEECTTCGGGTCEEEEEEEEEEEEEEEEEETTCEEEEEECCSSSCSCSEEEEECCCSSCC--
T ss_pred HHHHCCCCCEEEEECEEEEEECCCHHCCCCEEEEEEHHHCEEEEEEECCCCEEEEEECCCCCCCCCEEEEECCCCCCC--
T ss_conf 998789998999913499997186215897768268500689999998999799998778887640787414410022--
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 11112210334777888999998751156678876999980554103898530378999999999818775402589999
Q gi|254781018|r 82 DFIAKKIPITSVLTHPNDLILYIFNRHLPHISCGISLDLHSTIPIGSGFGSSSAIISALSLALSSITHQPFCNKEKLIAE 161 (337)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~i~s~iP~~~GLGSSaA~~va~~~al~~~~~~~~~~~~~~~~~ 161 (337)
.......|..+.. ............|+++.+.|++|.++|||||||++||++.+++.+++.+++ ...+.++
T Consensus 106 ----~~~~~~~~~~~~~----~~~~~~~~~~~~g~~i~i~S~iP~gaGLgSSAA~~Va~~~al~~~~~~~~~-~~~~~~~ 176 (399)
T 1wuu_A 106 ----LEPGTPRWANYVK----GVIQYYPAAPLPGFSAVVVSSVPLGGGLSSSASLEVATYTFLQQLCPDSGT-IAARAQV 176 (399)
T ss_dssp ----CCCCSSGGGHHHH----HHHHHCSSSCCCEEEEEEEECSCTTSSSCHHHHHHHHHHHHHHHHSCCCSC-HHHHHHH
T ss_pred ----CCCCCCHHHHHHH----HHHHHHHHCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCC-HHHHHHH
T ss_conf ----4656521567778----999986404678659999777786567451168999999999986225886-8888899
Q ss_pred HHHHHHCCCCCCCC-HHHHHHHHCCCEE---EECCC--CCCCCCCCC-CEEEEECCCCCCCHHHHHHHHHHH--------
Q ss_conf 99864115778773-4578765326302---40278--520014788-439997497145379999999976--------
Q gi|254781018|r 162 TGYIERLQHGKTGI-IDSTTIVMGGIIY---INPPQ--IIKNETLVG-EWWAINTGMPESSTGECVSFVEQH-------- 226 (337)
Q Consensus 162 a~~~e~~~~~~~sg-~D~~~~~~gg~~~---~~~~~--~~~~~~~~~-~~~~i~~~~~~~st~~~~~~~~~~-------- 226 (337)
+...|..+.|.++| +|++++.+++... .+... ......... ..+++..+....++.......+..
T Consensus 177 a~~~e~~~~G~~~g~~dq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~R~~e~~~~~~~ 256 (399)
T 1wuu_A 177 CQQAEHSFAGMPCGIMDQFISLMGQKGHALLIDCRSLETSLVPLSDPKLAVLITNSNVRHSLASSEYPVRRRQCEEVARA 256 (399)
T ss_dssp HHHHHHHHTCCCCCSHHHHHHHHCCTTEEEEEETTTCCEEEEECCCSSEEEEEEEEEEEC--CTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCCCCHHHHHHCCCCEEEEECCCCCCEEEECCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 99999976087766531667753367658873168763343014666348999727852024302578889999999998
Q ss_pred -------------------H------CCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HHHHCCCCCHHHHHHH
Q ss_conf -------------------4------1206899987654899999983872168999999599-9997189977999999
Q gi|254781018|r 227 -------------------F------SQSSIWSEFNAVTNEMMENIQKKDAEKTYKSVRVNQS-LLESIGVVPETVGKFI 280 (337)
Q Consensus 227 -------------------~------~~~~~~~~~~~i~~~~~~al~~~d~~~l~~~~~~~~~-ll~~l~vs~~~l~~l~ 280 (337)
. .+.........++..+.++++.+|++.++++|+++|. +++.++||+|+||+|+
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ra~~~~~e~~~~~~~~~al~~~d~~~lG~Lm~~~h~~L~~~lgVS~p~Ld~lv 336 (399)
T 1wuu_A 257 LGKESLREVQLEELEAARDLVSKEGFRRARHVVGEIRRTAQAAAALRRGDYRAFGRLMVESHRSLRDDYEVSCPELDQLV 336 (399)
T ss_dssp TTCSSTTSCCHHHHTTGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTSCCCCHHHHHHH
T ss_pred HCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 37100122449999998752044789999888778888888998775389999999999999999986479979999999
Q ss_pred HHHHHC-CC-EEEECCCCCCCCCEEEEEEEECCCHHHH----HHHCCC--EEEEEEECCCCEEE
Q ss_conf 999857-98-0895078867885089999857997999----974598--69999987997092
Q gi|254781018|r 281 RCIENN-GG-SAKIAGAGSIRGEKAGLVLVGGYNPEKL----SSLYGY--TCYKIKEDKNGTML 336 (337)
Q Consensus 281 ~~~~~~-g~-~ak~sGAG~~~Gg~~~~~l~~~~~~~~~----~~~~~~--~~~~~~~~~~G~~i 336 (337)
+.+++. |+ |+|+|||| ||+|+++|.+.+..++. .+.+++ ..+.+. -.+|++|
T Consensus 337 ~~a~~~~Ga~gaKltGAG---gGGc~iaL~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~Ga~v 396 (399)
T 1wuu_A 337 EAALAVPGVYGSRMTGGG---FGGCTVTLLEASAAPHAMRHIQEHYGGTATFYLSQ-AADGAKV 396 (399)
T ss_dssp HHHHTSTTEEEEEECSSC---SEEEEEEEEEGGGHHHHHHHHHHHCSSCCEEEEEC-CCCCSEE
T ss_pred HHHHHCCCCEEEEECCCC---CCEEEEEEECHHHHHHHHHHHHHHHCCCCEEEEEE-CCCCCEE
T ss_conf 999874997398973577---76399999766789999999999858987299997-6898278
No 5
>2hfs_A Mevalonate kinase, putative; GHMP kinase, trypanosomatid parasite, transferase; 1.75A {Leishmania major} PDB: 2hfu_A*
Probab=100.00 E-value=0 Score=326.16 Aligned_cols=278 Identities=19% Similarity=0.205 Sum_probs=213.0
Q ss_pred CEEEECCCEEEEECCCEEECCCEEEEEEECCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 08998581799974454407954899876672799999848982999955766675321001233334332111112210
Q gi|254781018|r 10 HAHSIAPAKVILSGEYSSLYGASALAVAITFYLRALLTTIEPSLIRIINSQTIEYSFEACRLLGHQIDQRHRDFIAKKIP 89 (337)
Q Consensus 10 ~~~~~APGKi~L~GEh~v~~G~~ai~~aI~~~~~v~i~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (337)
-...+|||||+|+|||+||||++||++|||+|++++++++++............... + ...
T Consensus 13 ~~~~~~~GKv~L~GEhavv~G~~al~~AI~~~~~v~i~~~~~~~~~~~~~~~~~~~~----------------~---~~~ 73 (332)
T 2hfs_A 13 TGKNIGYGKVILFGEHFVVHGAEAIVAGISEYTECRLEINPGVPGLQVDDQRPAIPG----------------Y---IAQ 73 (332)
T ss_dssp CSCCEEEEEEEEECTTGGGGTCCEEEEEEEEEEEEEEEEETTCCSEEEEECCCCCTT----------------H---HHH
T ss_pred CCCEEEEEEEEEEECCEEECCCCEEEEEEECCEEEEEEECCCCCCEEEECCCCCCCC----------------C---CCC
T ss_conf 774365369999935712359768999930707999998689985697457766754----------------3---122
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 33477788899999875115667887699998055410389853037899999999981877540258999999864115
Q gi|254781018|r 90 ITSVLTHPNDLILYIFNRHLPHISCGISLDLHSTIPIGSGFGSSSAIISALSLALSSITHQPFCNKEKLIAETGYIERLQ 169 (337)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~i~s~iP~~~GLGSSaA~~va~~~al~~~~~~~~~~~~~~~~~a~~~e~~~ 169 (337)
...+.......+...+ .......|+++.++|+||.++|||||||++||++.+++++++.+++ ++++.++|..+|...
T Consensus 74 ~~~~~~~~~~~v~~~~--~~~~~~~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~~~~~~ls-~~el~~~A~~~E~~~ 150 (332)
T 2hfs_A 74 KRDEQIKAHQLVLDHL--KVDLSGDGLKMFIGGPLVPSSGIGASASDVVAFSRALSELYQLNLT-DEEVNLSAFVGEGGY 150 (332)
T ss_dssp HHHHHHHHHHHHHHHT--TBCCSSSEEEEEEECSCCCCTTSCHHHHHHHHHHHHHHHHHTCCCC-HHHHHHHHHHHGGGS
T ss_pred CCHHHHHHHHHHHHHH--HCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHH
T ss_conf 3336779999999997--3137899879999479987778660889999999999877750589-999999999998751
Q ss_pred CCCCCCHHHHHHHHCCCEEEECCCCC----CCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCC-----CHHHHHHHHHH
Q ss_conf 77877345787653263024027852----0014788439997497145379999999976412-----06899987654
Q gi|254781018|r 170 HGKTGIIDSTTIVMGGIIYINPPQII----KNETLVGEWWAINTGMPESSTGECVSFVEQHFSQ-----SSIWSEFNAVT 240 (337)
Q Consensus 170 ~~~~sg~D~~~~~~gg~~~~~~~~~~----~~~~~~~~~~~i~~~~~~~st~~~~~~~~~~~~~-----~~~~~~~~~i~ 240 (337)
++.+||+|+++|.|||++.++..+.. .+...+...+++..+....+|.+.+..++....+ ...++.+.+++
T Consensus 151 ~g~~sG~D~~as~~Gg~~~~~~~~~~~~~~~~~~~~~~~l~l~~tg~~~~T~~~~~~~~~~~~~~~~~~~~~~~~i~~i~ 230 (332)
T 2hfs_A 151 HGTPSGADNTAATYGGLILYRRQNGKSVFKPIAFQQRLYLVVVGTGINASTAKVVNDVHKMKQQQPVQFKRLYDNYTHIV 230 (332)
T ss_dssp SSCCCSHHHHHHHHCEEEEEEECSSSEEEEEECCCSCEEEEEEECSCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHCCCEEEEEECCCCEEEEECCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_conf 58987643789976986999957995799984555514799981897622499997644555534277776666789999
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCC-EEEECCCCCCCCCEEEEEEEECCC
Q ss_conf 899999983872168999999599999718997799999999985798-089507886788508999985799
Q gi|254781018|r 241 NEMMENIQKKDAEKTYKSVRVNQSLLESIGVVPETVGKFIRCIENNGG-SAKIAGAGSIRGEKAGLVLVGGYN 312 (337)
Q Consensus 241 ~~~~~al~~~d~~~l~~~~~~~~~ll~~l~vs~~~l~~l~~~~~~~g~-~ak~sGAG~~~Gg~~~~~l~~~~~ 312 (337)
.++.++++.+|++.++++|+++|.++++++||+|++++|++.+++.|+ |+|||||| ||+|+++|....+
T Consensus 231 ~~~~~al~~~~~~~lg~lm~~~~~~l~~l~vs~p~l~~l~~~a~~~GalgaklsGaG---~Gg~~ial~~~~~ 300 (332)
T 2hfs_A 231 SQAREALQKGDLQRLGQLMNANHDLCRQIDVSCRELESIVQTCRTYGALGAKLSGTG---RGGIAVALAASSD 300 (332)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTTCSEEEEESSC---SSSEEEEEESSHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCEEEECCCC---CCCEEEEEECCHH
T ss_conf 999987750004567899999999998538998899999999997899489992789---8664999987878
No 6
>1pie_A Galactokinase; galactose, galactosemia, transferase; HET: GLA; 2.10A {Lactococcus lactis} SCOP: d.14.1.5 d.58.26.7
Probab=100.00 E-value=0 Score=323.89 Aligned_cols=318 Identities=16% Similarity=0.148 Sum_probs=220.2
Q ss_pred CCCCCCCCCE-EEECCCEEEEECCCEEECCCEEEEEEECCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 5435799608-998581799974454407954899876672799999848982999955766675321001233334332
Q gi|254781018|r 2 KQQTSQTPHA-HSIAPAKVILSGEYSSLYGASALAVAITFYLRALLTTIEPSLIRIINSQTIEYSFEACRLLGHQIDQRH 80 (337)
Q Consensus 2 ~~~~~~~p~~-~~~APGKi~L~GEh~v~~G~~ai~~aI~~~~~v~i~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 80 (337)
.+.|++.|++ +++|||||+|+|||+||+|++||++||++++++.+++++++.+++.+..+........+ .+..
T Consensus 39 ~~~fg~~~~~~~~~APGRv~L~GEH~Dy~Gg~vl~~AI~~~~~v~v~~~~d~~i~i~s~~~~~~~~~~~~-----~~~~- 112 (419)
T 1pie_A 39 AEVFGDTKEVEYFFSPGRINLIGEHTDYNGGYVFPASITIGTTGLARLREDKKVKLYSENFPKLGVIEFD-----LDEV- 112 (419)
T ss_dssp HHHHSCCCSCEEEEEEEEEEEECCSCTTTTCEEEEEEEEEEEEEEEEECSSSEEEEEETTCGGGCCEEEE-----TTCT-
T ss_pred HHHHCCCCCCEEEECCCEEEEECCCEEECCCCEEEEEHHHCEEEEEEECCCCEEEEEECCCCCCEEEEEC-----CCCC-
T ss_conf 9984899871699800138996287357897169268400869999999999899998999986079960-----4001-
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHH
Q ss_conf 11111221033477788899999875115667887699998055410389853037899999999981877540258999
Q gi|254781018|r 81 RDFIAKKIPITSVLTHPNDLILYIFNRHLPHISCGISLDLHSTIPIGSGFGSSSAIISALSLALSSITHQPFCNKEKLIA 160 (337)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~i~s~iP~~~GLGSSaA~~va~~~al~~~~~~~~~~~~~~~~ 160 (337)
.......|..+....+.. +.........||++.++|++|.++|||||||++||++.++..+++..++ ..++.+
T Consensus 113 -----~~~~~~~w~~y~~~~~~~-l~~~~~~~~~G~~i~v~s~vP~gsGLsSSAAl~va~~~al~~~~~~~~~-~~~l~~ 185 (419)
T 1pie_A 113 -----EKKDGELWSNYVKGMIVM-LKGAGYEIDKGFELLIKGEIPTASGLSSSASLELLVGVVLDDLFNLNVP-RLELVQ 185 (419)
T ss_dssp -----TSCCTTCTHHHHHHHHHH-HHHTTCCCCSCEEEEEEECSCTTSSSCHHHHHHHHHHHHHHHHTTCCCC-HHHHHH
T ss_pred -----CCCCCCCHHHHHHHHHHH-HHHHCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCC-HHHHHH
T ss_conf -----456652068889999999-9983898788769999557886667663688888999899998589876-788999
Q ss_pred HHHHHHHCCCCCC-CCHHHHHHHHCCCEEEEC---CCC--CCCCCCCC--CEEEEECCCCCCCHHHHHHHH--------H
Q ss_conf 9998641157787-734578765326302402---785--20014788--439997497145379999999--------9
Q gi|254781018|r 161 ETGYIERLQHGKT-GIIDSTTIVMGGIIYINP---PQI--IKNETLVG--EWWAINTGMPESSTGECVSFV--------E 224 (337)
Q Consensus 161 ~a~~~e~~~~~~~-sg~D~~~~~~gg~~~~~~---~~~--~~~~~~~~--~~~~i~~~~~~~st~~~~~~~--------~ 224 (337)
+++..|+.+.+.+ |+|||+++.+|+...... ... ......+. .+++++++.++..+....... +
T Consensus 186 l~~~~E~~~~g~~~G~~Dq~as~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~s~~~~~~~~~~~~~r~~e~~~a~~ 265 (419)
T 1pie_A 186 LGQKTENDYIGVNSGILDQFAIGFGEVKKAIELDCNTLKYEMVPVELRDYDIVIMNTNKPRALTESKYNERFAETREALK 265 (419)
T ss_dssp HHHHHHHHTTCCCCCSHHHHHHHHCBTTEEEEEETTTCCEEEEECCCTTEEEEEEECCCCCCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCCCCHHHHHHCCCCCEEEHHHCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 99999986317887631478885075330100001454332355688786799962586553431123455888899999
Q ss_pred ---H--------------------HHCC------CHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH-CCCCCH
Q ss_conf ---7--------------------6412------068999876548999999838721689999995999997-189977
Q gi|254781018|r 225 ---Q--------------------HFSQ------SSIWSEFNAVTNEMMENIQKKDAEKTYKSVRVNQSLLES-IGVVPE 274 (337)
Q Consensus 225 ---~--------------------~~~~------~~~~~~~~~i~~~~~~al~~~d~~~l~~~~~~~~~ll~~-l~vs~~ 274 (337)
. ...+ ...+.....++.++.++++++|++.++++|+++|.++++ ++||+|
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ra~~~~~e~~rv~~~~~al~~~d~~~lG~Lm~esh~sL~~~~~vS~p 345 (419)
T 1pie_A 266 RMQTRLDIQSLGELSNEEFDANTDLIGDETLIKRARHAVYENNRTKIAQKAFVAGNLTKFGELLNASHASLKDDYEVTGL 345 (419)
T ss_dssp HHHHHCCCSSGGGCCHHHHHHTGGGTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTSCCCCH
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCH
T ss_conf 98774173207788798899987503778899999865068899999998753277888999999999999997579979
Q ss_pred HHHHHHHHHHHC-CC-EEEECCCCCCCCCEEEEEEEECCCHHHHHHH----------CCCEEEEEEECCCCEEE
Q ss_conf 999999999857-98-0895078867885089999857997999974----------59869999987997092
Q gi|254781018|r 275 TVGKFIRCIENN-GG-SAKIAGAGSIRGEKAGLVLVGGYNPEKLSSL----------YGYTCYKIKEDKNGTML 336 (337)
Q Consensus 275 ~l~~l~~~~~~~-g~-~ak~sGAG~~~Gg~~~~~l~~~~~~~~~~~~----------~~~~~~~~~~~~~G~~i 336 (337)
+||+|++++.+. |+ |+|||||| ||+|.+.|.+.+..++..+. .+..+|.+++. +|+++
T Consensus 346 eLd~lv~~a~~~~Ga~GaKltGAG---~GGc~iaLv~~~~~~~~~~~l~~~y~~~~g~~~~~~~~~p~-~Ga~~ 415 (419)
T 1pie_A 346 ELDTLAETAQKQAGVLGARMTGAG---FGGCAIALVAHDNVSAFRKAVGQVYEEVVGYPASFYVAQIG-SGSTK 415 (419)
T ss_dssp HHHHHHHHHHHSTTEEEEEECSSC---SSSEEEEEEEGGGHHHHHHHHHHHHHHHHSSCCEEEECCBC-CCSBC
T ss_pred HHHHHHHHHHHHCCCEEEEECCCC---CCEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCEEEEEECC-CCCEE
T ss_conf 999999999984895798970578---77289999760589999999999999841999739999658-88367
No 7
>3k17_A LIN0012 protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics, NEW YORK SGX research center for structural genomics; HET: PGE; 2.10A {Listeria innocua}
Probab=100.00 E-value=0 Score=321.50 Aligned_cols=309 Identities=17% Similarity=0.197 Sum_probs=225.5
Q ss_pred CCCEEEECCCEEEEECCCEEEC-CCEEEEEEECCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 9608998581799974454407-954899876672799999848982999955766675321001233334332111112
Q gi|254781018|r 8 TPHAHSIAPAKVILSGEYSSLY-GASALAVAITFYLRALLTTIEPSLIRIINSQTIEYSFEACRLLGHQIDQRHRDFIAK 86 (337)
Q Consensus 8 ~p~~~~~APGKi~L~GEh~v~~-G~~ai~~aI~~~~~v~i~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (337)
++.+.++|||||+|+|||+||+ |.+||++|||+++++++++++++.+++.+..+.. .+..... . ..
T Consensus 4 ~~~i~v~aPGKv~L~GEh~v~~~G~~al~~AI~~~~~v~i~~~~~~~i~i~~~~~~~-~~~~~~~----~--------~~ 70 (365)
T 3k17_A 4 KNKLQVKIPGKLYVAGEYAVVESGHTAILTAVNRYITLTLEDSERNELWIPHYENPV-SWPIGGE----L--------KP 70 (365)
T ss_dssp -CCEEEEEEEEEEEECTTGGGSTTCEEEEEEEEEEEEEEEEECSSCEEECTTCSSCB-CCCTTSC----C--------CC
T ss_pred CCEEEEEEEEEEEEEECCEEECCCCEEEEEEECCEEEEEEEECCCCEEEEEECCCCE-EEEECCC----C--------CC
T ss_conf 887999996599999868981599669999981509999999899879999668870-5885365----5--------66
Q ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCC----CCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 210334777888999998751156678876999980554----1038985303789999999998187754025899999
Q gi|254781018|r 87 KIPITSVLTHPNDLILYIFNRHLPHISCGISLDLHSTIP----IGSGFGSSSAIISALSLALSSITHQPFCNKEKLIAET 162 (337)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~i~s~iP----~~~GLGSSaA~~va~~~al~~~~~~~~~~~~~~~~~a 162 (337)
......+.......+..... ..+....|+++.+++++| .++|||||||++||++.+++.+++..++ .+++.+++
T Consensus 71 ~~~~~~~~~~~~~~~~~~l~-~~~~~~~g~~i~i~s~ip~~~g~gsGLgSSaA~~va~~~al~~~~~~~~~-~~~l~~~a 148 (365)
T 3k17_A 71 DGEHWTFTAEAINIATTFLK-SEGIELTPVKMVIETELIDQSGAKYGLGSSAAATVAVINALMTKFYPEIS-MLKKFKLA 148 (365)
T ss_dssp SCGGGHHHHHHHHHHHHHHH-HTTCCCCCEEEEEEESSBCTTSCBCSSCHHHHHHHHHHHHHHHHHCTTSC-HHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHH-HCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC-HHHHHHHH
T ss_conf 66511689999999999999-80999898359998752688886764679999999999999985054321-78888999
Q ss_pred HHHHHCCCCCCCCHHHHHHHHCCCEEEECCCCCCCC------------------------CCCCCEEEEECCCCCCCHHH
Q ss_conf 986411577877345787653263024027852001------------------------47884399974971453799
Q gi|254781018|r 163 GYIERLQHGKTGIIDSTTIVMGGIIYINPPQIIKNE------------------------TLVGEWWAINTGMPESSTGE 218 (337)
Q Consensus 163 ~~~e~~~~~~~sg~D~~~~~~gg~~~~~~~~~~~~~------------------------~~~~~~~~i~~~~~~~st~~ 218 (337)
+.+|+.+++.+||+|+++|+|||.+.|+..+..... ..+...+++..+....+|.+
T Consensus 149 ~~~E~~~~g~~sG~D~~~s~~GG~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~tg~~~~t~~ 228 (365)
T 3k17_A 149 ALSHLVVQGNGSCGDIASCMYGGWIAYTTFDQEWVKHRLAYKSLEWFMKEPWPMLQIETLEEPVPTFSVGWTGTPVSTGK 228 (365)
T ss_dssp HHHHHHHHSSCCSHHHHHHHHCSEEEEECCCHHHHHHHHTTSCHHHHHHSCCTTCEEEEECCCSSEEEEEECSCCCCHHH
T ss_pred HHHHHHHCCCCCHHHHHHHHCCCEEEEEECCCCCEEEECCCCCCCEEECCCCCHHHHHHHHHHHHCEEEEECCCCCCHHH
T ss_conf 99998744698602148887398399981784010221134663023237862355776541342006751699644399
Q ss_pred HHHHHHHHHCC-----CHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH------CCCCCHHHHHHHHHHHHCC
Q ss_conf 99999976412-----068999876548999999838721689999995999997------1899779999999998579
Q gi|254781018|r 219 CVSFVEQHFSQ-----SSIWSEFNAVTNEMMENIQKKDAEKTYKSVRVNQSLLES------IGVVPETVGKFIRCIENNG 287 (337)
Q Consensus 219 ~~~~~~~~~~~-----~~~~~~~~~i~~~~~~al~~~d~~~l~~~~~~~~~ll~~------l~vs~~~l~~l~~~~~~~g 287 (337)
.+..++..... ..++..+++++.++.++|+.+|++.++++|+++|.++++ ++|++|++++|++.+++.|
T Consensus 229 ~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~~~d~~~~g~lm~~~~~~l~~~~~~~~~~vs~~~l~~lv~~a~~~g 308 (365)
T 3k17_A 229 LVSQIHAFKQEDSKNYQHFLTRNNEIMKQIIQAFHTKDEELLYSSIKENRRILQELGTKAGVNIETSLLKELADSAENMG 308 (365)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHTCCCSCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCC
T ss_conf 99999986542648776578888788999999763168999999999999999962221587658999999999998679
Q ss_pred CEEEECCCCCCCCCEEEEEEEECCC-HHHHH---HHCCCEEEEEEECCCCEEE
Q ss_conf 8089507886788508999985799-79999---7459869999987997092
Q gi|254781018|r 288 GSAKIAGAGSIRGEKAGLVLVGGYN-PEKLS---SLYGYTCYKIKEDKNGTML 336 (337)
Q Consensus 288 ~~ak~sGAG~~~Gg~~~~~l~~~~~-~~~~~---~~~~~~~~~~~~~~~G~~i 336 (337)
+++|+|||| ||+|+++++++++ .+++. +..+++.+| +....+++
T Consensus 309 ~~ak~tGAG---~Ggc~~al~~~~~~~~~l~~~~~~~g~~~l~--~~~~~~~~ 356 (365)
T 3k17_A 309 GAGKSSGSG---GGDCGIAFSKTKELAEKLVNEWEKLGIKHLP--FHTGRVQI 356 (365)
T ss_dssp SEEEECTTC---SSSEEEEEESSHHHHHHHHHHHHHTTCEECC--CCBCCCEE
T ss_pred EEEEECCCC---CCCEEEEEECCHHHHHHHHHHHHHCCCEEEE--EEECCEEE
T ss_conf 089984606---5058999988889999999999987997621--26401351
No 8
>2x7i_A Mevalonate kinase; transferase; HET: CIT; 2.20A {Staphylococcus aureus}
Probab=100.00 E-value=0 Score=328.38 Aligned_cols=289 Identities=20% Similarity=0.272 Sum_probs=215.6
Q ss_pred CEEEECCCEEEEECCCEEECCCEEEEEEECC-CEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 0899858179997445440795489987667-279999984898299995576667532100123333433211111221
Q gi|254781018|r 10 HAHSIAPAKVILSGEYSSLYGASALAVAITF-YLRALLTTIEPSLIRIINSQTIEYSFEACRLLGHQIDQRHRDFIAKKI 88 (337)
Q Consensus 10 ~~~~~APGKi~L~GEh~v~~G~~ai~~aI~~-~~~v~i~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (337)
..+++|||||+|+|||+||||++||++|||+ ++++.+++.++.....++....... ...+.++
T Consensus 6 ~~~~~ApGKv~L~GEhavv~G~~ala~aI~~~~~~~~i~~~~~~~~~~~~~~~~~~~-----------~~~~~~~----- 69 (308)
T 2x7i_A 6 KGYGESTGKIILIGEHAVTFGEPAIAVPFNAGKIKVLIEALESGNYSSIKSDVYDGM-----------LYDAPDH----- 69 (308)
T ss_dssp EEEEEEEEEEEEEEBTTCCTTSCEEEEEEEEEEEEEEEEECCTTCCCEEEEEECSSC-----------CCCTTSC-----
T ss_pred CEEEEEEEEEEEEECCEEECCCCEEEEEEECCEEEEEEEECCCCCEEEEECCCCCCC-----------CCCCHHH-----
T ss_conf 389998038999967777659978999985788999999847897256425544565-----------4444279-----
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHC
Q ss_conf 03347778889999987511566788769999805541038985303789999999998187754025899999986411
Q gi|254781018|r 89 PITSVLTHPNDLILYIFNRHLPHISCGISLDLHSTIPIGSGFGSSSAIISALSLALSSITHQPFCNKEKLIAETGYIERL 168 (337)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~i~s~iP~~~GLGSSaA~~va~~~al~~~~~~~~~~~~~~~~~a~~~e~~ 168 (337)
...++..... ......|+++.++|+||.++|||||||++||++.+++++++++++ ++++.++|+.+|+.
T Consensus 70 --------~~~~~~~~~~--~~~~~~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~~~~~~ls-~~el~~la~~~E~~ 138 (308)
T 2x7i_A 70 --------LKSLVNRFVE--LNNITEPLAVTIQTNLPPSRGLGSSAAVAVAFVRASYDFLGKSLT-KEELIEKANWAEQI 138 (308)
T ss_dssp --------HHHHHHHHHH--HTTCCSCEEEEEEECCCTTSSSCHHHHHHHHHHHHHHHHHTCCCC-HHHHHHHHHHHHHH
T ss_pred --------HHHHHHHHHH--HCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHH
T ss_conf --------9999999999--649998859999478986578784178899999999985178866-89999998888876
Q ss_pred CCCCCCCHHHHHHHHCCCEEEECCCCCCCCCCC-CCEEEEECCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHHH
Q ss_conf 577877345787653263024027852001478-8439997497145379999999976412---068999876548999
Q gi|254781018|r 169 QHGKTGIIDSTTIVMGGIIYINPPQIIKNETLV-GEWWAINTGMPESSTGECVSFVEQHFSQ---SSIWSEFNAVTNEMM 244 (337)
Q Consensus 169 ~~~~~sg~D~~~~~~gg~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~st~~~~~~~~~~~~~---~~~~~~~~~i~~~~~ 244 (337)
.++.+||+|++++.+||.+.|++.+......++ +.++++..+....+|.+.+..+++...+ ...++++.+++.++.
T Consensus 139 ~~g~~sG~D~~~~~~gg~i~~~~~~~~~~~~~~~~~~~~l~~tg~~~~T~~~~~~v~~~~~~~~~~~~~~~i~~~~~~~~ 218 (308)
T 2x7i_A 139 AHGKPSGIDTQTIVSGKPVWFQKGHAETLKTLSLDGYMVVIDTGVKGSTRQAVHDVHKLCEDPQYMSHVKHIGKLVLRAS 218 (308)
T ss_dssp HHSSCCHHHHHHHHHTSCEEEETTEEEECSCCCBSSEEEEEECCC--CCSCCCC--------CCHHHHHHHHHHHHHHHH
T ss_pred HCCCCCCCCCHHHHHCCEEEECCCCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_conf 33788756337665125067327875321001334304651589764069999999997406066799999747899999
Q ss_pred HHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCC-EEEECCCCCCCCCEEEEEEEECCCH-HHH----HH
Q ss_conf 99983872168999999599999718997799999999985798-0895078867885089999857997-999----97
Q gi|254781018|r 245 ENIQKKDAEKTYKSVRVNQSLLESIGVVPETVGKFIRCIENNGG-SAKIAGAGSIRGEKAGLVLVGGYNP-EKL----SS 318 (337)
Q Consensus 245 ~al~~~d~~~l~~~~~~~~~ll~~l~vs~~~l~~l~~~~~~~g~-~ak~sGAG~~~Gg~~~~~l~~~~~~-~~~----~~ 318 (337)
++|+++|++.++++|+++|.++++++||+|++++|++.+++.|+ ++||||||+ |+|.+++..+.+. +++ .+
T Consensus 219 ~al~~~d~~~lg~lm~~~~~~l~~l~vs~p~l~~l~~~~~~~Ga~gaklsGaG~---Gg~~~al~~~~~~a~~i~~~l~~ 295 (308)
T 2x7i_A 219 DVIEHHKFEALADIFNECHADLKALTVSHDKIEQLMKIGKENGAIAGKLTGAGR---GGSMLLLAKDLPTAKNIVKAVEK 295 (308)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHTTCSEEEESBTTT---CSSEEEEESSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCEEEEECCCC---CCEEEEEECCHHHHHHHHHHHHH
T ss_conf 999865778999999999999987178988999999999978995899977785---22699997987899999999997
Q ss_pred HCCCEEEEEE
Q ss_conf 4598699999
Q gi|254781018|r 319 LYGYTCYKIK 328 (337)
Q Consensus 319 ~~~~~~~~~~ 328 (337)
...++++-.+
T Consensus 296 ~g~~~~~~~~ 305 (308)
T 2x7i_A 296 AGAAHTWIEN 305 (308)
T ss_dssp TTCSEEEEEE
T ss_pred CCCCEEEEEE
T ss_conf 6995799980
No 9
>3k85_A D-glycero-D-manno-heptose 1-phosphate kinase; bacteriodes thetaiotaomicron, protein structure initiative II(PSI II), nysgxrc; 2.28A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=0 Score=330.22 Aligned_cols=307 Identities=17% Similarity=0.125 Sum_probs=225.3
Q ss_pred CEEEECCCEEEEECCCEEE------CCCEEEEEEECCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 0899858179997445440------7954899876672799999848982999955766675321001233334332111
Q gi|254781018|r 10 HAHSIAPAKVILSGEYSSL------YGASALAVAITFYLRALLTTIEPSLIRIINSQTIEYSFEACRLLGHQIDQRHRDF 83 (337)
Q Consensus 10 ~~~~~APGKi~L~GEh~v~------~G~~ai~~aI~~~~~v~i~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (337)
-+.++|||||+|+|||+|| |||.||++|||+|+++++++++++.+.+.+....... .+...+...
T Consensus 3 ~i~~raP~RI~l~G~~tD~~~~~~~~gG~via~AId~~~~v~v~~~~~~~i~i~~~d~~~~~------~~~~~~~~~--- 73 (357)
T 3k85_A 3 LVRSKAPLRLGLAGGGSDVSPYSDIYGGLILNATINLYAYCTIEETNSGRIEINAYDAQCCK------SYLSMSQLE--- 73 (357)
T ss_dssp CEEEEEEEEEEEECTTTTSTTHHHHTCEEEEEEEEEEEEEEEEEECSSSEEEEEETTTTEEE------EEECCSSCC---
T ss_pred EEEEECCEEEEEECCCCCCCHHHCCCCCEEEEEEECCCEEEEEEECCCCEEEEEECCCCCEE------EEECCCCCC---
T ss_conf 99998999789870763681133448979999998681899999999996999965888516------981243123---
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf 11221033477788899999875115667887699998055410389853037899999999981877540258999999
Q gi|254781018|r 84 IAKKIPITSVLTHPNDLILYIFNRHLPHISCGISLDLHSTIPIGSGFGSSSAIISALSLALSSITHQPFCNKEKLIAETG 163 (337)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~i~s~iP~~~GLGSSaA~~va~~~al~~~~~~~~~~~~~~~~~a~ 163 (337)
...+..+....+... .......+.||++.++|++|.++|||||||++||++.+++.+++.+++ ++++.++|.
T Consensus 74 ------~~~~~~~i~~~~~~~-~~~~~~~~~g~~i~i~S~iP~gsGLGSSAA~~Va~~~al~~~~~~~l~-~~~l~~~a~ 145 (357)
T 3k85_A 74 ------IDGEASLIKGVYNRI-IRDYRLEPKSFKITTYNDAPAGSGLGTSSTMVVCILKAFIEWLSLPLG-DYETSRLAY 145 (357)
T ss_dssp ------CCSSSHHHHHHHHHH-HHHTTCCCCCEEEEEEESSCSSSSSCHHHHHHHHHHHHHHHHHTCCCC-HHHHHHHHH
T ss_pred ------CCCHHHHHHHHHHHH-HHHHCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCC-CHHHHHHHH
T ss_conf ------466067899999999-997278898759999657868889884068889889998865545115-388999999
Q ss_pred HHHHCCCCCCCC-HHHHHHHHCCCEEEECCCCCCCCC------------CCCCEEEEECCCCCCCHHHHHHHHHHHH---
Q ss_conf 864115778773-457876532630240278520014------------7884399974971453799999999764---
Q gi|254781018|r 164 YIERLQHGKTGI-IDSTTIVMGGIIYINPPQIIKNET------------LVGEWWAINTGMPESSTGECVSFVEQHF--- 227 (337)
Q Consensus 164 ~~e~~~~~~~sg-~D~~~~~~gg~~~~~~~~~~~~~~------------~~~~~~~i~~~~~~~st~~~~~~~~~~~--- 227 (337)
.+|...++.+|| +||+++++||.++++..+...... +...+++++++..+.++.......++..
T Consensus 146 ~~E~~~~g~~~G~~D~~~~~~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tg~~~~s~~~~~~~~~~~~~~~ 225 (357)
T 3k85_A 146 EIERKDLGLSGGKQDQYAAAFGGFNYMEFLQNDLVIVNPLKMKRWIVDELESSMVLYFTGRSRSSAAIINEQKKNTSEGN 225 (357)
T ss_dssp HHHHTTTCCCCCSHHHHHHHHCSEEEEEEETTTEEEEEEECCCHHHHHHHHHTEEEECC---------------------
T ss_pred HHHHHHCCCCCCCCCCHHHCCCCCCEEEECCCCCEEECCCCCCHHHHHHHHHCCEEEECCCCCHHHHHHHHHHHHHHHHH
T ss_conf 87665428987765406451676215774058843771123204455554303325424753307766678887664301
Q ss_pred -CCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHC--CCCCHHHHHHHHHHHHCCC-EEEECCCCCCCCCEE
Q ss_conf -120689998765489999998387216899999959999971--8997799999999985798-089507886788508
Q gi|254781018|r 228 -SQSSIWSEFNAVTNEMMENIQKKDAEKTYKSVRVNQSLLESI--GVVPETVGKFIRCIENNGG-SAKIAGAGSIRGEKA 303 (337)
Q Consensus 228 -~~~~~~~~~~~i~~~~~~al~~~d~~~l~~~~~~~~~ll~~l--~vs~~~l~~l~~~~~~~g~-~ak~sGAG~~~Gg~~ 303 (337)
.....+..+..++.++.++++++|++.++++|+++|.++.++ +|++|+++++++.+++.|+ |+|+||||+ |+|
T Consensus 226 ~~~~~~~~~~~~~~~~~~~a~~~~d~~~lg~lm~~~~~~~~~l~~~vs~~~ld~l~~~a~~~Ga~gaKlsGAGg---GG~ 302 (357)
T 3k85_A 226 QTAIEAMHKIKQSAIDTKLALLKGDVGEFARILGEGWENKKKMAGAITNPMIQEAFDVATGAGAMAGKVSGAGG---GGF 302 (357)
T ss_dssp CCTTHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHTTC-----------CCSCTTTTSCCSEEEECCCC------C
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCEEEEEEEECH---HHE
T ss_conf 88998887776666777876630269999999999999877641479989999999999768996999973061---028
Q ss_pred EEEEEECCCHHHHH---HHCCCEEEEEEECCCCEEE
Q ss_conf 99998579979999---7459869999987997092
Q gi|254781018|r 304 GLVLVGGYNPEKLS---SLYGYTCYKIKEDKNGTML 336 (337)
Q Consensus 304 ~~~l~~~~~~~~~~---~~~~~~~~~~~~~~~G~~i 336 (337)
.+++.+..+.+++. +-.+++++|++++.+|+++
T Consensus 303 ~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~G~~~ 338 (357)
T 3k85_A 303 IMFVVEPTRKEEVVRALNNLNGFVMPFQFIDDGAHG 338 (357)
T ss_dssp EEEECCHHHHHHHHHHHHTSSSCBCCCCBCCCCCEE
T ss_pred EEEEECHHHHHHHHHHHHHCCCEEEEEEECCCCCEE
T ss_conf 999987645999999998779849999991799518
No 10
>2aj4_A Galactokinase; galactosemia, transcription, transferase; HET: GLA ANP; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=0 Score=319.66 Aligned_cols=306 Identities=17% Similarity=0.147 Sum_probs=203.5
Q ss_pred CCCCCCCCCEEEECCCEEEEECCCEEECCCEEEEEEECCCEEEEEEECCCCEEEEEECCCCC-CCCCCCCCCCCCCCCCC
Q ss_conf 54357996089985817999744544079548998766727999998489829999557666-75321001233334332
Q gi|254781018|r 2 KQQTSQTPHAHSIAPAKVILSGEYSSLYGASALAVAITFYLRALLTTIEPSLIRIINSQTIE-YSFEACRLLGHQIDQRH 80 (337)
Q Consensus 2 ~~~~~~~p~~~~~APGKi~L~GEh~v~~G~~ai~~aI~~~~~v~i~~~~~~~~~~~s~~~~~-~~~~~~~~~~~~~~~~~ 80 (337)
+++|+.+|+.+++|||||+|+|||+||.||+||++||++++++.+++++++.+++.+..... +.....+...+ ..
T Consensus 57 ~~~fg~~P~~v~~APGRVnLiGEHtDY~gG~VLp~AI~~~~~v~v~~~~d~~~~i~s~~~~~~~~~~~~dl~~~---~~- 132 (548)
T 2aj4_A 57 ISAYDAKPDFVARSPGRVNLIGEHIDYCDFSVLPLAIDFDMLCAVKVLNEKNPSITLINADPKFAQRKFDLPLD---GS- 132 (548)
T ss_dssp HHHHSSCCSEEEEEEEEEEEECCSCGGGTCCBEEEEEEEEEEEEEEEECCSSCEEEEEESSTTSCCEEEECCTT---SC-
T ss_pred HHHHCCCCCEEEECCCCEEECCCCCCCCCCEEEEEEHCCCEEEEEEECCCCCEEEEEEECCCCCCEEEEECCCC---CC-
T ss_conf 99868998889987841785127540489835806850068999999679955999973487654268842676---43-
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHH--------HHCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCC--
Q ss_conf 1111122103347778889999987--------511566788769999805541038985303789999999998187--
Q gi|254781018|r 81 RDFIAKKIPITSVLTHPNDLILYIF--------NRHLPHISCGISLDLHSTIPIGSGFGSSSAIISALSLALSSITHQ-- 150 (337)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~g~~i~i~s~iP~~~GLGSSaA~~va~~~al~~~~~~-- 150 (337)
..........|.+|+...+..+. .+.......||++.++|+||+|+|||||||++||++.++..+++.
T Consensus 133 --~~~~~~~~~~W~~Yv~g~~~~~~~~~~~~~~~~~~~~~~~G~~i~I~s~IP~gaGLSSSAAl~va~~~al~~~~~~~~ 210 (548)
T 2aj4_A 133 --YVTIDPSVSDWSNYFKCGLHVAHSFLKKLAPERFASAPLAGLQVFCEGDVPTGSGLSSSAAFICAVALAVVKANMGPG 210 (548)
T ss_dssp --CCCCCTTSCCHHHHHHHHHHHHHHHHHHHCHHHHSSSCCCEEEEEEEECSCTTSSSCHHHHHHHHHHHHHHHHHHCTT
T ss_pred --CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCC
T ss_conf --232476654267799999999999998755664157888766999977877788855488999999999997311677
Q ss_pred -CCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCC---CEEEECCCCC-CC--CCC-----CCCEEEEECCCCCCCH--
Q ss_conf -75402589999998641157787734578765326---3024027852-00--147-----8843999749714537--
Q gi|254781018|r 151 -PFCNKEKLIAETGYIERLQHGKTGIIDSTTIVMGG---IIYINPPQII-KN--ETL-----VGEWWAINTGMPESST-- 216 (337)
Q Consensus 151 -~~~~~~~~~~~a~~~e~~~~~~~sg~D~~~~~~gg---~~~~~~~~~~-~~--~~~-----~~~~~~i~~~~~~~st-- 216 (337)
.++ ...+..+++.+|..++..+|+|||++|++|+ .++++..+.. .. ..+ ...+++++++.+....
T Consensus 211 ~~~~-~~~~a~~~~~e~~~vG~~~G~mDQ~as~~g~~~~al~id~~~~~~~~~~~lp~~~~~~~~fvi~nS~v~~~k~~l 289 (548)
T 2aj4_A 211 YHMS-KQNLMRITVVAEHYVGVNNGGMDQAASVCGEEDHALYVEFKPQLKATPFKFPQLKNHEISFVIANTLVVSNKFET 289 (548)
T ss_dssp CCCB-HHHHHHHHTTGGGGGTCCCCSHHHHHHHHCCTTCEEEEECSSSCEEEEECCCCCSSCEEEEEEEECCCCCCTTTT
T ss_pred CCCC-HHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCEEEEECCCCCCCEEECCCCCCCCCCCEEEEEECCCCCCCCCC
T ss_conf 7645-888878778888754788846888998706678799711478763133257765556825887523555441002
Q ss_pred ---------HHHHHHHH---HH----------------------------------------------------------
Q ss_conf ---------99999999---76----------------------------------------------------------
Q gi|254781018|r 217 ---------GECVSFVE---QH---------------------------------------------------------- 226 (337)
Q Consensus 217 ---------~~~~~~~~---~~---------------------------------------------------------- 226 (337)
.++....+ ..
T Consensus 290 a~s~Yn~R~~ec~~Aa~~l~~~~~~~~~~~~~~~~~~~~~Lrd~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 369 (548)
T 2aj4_A 290 APTNYNLRVVEVTTAANVLAATYGVVLLSGKEGSSTNKGNLRDFMNVYYARYHNISTPWNGDIESGIERLTKMLVLVEES 369 (548)
T ss_dssp TTTTHHHHHHHHHHHHHHHHHHTTCCCC--------CCCCHHHHHHHHHHHHHCCCSCCCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 65201278999999999972110433112333343343205665555555420124431013567899999988766776
Q ss_pred H-----------------------------------------CCCHHHHHHHHHHHHHHHHHHCCC-------CHHHHHH
Q ss_conf 4-----------------------------------------120689998765489999998387-------2168999
Q gi|254781018|r 227 F-----------------------------------------SQSSIWSEFNAVTNEMMENIQKKD-------AEKTYKS 258 (337)
Q Consensus 227 ~-----------------------------------------~~~~~~~~~~~i~~~~~~al~~~d-------~~~l~~~ 258 (337)
. .+-..+-..+.++.++.++|+++| ++.+|++
T Consensus 370 ~~~~~~~~~~~~v~~~l~~~~~e~~~~~l~~~~~~~~~~~l~~Ra~Hvv~E~~RV~~a~~al~~~d~~~~~~~~~~lG~L 449 (548)
T 2aj4_A 370 LANKKQGFSVDDVAQSLNCSREEFTRDYLTTSPVRFQVLKLYQRAKHVYSESLRVLKAVKLMTTASFTADEDFFKQFGAL 449 (548)
T ss_dssp HGGGTTCBCHHHHHHHHTCCHHHHHHHHHSSSCCCCSCBCHHHHHHHHHHHHHHHHHHHHHHHC--CCSHHHHHHHHHHH
T ss_pred HHHCCCCCCHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
T ss_conf 65202457788998762434777766540023101002788899999999999999999999748943104599999999
Q ss_pred HHHHHHHHHH-CCCCCHHHHHHHHHHHHCCC-EEEECCCCCCCCCEEEEEEEEC---CCHHHHH
Q ss_conf 9995999997-18997799999999985798-0895078867885089999857---9979999
Q gi|254781018|r 259 VRVNQSLLES-IGVVPETVGKFIRCIENNGG-SAKIAGAGSIRGEKAGLVLVGG---YNPEKLS 317 (337)
Q Consensus 259 ~~~~~~ll~~-l~vs~~~l~~l~~~~~~~g~-~ak~sGAG~~~Gg~~~~~l~~~---~~~~~~~ 317 (337)
|+++|..+++ ++||+|+||.|++++++.|+ |+|||||| ||+|.+.|.+. .+.+++.
T Consensus 450 mneSH~SL~~~yevS~peLD~lv~~a~~~Ga~GARlTGaG---fGGc~vaLVp~~~~~~v~~~~ 510 (548)
T 2aj4_A 450 MNESQASCDKLYECSCPEIDKICSIALSNGSYGSRLTGAG---WGGCTVHLVPGGPNGNIEKVK 510 (548)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHTTCSEEEECTTC---SSSEEEEEEEESTTCCHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCEEEEEECCC---CCCEEEEEECCCCHHHHHHHH
T ss_conf 9999999987015999999999999987799089985687---610699995583266799999
No 11
>2cz9_A Probable galactokinase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.50A {Pyrococcus horikoshii} PDB: 2dei_A* 2dej_A* 1s4e_A*
Probab=100.00 E-value=0 Score=310.98 Aligned_cols=302 Identities=14% Similarity=0.110 Sum_probs=208.1
Q ss_pred EEEECCCEEEEECCCEEECCCEEEEEEECCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf 89985817999744544079548998766727999998489829999557666753210012333343321111122103
Q gi|254781018|r 11 AHSIAPAKVILSGEYSSLYGASALAVAITFYLRALLTTIEPSLIRIINSQTIEYSFEACRLLGHQIDQRHRDFIAKKIPI 90 (337)
Q Consensus 11 ~~~~APGKi~L~GEh~v~~G~~ai~~aI~~~~~v~i~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (337)
..++|||||+|+|||+||+|++||++|||+|+++.+++.+ .+.+.+..+.... .+...+. ...
T Consensus 2 i~v~APgrv~L~GeH~d~~gg~vi~~AI~~~~~v~~~~~~--~~~i~s~~~~~~~------~~~~~~~---------~~~ 64 (350)
T 2cz9_A 2 IKVKSPGRVNLIGEHTDYTYGYVMPMAINLYTKIEAEKHG--EVILYSEHFGEER------KFSLNDL---------RKE 64 (350)
T ss_dssp EEEEEEEEEEEECTTCGGGTCEEEEEEEEEEEEEEEEEES--SEEEEETTTTEEE------EECTTCC---------CCC
T ss_pred EEEECCEEEEEEECCEEECCCEEEEEEECCCEEEEEEECC--CEEEEECCCCCCE------EEECCCC---------CCC
T ss_conf 8999178899475887668975796784051999999889--5799977889737------9975202---------456
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 34777888999998751156678876999980554103898530378999999999818775402589999998641157
Q gi|254781018|r 91 TSVLTHPNDLILYIFNRHLPHISCGISLDLHSTIPIGSGFGSSSAIISALSLALSSITHQPFCNKEKLIAETGYIERLQH 170 (337)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~g~~i~i~s~iP~~~GLGSSaA~~va~~~al~~~~~~~~~~~~~~~~~a~~~e~~~~ 170 (337)
..|..+....+..... ......|+++.++|++|.++|||||||++||++.+++.+++.+++ +.++.++++.+|...+
T Consensus 65 ~~~~~~~~~~~~~~~~--~~~~~~G~~i~i~S~iP~gsGLgSSAA~~va~~~al~~~~~~~l~-~~~l~~~a~~~E~~~~ 141 (350)
T 2cz9_A 65 NSWIDYVKGIFWVLKE--SDYEVGGIKGRVSGNLPLGAGLSSSASFEVGILETLDKLYNLKLD-SLSKVLLAKKAENEFV 141 (350)
T ss_dssp SSTHHHHHHHHHHHHH--TTCCCCEEEEEEECSCCTTSSSCHHHHHHHHHHHHHHHHTTCCCC-HHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHH--CCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHHHC
T ss_conf 8689999999999997--088888869999578888877440899999999999986078887-6999999999999760
Q ss_pred CCCCC-HHHHHHHHCCCEEE---ECCCC--CCCCCCC-CCEEEEECCCCCCCHHHHHHHHHH--------HH--------
Q ss_conf 78773-45787653263024---02785--2001478-843999749714537999999997--------64--------
Q gi|254781018|r 171 GKTGI-IDSTTIVMGGIIYI---NPPQI--IKNETLV-GEWWAINTGMPESSTGECVSFVEQ--------HF-------- 227 (337)
Q Consensus 171 ~~~sg-~D~~~~~~gg~~~~---~~~~~--~~~~~~~-~~~~~i~~~~~~~st~~~~~~~~~--------~~-------- 227 (337)
+.+|| +||+++++|+...+ +.... ..+.... ..+++++++..+.+........+. ..
T Consensus 142 g~~~G~~D~~a~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~sg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (350)
T 2cz9_A 142 GVPCGILDQFAVVFGREGNVIFLDTHTLDYEYIPFPKDVSILVFYTGVRRELASSEYAERKHIAEESLKILGKGSSKEVR 221 (350)
T ss_dssp CCCCCSHHHHHHHHCCTTEEEEEETTTCCEEEEECCTTEEEEEEECSCC----CHHHHHHHHHHHHHHHHHTCSCGGGCC
T ss_pred CCCCCCCHHHHHHCCCCCEEEECCCCCCEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
T ss_conf 89987005899865877769971279860799745887268998447401110457899999999999876320368899
Q ss_pred C-----CC-------HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH-HHHHHCCCCCHHHHHHHHHHHHCCC-EEEEC
Q ss_conf 1-----20-------689998765489999998387216899999959-9999718997799999999985798-08950
Q gi|254781018|r 228 S-----QS-------SIWSEFNAVTNEMMENIQKKDAEKTYKSVRVNQ-SLLESIGVVPETVGKFIRCIENNGG-SAKIA 293 (337)
Q Consensus 228 ~-----~~-------~~~~~~~~i~~~~~~al~~~d~~~l~~~~~~~~-~ll~~l~vs~~~l~~l~~~~~~~g~-~ak~s 293 (337)
. .. ..+.....++.++.++++++|++.++++|+++| .+++.+++|+|++|.|++.+++.|+ |+|||
T Consensus 222 ~~~~~~~~~~~~~~~~~v~~e~~~~~~~~~~~~~~d~~~~g~lm~~~~~~L~~~~~vs~~~ld~lv~~a~~~Ga~GaKlt 301 (350)
T 2cz9_A 222 EGELSKLPPLHRKFFGYIVRENARVLEVRDALKEGNVEEVGKILTTAHWDLAKNYEVSCKELDFFVERALKLGAYGARLT 301 (350)
T ss_dssp GGGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCEEEEE
T ss_conf 98877777999999999999999999999875027899999999999999987208996899999999997799389982
Q ss_pred CCCCCCCCEEEEEEEECCCHHHHHHH--------CC--CEEEEEEECCCCEEE
Q ss_conf 78867885089999857997999974--------59--869999987997092
Q gi|254781018|r 294 GAGSIRGEKAGLVLVGGYNPEKLSSL--------YG--YTCYKIKEDKNGTML 336 (337)
Q Consensus 294 GAG~~~Gg~~~~~l~~~~~~~~~~~~--------~~--~~~~~~~~~~~G~~i 336 (337)
||| ||+|.++|++..+.+++.+. .+ -..|.++++ +|+.|
T Consensus 302 GAG---~GGc~iaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~i 350 (350)
T 2cz9_A 302 GAG---FGGSAIALVDKEDAETIGEEILREYLKRFPWKARHFIVEPS-DGVGI 350 (350)
T ss_dssp SSC---SSSEEEEEEEGGGHHHHHHHHHHHHHHHCCSCCEEEEECEE-CCSBC
T ss_pred CCC---CCEEEEEEECHHHHHHHHHHHHHHHHHHCCCCCCEEEEECC-CCCCC
T ss_conf 378---87299999777789999999999999852998768998368-98839
No 12
>2pg9_A Phosphomevalonate kinase; GHMP kinase superfamily, transferase; HET: PMV ANP; 1.90A {Streptococcus pneumoniae} PDB: 1k47_A* 3gon_A*
Probab=100.00 E-value=0 Score=313.73 Aligned_cols=295 Identities=17% Similarity=0.190 Sum_probs=220.0
Q ss_pred CEEEECCCEEEEECCCEEEC-CCEEEEEEECCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 08998581799974454407-95489987667279999984898299995576667532100123333433211111221
Q gi|254781018|r 10 HAHSIAPAKVILSGEYSSLY-GASALAVAITFYLRALLTTIEPSLIRIINSQTIEYSFEACRLLGHQIDQRHRDFIAKKI 88 (337)
Q Consensus 10 ~~~~~APGKi~L~GEh~v~~-G~~ai~~aI~~~~~v~i~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (337)
.+.++|||||+|+|||+|+| |++||++|||+|++++++++++..+. ++.+. .... . ..+..
T Consensus 3 ~~~~~apGKv~L~GE~aVv~~G~~al~~AI~~~~~v~v~~~~~~~i~--~~~~~-~~~~-----~-~~~~~--------- 64 (337)
T 2pg9_A 3 MIAVKTCGKLYWAGEYAILEPGQLALIKDIPIYMRAEIAFSDSYRIY--SDMFD-FAVD-----L-RPNPD--------- 64 (337)
T ss_dssp CEEEEEEEEEEEECTTGGGSTTCEEEEEEEEEEEEEEEEECSSCEEE--ETTSS-SCBC-----S-SCCTT---------
T ss_pred EEEEEECCEEEEEECCEEECCCCCEEEEEECCEEEEEEEECCCCEEE--ECCCC-CCCC-----C-CCCCC---------
T ss_conf 69999780999980654986999499999502499999999997899--84788-6540-----5-77875---------
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCC---CCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf 0334777888999998751156678876999980554103---8985303789999999998187754025899999986
Q gi|254781018|r 89 PITSVLTHPNDLILYIFNRHLPHISCGISLDLHSTIPIGS---GFGSSSAIISALSLALSSITHQPFCNKEKLIAETGYI 165 (337)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~i~s~iP~~~---GLGSSaA~~va~~~al~~~~~~~~~~~~~~~~~a~~~ 165 (337)
..........+.... ........|+++.++|++|.++ |||||||++||++.+++++++.+++ .+++.+++..+
T Consensus 65 --~~~~~~~l~~~~~~~-~~~~~~~~~~~i~i~s~ip~~~~~~GLgSSAA~~va~~~al~~~~~~~l~-~~~l~~la~~~ 140 (337)
T 2pg9_A 65 --YSLIQETIALMGDFL-AVRGQNLRPFSLAIYGKMEREGKKFGLGSSGSVVVLVVKALLALYNLSVD-QNLLFKLTSAV 140 (337)
T ss_dssp --THHHHHHHHHHHHHH-HHTTCCCCCEEEEEECCSEETTEECSSCHHHHHHHHHHHHHHHHTTCCCC-HHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHH-HHCCCCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHH
T ss_conf --189999999999999-97199988649999852687767677650899999999999985187533-99999999999
Q ss_pred HHCCCCCCCCHHHHHHHHCCCEEEECCCCCC------------------------CCCCCCCEEEEECCCCCCCHHHHHH
Q ss_conf 4115778773457876532630240278520------------------------0147884399974971453799999
Q gi|254781018|r 166 ERLQHGKTGIIDSTTIVMGGIIYINPPQIIK------------------------NETLVGEWWAINTGMPESSTGECVS 221 (337)
Q Consensus 166 e~~~~~~~sg~D~~~~~~gg~~~~~~~~~~~------------------------~~~~~~~~~~i~~~~~~~st~~~~~ 221 (337)
|...++++||+|+++|.|||++.|++.+... ........+++..++...+|.+.+.
T Consensus 141 E~~~~g~~sg~D~~~~~~Gg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tg~~~~t~~~v~ 220 (337)
T 2pg9_A 141 LLKRGDNGSMGDLACIAAEDLVLYQSFDRQKVAAWLEEENLATVLERDWGFSISQVKPTLECDFLVGWTKEVAVSSHMVQ 220 (337)
T ss_dssp HHHTTCCSCSHHHHHHHHTSCEEEECCCHHHHHHHHHHSCHHHHHHSCCCCEEEECCCCSCCEEEEEECCCCCCHHHHHH
T ss_pred HHHHCCCCCCCCHHHHHCCCEEEEEECCHHHHHHHHCCCCCCEEEECCCCCEEEEECCCCCCCEEEEECCCCCCHHHHHH
T ss_conf 98745898864547771797399993682442233113330003304787326980488775289995699622599999
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHCCCEEEECCCCCCC
Q ss_conf 9997641206899987654899999983872168999999599999718--99779999999998579808950788678
Q gi|254781018|r 222 FVEQHFSQSSIWSEFNAVTNEMMENIQKKDAEKTYKSVRVNQSLLESIG--VVPETVGKFIRCIENNGGSAKIAGAGSIR 299 (337)
Q Consensus 222 ~~~~~~~~~~~~~~~~~i~~~~~~al~~~d~~~l~~~~~~~~~ll~~l~--vs~~~l~~l~~~~~~~g~~ak~sGAG~~~ 299 (337)
.++++..+ .+++.+.+++.++.++|+++|++.++++|+++|.++++++ +++|++++|++.++++|+++|+||||
T Consensus 221 ~v~~~~~~-~~~~~~~~~v~~~~~al~~~d~~~l~~lm~~~~~~l~~l~~~i~~p~l~~l~~~a~~~g~~aklsGAG--- 296 (337)
T 2pg9_A 221 QIKQNINQ-NFLTSSKETVVSLVEALEQGKSEKIIEQVEVASKLLEGLSTDIYTPLLRQLKEASQDLQAVAKSSGAG--- 296 (337)
T ss_dssp HHGGGCCH-HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTTTTSSEEEEECTTC---
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCEEEECCCC---
T ss_conf 99877778-99999999999999998738899999999999999982787779989999999998199599991526---
Q ss_pred CCEEEEEEEECCC-HHHHHH---HCCCE-EEEEEEC
Q ss_conf 8508999985799-799997---45986-9999987
Q gi|254781018|r 300 GEKAGLVLVGGYN-PEKLSS---LYGYT-CYKIKED 330 (337)
Q Consensus 300 Gg~~~~~l~~~~~-~~~~~~---~~~~~-~~~~~~~ 330 (337)
||+|+++|.++.+ .+++.+ -.|.+ +|..++.
T Consensus 297 ~Gg~~ial~~~~~~~~~l~~~~~~~Gi~~~~~~~~~ 332 (337)
T 2pg9_A 297 GGDCGIALSFDAQSTKTLKNRWADLGIELLYQERIG 332 (337)
T ss_dssp SSSEEEEEECSHHHHHHHHHHHHHTTCEEEEEEEC-
T ss_pred CHHEEEEEECCHHHHHHHHHHHHHCCCEEEEEEEEC
T ss_conf 155699998888999999999997799498886406
No 13
>2oi2_A Mevalonate kinase; enzyme-inhibitor complex, transferase; HET: DP6; 2.50A {Streptococcus pneumoniae}
Probab=100.00 E-value=0 Score=314.91 Aligned_cols=260 Identities=21% Similarity=0.205 Sum_probs=205.5
Q ss_pred EEEECCCEEEEECCCEEECCCEEEEEEECC-CEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 899858179997445440795489987667-2799999848982999955766675321001233334332111112210
Q gi|254781018|r 11 AHSIAPAKVILSGEYSSLYGASALAVAITF-YLRALLTTIEPSLIRIINSQTIEYSFEACRLLGHQIDQRHRDFIAKKIP 89 (337)
Q Consensus 11 ~~~~APGKi~L~GEh~v~~G~~ai~~aI~~-~~~v~i~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (337)
.+++|||||+|+|||+|+||++||++||+. ++++.+.+.++... . .. .+.
T Consensus 6 ~~~~ApGKi~L~GEHavv~G~~aIa~ai~~~~~~~~~~~~~~~~~----------------~--~~-----~~~------ 56 (292)
T 2oi2_A 6 GVGQAHSKIILIGEHAVVYGYPAISLPLLEVEVTCKVVPAESPWR----------------L--YE-----EDT------ 56 (292)
T ss_dssp EEEEEEEEEEEECTTGGGGTCCEEEEEEEEEEEEEEEEECSSCCC----------------C--CC-----CSH------
T ss_pred EEEEEEEEEEEEECCEECCCCCEEEEEECEEEEEEEEEECCCCCE----------------E--CC-----CCH------
T ss_conf 699973268999517440698569988751499999998788752----------------1--46-----741------
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 33477788899999875115667887699998055410389853037899999999981877540258999999864115
Q gi|254781018|r 90 ITSVLTHPNDLILYIFNRHLPHISCGISLDLHSTIPIGSGFGSSSAIISALSLALSSITHQPFCNKEKLIAETGYIERLQ 169 (337)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~i~s~iP~~~GLGSSaA~~va~~~al~~~~~~~~~~~~~~~~~a~~~e~~~ 169 (337)
+... .............|+++.++|+||.++|||||||++||++.+++.+++.+++ ++++.++|+.+|+..
T Consensus 57 ----~~~~----v~~~l~~~~~~~~g~~i~i~s~iP~g~GLgSSaA~~va~~~al~~~~~~~l~-~~el~~la~~~E~~~ 127 (292)
T 2oi2_A 57 ----LSMA----VYASLEYLNITEACIRCEIDSAIPEKRGMGSSAAISIAAIRAVFDYYQADLP-HDVLEILVNRAEMIA 127 (292)
T ss_dssp ----HHHH----HHHHHHHHTCSCCCEEEEEC----CCGGGSCHHHHHHHHHHHHHHHHTCCCC-HHHHHHHHHHHHHHT
T ss_pred ----HHHH----HHHHHHHHCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHC
T ss_conf ----5389----9999998289988769999778999889780578999999999998773499-999999999876532
Q ss_pred CCCCCCHHHHHHHHCCCEEEECCCC-CCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHH
Q ss_conf 7787734578765326302402785-20014788439997497145379999999976412-068999876548999999
Q gi|254781018|r 170 HGKTGIIDSTTIVMGGIIYINPPQI-IKNETLVGEWWAINTGMPESSTGECVSFVEQHFSQ-SSIWSEFNAVTNEMMENI 247 (337)
Q Consensus 170 ~~~~sg~D~~~~~~gg~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~st~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~al 247 (337)
++.+||+|+++|.+||.+.|..... ..++.....++++..+....+|.+.+..++++..+ .+.++.+.+++.++.++|
T Consensus 128 ~g~~sG~d~~~~~~gg~~~~~~~~~~~~l~~~~~~~~~i~~~g~~~~T~~~v~~v~~~~~~~~~~~~~i~~~~~~~~~al 207 (292)
T 2oi2_A 128 HMNPSGLDAKTCLSDQPIRFIKNVGFTELEMDLSAYLVIADTGVYGHTREAIQVVQNKGKDALPFLHALGELTQQAEIAI 207 (292)
T ss_dssp TCCCCSHHHHHHTCSSCEEEETTTEEEECCCCCSCEEEEEECSSCCCHHHHHHHHHHTGGGGHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCEEEECCCEEEECCCCCEEECCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 57886557537982881896058871332345633699995798743499999999860555667777889999999877
Q ss_pred HCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCC-EEEECCCCCCCCCEEEEEEEECC
Q ss_conf 83872168999999599999718997799999999985798-08950788678850899998579
Q gi|254781018|r 248 QKKDAEKTYKSVRVNQSLLESIGVVPETVGKFIRCIENNGG-SAKIAGAGSIRGEKAGLVLVGGY 311 (337)
Q Consensus 248 ~~~d~~~l~~~~~~~~~ll~~l~vs~~~l~~l~~~~~~~g~-~ak~sGAG~~~Gg~~~~~l~~~~ 311 (337)
+++|++.++++|+++|.++++++||+|++|.+++.+++.|+ ++|+|||| +|+|.+++..+.
T Consensus 208 ~~~d~~~lg~lm~~~h~~l~~l~vs~p~ld~li~~a~~~GalgaklsGaG---~Gg~~~al~~~~ 269 (292)
T 2oi2_A 208 SQKDAEGLGQILSQAHLHLKEIGVSSLEADSLVETALSHGALGAKMSGGG---LGGCIIALVTNL 269 (292)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTTCSEEEEESSS---SSSEEEEEESCH
T ss_pred HCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEECCC---CCCEEEEEECCH
T ss_conf 51618899999999999999758998899999999987899689996888---746699998888
No 14
>3hul_A HSK, HK, homoserine kinase; structural genomics, putative homoserine kinase, THRB, amino-acid biosynthesis, ATP-binding, cytoplasm; 2.19A {Listeria monocytogenes}
Probab=99.95 E-value=2.7e-25 Score=176.77 Aligned_cols=276 Identities=17% Similarity=0.107 Sum_probs=185.4
Q ss_pred EEEECCCEE-EEECCCEEECCCEEEEEEECCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 899858179-9974454407954899876672799999848982999955766675321001233334332111112210
Q gi|254781018|r 11 AHSIAPAKV-ILSGEYSSLYGASALAVAITFYLRALLTTIEPSLIRIINSQTIEYSFEACRLLGHQIDQRHRDFIAKKIP 89 (337)
Q Consensus 11 ~~~~APGKi-~L~GEh~v~~G~~ai~~aI~~~~~v~i~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (337)
+.++||+++ || | -|.-+|.+||++|.++++++.++......... . .+ +.+.. ..
T Consensus 3 ~~v~~Pat~aN~-g-----~Gfd~lg~Ai~l~d~v~v~~~~~~~~i~~~~~-~-------~~---~~d~~--------nl 57 (298)
T 3hul_A 3 LRIRVPATTANL-G-----PGFDSCGLALTLYLTLDIGAEADSWYIEHNIG-G-------GI---PHDET--------NV 57 (298)
T ss_dssp EEEEEEEEEESC-T-----TCTTTEEEEEEEEEEEEEEEECSSCEEECCCC-T-------TC---CSSTT--------SH
T ss_pred EEEEEEEEHHHC-C-----CCHHHEEEECCCCEEEEEEECCCCEEEEECCC-C-------CC---CCCCH--------HH
T ss_conf 999960175650-7-----27255156010885999998389559993786-7-------79---99952--------69
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 33477788899999875115667887699998055410389853037899999999981877540258999999864115
Q gi|254781018|r 90 ITSVLTHPNDLILYIFNRHLPHISCGISLDLHSTIPIGSGFGSSSAIISALSLALSSITHQPFCNKEKLIAETGYIERLQ 169 (337)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~i~s~iP~~~GLGSSaA~~va~~~al~~~~~~~~~~~~~~~~~a~~~e~~~ 169 (337)
. .....+. .....+++++++++||.++|||||||.++|++.+++++++++++. +++.+++...+
T Consensus 58 i-----------~~~~~~~-~~~~~~~~I~i~k~IP~gaGLGssSa~aaA~l~al~~~~~~~l~~-~~l~~~~~~~~--- 121 (298)
T 3hul_A 58 I-----------IETALNL-APNLTPHHLVMTCDIPPARGLGSSSAAVVAGIELANTLAELNLSK-EEKVRIAAEIE--- 121 (298)
T ss_dssp H-----------HHHHHHH-CTTCCCEEEEEEECSCTTSSSSHHHHHHHHHHHHHHHHTTCCCCH-HHHHHHHHHHH---
T ss_pred H-----------HHHHHHH-HCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCH-HHHHHHHHHCC---
T ss_conf 9-----------9999986-343788379997268776687852889999999999972877776-78898864345---
Q ss_pred CCCCCCHHHHHHHHCCCEEEECCCC---CCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf 7787734578765326302402785---2001478843999749714537999999997641206899987654899999
Q gi|254781018|r 170 HGKTGIIDSTTIVMGGIIYINPPQI---IKNETLVGEWWAINTGMPESSTGECVSFVEQHFSQSSIWSEFNAVTNEMMEN 246 (337)
Q Consensus 170 ~~~~sg~D~~~~~~gg~~~~~~~~~---~~~~~~~~~~~~i~~~~~~~st~~~~~~~~~~~~~~~~~~~~~~i~~~~~~a 246 (337)
+++.|..+++++|...+..... ......+..++++..+....+|.+.+...++........ ........+..+
T Consensus 122 ---~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~st~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 197 (298)
T 3hul_A 122 ---GHPDNVAPAVLGNWVVGAKLDGEDFYVRHLFPDCALIAFIPKAELLTSESRGVLPDTLPFKEAV-QASSIANVMIAA 197 (298)
T ss_dssp ---SCSTTHHHHHHCSEEEEEEETTEEEEEEECCC-CEEEEEECCCCCC--------CCEEEHHHHH-HHHHHHHHHHHH
T ss_pred ---CCCCCCCEEEECCCEEEEECCCCEEEEECCCCCCCEEEEECCCCCCCCEEEEECCCCCCHHHHH-HHHHHHHHHHHH
T ss_conf ---5678876399758369996588568993368764179994683455112122010236656665-544456788876
Q ss_pred HHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCC-EEEECCCCCCCCCEEEEEEEECCCHHHHHHH-----C
Q ss_conf 983872168999999599999718997799999999985798-0895078867885089999857997999974-----5
Q gi|254781018|r 247 IQKKDAEKTYKSVRVNQSLLESIGVVPETVGKFIRCIENNGG-SAKIAGAGSIRGEKAGLVLVGGYNPEKLSSL-----Y 320 (337)
Q Consensus 247 l~~~d~~~l~~~~~~~~~ll~~l~vs~~~l~~l~~~~~~~g~-~ak~sGAG~~~Gg~~~~~l~~~~~~~~~~~~-----~ 320 (337)
+.++|++.++..+..++.........+|+++++++.+++.|+ +++|||||+ +++++....+.+++.+. .
T Consensus 198 ~~~~d~~~~~~~~~~~~~~~~~~~~l~p~l~~l~~~~~~~Ga~ga~lSGsGp-----tvfal~~~~~a~~v~~~l~~~~~ 272 (298)
T 3hul_A 198 ILRNDMTLAGEMMERDLWHEKYRSQLVPHLAQIRDVAKNQGAYAACLSGAGP-----TVLVFAPRNLANKLQTSLQTLEI 272 (298)
T ss_dssp HTTTCHHHHHHHHTCCCC-----CTTGGGHHHHHHHHHTTTCCEEEECTTSS-----CEEEEECGGGHHHHHHHHHTTCC
T ss_pred HHCCCHHHHHHHHHHHCCCHHHHHHHCHHHHHHHHHHHHCCCCEEEEECCCC-----CEEEEECHHHHHHHHHHHHHCCC
T ss_conf 6338899998653101000678988561589999999849993899945015-----17999779999999999986599
Q ss_pred CCEEEEEEECCCCEEE
Q ss_conf 9869999987997092
Q gi|254781018|r 321 GYTCYKIKEDKNGTML 336 (337)
Q Consensus 321 ~~~~~~~~~~~~G~~i 336 (337)
+++++.++++.+|++|
T Consensus 273 ~~~v~~~~~~~~Ga~V 288 (298)
T 3hul_A 273 DADVLLLDVEGSGAEV 288 (298)
T ss_dssp SSEEEEEEBCCCCCEE
T ss_pred CEEEEEEEECCCCEEE
T ss_conf 8699990026995699
No 15
>1h72_C HK, homoserine kinase; transferase, threonine biosynthesis; HET: ANP; 1.8A {Methanococcus jannaschii} SCOP: d.14.1.5 d.58.26.1 PDB: 1fwl_A 1fwk_A* 1h73_A* 1h74_A*
Probab=99.91 E-value=7.9e-23 Score=161.22 Aligned_cols=286 Identities=15% Similarity=0.133 Sum_probs=183.0
Q ss_pred CEEEECCCEE-EEECCCEEECCCEEEEEEEC-CCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 0899858179-99744544079548998766-727999998489829999557666753210012333343321111122
Q gi|254781018|r 10 HAHSIAPAKV-ILSGEYSSLYGASALAVAIT-FYLRALLTTIEPSLIRIINSQTIEYSFEACRLLGHQIDQRHRDFIAKK 87 (337)
Q Consensus 10 ~~~~~APGKi-~L~GEh~v~~G~~ai~~aI~-~~~~v~i~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (337)
.+.++||+++ || | -|.-+|.+|++ .+.+++++++++..+.+..... .++ .+. ..
T Consensus 2 ~v~v~~Pat~aNl-g-----~GfDslglAl~~~~d~i~v~~~~~~~i~i~~~~~--------~~~---~~~-------~~ 57 (296)
T 1h72_C 2 KVRVKAPCTSANL-G-----VGFDVFGLCLKEPYDVIEVEAIDDKEIIIEVDDK--------NIP---TDP-------DK 57 (296)
T ss_dssp EEEEEEEEEEECT-G-----GGTTTEEEEEEEEEEEEEEEEESSSSEEEEESCT--------TSC---CCT-------TT
T ss_pred EEEEEEEECHHHC-C-----CCCCHHHEEECCCCCEEEEEECCCCCEEEEECCC--------CCC---CCH-------HH
T ss_conf 7999975407766-7-----6621422400678668999996899399997787--------798---873-------54
Q ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q ss_conf 10334777888999998751156678876999980554103898530378999999999818775402589999998641
Q gi|254781018|r 88 IPITSVLTHPNDLILYIFNRHLPHISCGISLDLHSTIPIGSGFGSSSAIISALSLALSSITHQPFCNKEKLIAETGYIER 167 (337)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~i~s~iP~~~GLGSSaA~~va~~~al~~~~~~~~~~~~~~~~~a~~~e~ 167 (337)
+... . ....+ ........|++|++.++||.++|||||||.++|++.+++++++++++ .+++.+++...+.
T Consensus 58 nl~~-------~-a~~~~-~~~~~~~~~~~I~i~k~IP~~aGLGssSa~aaA~l~al~~~~~l~l~-~~el~~ia~~~~~ 127 (296)
T 1h72_C 58 NVAG-------I-VAKKM-IDDFNIGKGVKITIKKGVKAGSGLGSSAASSAGTAYAINELFKLNLD-KLKLVDYASYGEL 127 (296)
T ss_dssp SHHH-------H-HHHHH-HHHTTCCCEEEEEEECSSCTTSSSCHHHHHHHHHHHHHHHHTTCCCC-HHHHHHHHHHHHH
T ss_pred HHHH-------H-HHHHH-HHHHCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHH
T ss_conf 2999-------9-99999-99868999859999817987567686378999999999985279989-8999999997535
Q ss_pred CCCCCCCCHHHHHHHHCCCEEEECCCCCC---CCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 15778773457876532630240278520---014788439997497145379999999976412068999876548999
Q gi|254781018|r 168 LQHGKTGIIDSTTIVMGGIIYINPPQIIK---NETLVGEWWAINTGMPESSTGECVSFVEQHFSQSSIWSEFNAVTNEMM 244 (337)
Q Consensus 168 ~~~~~~sg~D~~~~~~gg~~~~~~~~~~~---~~~~~~~~~~i~~~~~~~st~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 244 (337)
...+.+++.|...+.+||...+....... ....+..++++.......+|.+.................. .....+.
T Consensus 128 ~~~g~~~~~~~~~~~~gG~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 206 (296)
T 1h72_C 128 ASSGAKHADNVAPAIFGGFTMVTNYEPLEVLHIPIDFKLDILIAIPNISINTKEAREILPKAVGLKDLVNNV-GKACGMV 206 (296)
T ss_dssp HHHSSCCCTTHHHHHHCSEEEEEETTTTEEEEECCCSCCCEEEECCSSCCCHHHHHHTSCSCCCHHHHHHHH-HHHHHHH
T ss_pred HHCCCCCCCCCEEEEECCEEEECCCCCEEEEECCCCCCCEEEEECCCCCCCHHHHHHHHHCCCCHHHHHHHH-HHHHHHH
T ss_conf 304876543431389757123048873034412687660799945884200287777764023335566544-4356789
Q ss_pred HHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCEEEECCCCCCCCCEEEEEEEECCCHHHHHHH---CC
Q ss_conf 999838721689999995999997189977999999999857980895078867885089999857997999974---59
Q gi|254781018|r 245 ENIQKKDAEKTYKSVRVNQSLLESIGVVPETVGKFIRCIENNGGSAKIAGAGSIRGEKAGLVLVGGYNPEKLSSL---YG 321 (337)
Q Consensus 245 ~al~~~d~~~l~~~~~~~~~ll~~l~vs~~~l~~l~~~~~~~g~~ak~sGAG~~~Gg~~~~~l~~~~~~~~~~~~---~~ 321 (337)
.++...+.+.+...+..++.+..-.....|++..+++.+++.+.+++|||||+ +++.+..+.+.+.+.+. +.
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~i~~~l~~ga~~a~mSGsGp-----tvfal~~~~~~~~i~~~l~~~~ 281 (296)
T 1h72_C 207 YALYNKDKSLFGRYMMSDKVIEPVRGKLIPNYFKIKEEVKDKVYGITISGSGP-----SIIAFPKEEFIDEVENILRDYY 281 (296)
T ss_dssp HHHHTTCHHHHHHHHTTCCSSHHHHHTTSTTHHHHHHHHTTTEEEEEECTTSS-----CEEEEECGGGHHHHHHHHHHHC
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCEEEEECHHH-----EEEEEECHHHHHHHHHHHHHHC
T ss_conf 98853778788876642202999998719179999999987997899987357-----5999977779999999999854
Q ss_pred CEEEEEEECCCCEEE
Q ss_conf 869999987997092
Q gi|254781018|r 322 YTCYKIKEDKNGTML 336 (337)
Q Consensus 322 ~~~~~~~~~~~G~~i 336 (337)
...+..++ .+|++|
T Consensus 282 ~~~i~~~~-~~G~~v 295 (296)
T 1h72_C 282 ENTIRTEV-GKGVEV 295 (296)
T ss_dssp SCEEEECB-CCCCEE
T ss_pred CCEEEEEE-CCCEEE
T ss_conf 82399887-996388
No 16
>2v8p_A 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; nucleotide-binding, isoprene biosynthesis, transferase, ATP-binding, non-mevalonate; HET: CDP ADP; 2.1A {Aquifex aeolicus} PDB: 2v2v_A* 2v2q_A* 2v34_A* 2v2z_A* 2vf3_A*
Probab=99.90 E-value=2.2e-21 Score=152.16 Aligned_cols=258 Identities=18% Similarity=0.222 Sum_probs=168.3
Q ss_pred CCCEEEECCCEEEEE---------CCCEEECCCEEEEEEECCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 960899858179997---------44544079548998766727999998489829999557666753210012333343
Q gi|254781018|r 8 TPHAHSIAPAKVILS---------GEYSSLYGASALAVAITFYLRALLTTIEPSLIRIINSQTIEYSFEACRLLGHQIDQ 78 (337)
Q Consensus 8 ~p~~~~~APGKi~L~---------GEh~v~~G~~ai~~aI~~~~~v~i~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 78 (337)
++-..++||+||||+ |.|-+ ..+..+|+++-++.+++.. ..+..... .
T Consensus 2 ~~mi~~~apAKiNL~L~i~~kr~dGyH~i----~s~~~~i~l~D~i~i~~~~---~~~~~~~~---------~------- 58 (271)
T 2v8p_A 2 SHMIKVLSPAKINLGLWVLGRLPSGYHEI----LTLYQEIPFYDEIYIREGV---LRVETNIG---------I------- 58 (271)
T ss_dssp CCCEEEEEEEEEEEEEEEEEECTTSCEEE----EEEEEEEEEEEEEEEEESS---CEEEESSC---------C-------
T ss_pred CCEEEEEEEEEEEEEEEECCCCCCCCCEE----EEEEEEECCCCEEEEEECC---CEEECCCC---------C-------
T ss_conf 95199984168975455178589997725----7899992687399999687---07768889---------9-------
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHH
Q ss_conf 32111112210334777888999998751156678876999980554103898530378999999999818775402589
Q gi|254781018|r 79 RHRDFIAKKIPITSVLTHPNDLILYIFNRHLPHISCGISLDLHSTIPIGSGFGSSSAIISALSLALSSITHQPFCNKEKL 158 (337)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~i~s~iP~~~GLGSSaA~~va~~~al~~~~~~~~~~~~~~ 158 (337)
....+...... ..+.... ....|+++.++++||+++|||||||.++|++.+++++++.+++. +++
T Consensus 59 -----~~~~Nli~ka~--------~~~~~~~-~~~~~~~I~i~K~IP~~~GLGggSs~aaa~l~~ln~l~~~~ls~-~el 123 (271)
T 2v8p_A 59 -----PQEENLVYKGL--------REFERIT-GIEINYSIFIQKNIPPGAGLGGGSSNLAVVLKKVNELLGSPLSE-EEL 123 (271)
T ss_dssp -----CTTTCHHHHHH--------HHHHHHH-CCCCCEEEEEECCSCTTSSSCHHHHHHHHHHHHHHHHTTCCSCH-HHH
T ss_pred -----CCCHHHHHHHH--------HHHHHHH-CCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCH-HHH
T ss_conf -----96311999999--------9977975-99987489997699887877743278999999999850677423-667
Q ss_pred HHHHHHHHHCCCCCCCCHHHHHHHHCCCEEEECCCC--CCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCHHHHHH
Q ss_conf 999998641157787734578765326302402785--200147884399974971453799999999764120689998
Q gi|254781018|r 159 IAETGYIERLQHGKTGIIDSTTIVMGGIIYINPPQI--IKNETLVGEWWAINTGMPESSTGECVSFVEQHFSQSSIWSEF 236 (337)
Q Consensus 159 ~~~a~~~e~~~~~~~sg~D~~~~~~gg~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~st~~~~~~~~~~~~~~~~~~~~ 236 (337)
.+++..+ |.|+..+.+|+......... ..++..+..++++..+....+|+++++.++.......
T Consensus 124 ~~la~~i---------g~dvp~fl~g~~~~~~g~Ge~i~~~~~~~~~~~vlv~P~~~~sT~~a~~~l~~~~~~~~----- 189 (271)
T 2v8p_A 124 RELVGSI---------SADAPFFLLGKSAIGRGKGEVLEPVETEISGKITLVIPQVSSSTGRVYSSLREEHFVTP----- 189 (271)
T ss_dssp HHHHHHH---------CTTTGGGGTCSEEEEETTTTEEEECCCCCCSEEEEEECSSCCCHHHHHHTCCTTSCCCH-----
T ss_pred HHHHCCC---------CCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEECCCCCCCHHHHHHHHHHHCCCC-----
T ss_conf 7653024---------78878433687600048853799976157752799815657751789976513303452-----
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCEEEECCCCCCCCCEEEEEEEE-CCCHHH
Q ss_conf 7654899999983872168999999599999718997799999999985798089507886788508999985-799799
Q gi|254781018|r 237 NAVTNEMMENIQKKDAEKTYKSVRVNQSLLESIGVVPETVGKFIRCIENNGGSAKIAGAGSIRGEKAGLVLVG-GYNPEK 315 (337)
Q Consensus 237 ~~i~~~~~~al~~~d~~~l~~~~~~~~~ll~~l~vs~~~l~~l~~~~~~~g~~ak~sGAG~~~Gg~~~~~l~~-~~~~~~ 315 (337)
........++..++++.+...+. ....++ .|+++++.+.++..+.++.|||||++ .|.+.. ..+.+.
T Consensus 190 -~~~~~~~~~l~~~~~~~~~n~l~---~~~~~l---~P~i~~i~~~l~~~~~~~~lSGSGst-----vfal~~~~~~~~~ 257 (271)
T 2v8p_A 190 -EYAEEKIQRIISGEVEEIENVLG---DIAREL---YPEINEVYRFVEYLGFKPFVSGSGST-----VYFFGGASEELKK 257 (271)
T ss_dssp -HHHHHHHHHHHTTCGGGCCBHHH---HHHHHH---CHHHHHHHHHHHHTTCCCEECTTSSC-----EEESSCCCHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHH---HHHHHH---CHHHHHHHHHHHHCCCCEEEECCCHH-----HEEEECCHHHHHH
T ss_conf -00588999887531899998888---899986---90999999999838998899784432-----1689899999999
Q ss_pred HHHHCCCEEEEEEE
Q ss_conf 99745986999998
Q gi|254781018|r 316 LSSLYGYTCYKIKE 329 (337)
Q Consensus 316 ~~~~~~~~~~~~~~ 329 (337)
+.+..+|+++++++
T Consensus 258 a~k~~~w~v~~~~l 271 (271)
T 2v8p_A 258 AAKMRGWKVVELEL 271 (271)
T ss_dssp HHHHHTCEEEEEEC
T ss_pred HHHCCCCEEEEEEC
T ss_conf 87407998999889
No 17
>2hk2_A Diphosphomevalonate decarboxylase; mevalonate diphosphate decarboxylase, lyase; 2.30A {Staphylococcus aureus} PDB: 2hk3_A
Probab=99.87 E-value=8.4e-19 Score=135.84 Aligned_cols=285 Identities=14% Similarity=0.060 Sum_probs=169.1
Q ss_pred CCEEEECCCEEEEE---CCCEEEC---CCEEEEEEEC-CCEEEEEEECCCCE-EEEEECCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 60899858179997---4454407---9548998766-72799999848982-999955766675321001233334332
Q gi|254781018|r 9 PHAHSIAPAKVILS---GEYSSLY---GASALAVAIT-FYLRALLTTIEPSL-IRIINSQTIEYSFEACRLLGHQIDQRH 80 (337)
Q Consensus 9 p~~~~~APGKi~L~---GEh~v~~---G~~ai~~aI~-~~~~v~i~~~~~~~-~~~~s~~~~~~~~~~~~~~~~~~~~~~ 80 (337)
-.+.|+||-.|=|+ |-+-.-+ -.+.|++.++ .+|+.+++.+++.. ..++.+
T Consensus 7 ~~~~a~a~~nialiKYwGk~d~~~~~P~n~SiS~tl~~~~t~t~v~~~~~~~~d~~~~n--------------------- 65 (331)
T 2hk2_A 7 KSGKARAHTNIALIKYWGKKDEALIIPMNNSISVTLEKFYTETKVTFNDQLTQDQFWLN--------------------- 65 (331)
T ss_dssp EEEEEEEEEEEEEECCCCEEETTTTEESSCEEEEEEEEEEEEEEEEEETTCCSCEEEET---------------------
T ss_pred CCEEEECCCEEEEEEECCCCCCCCCCCCCCEEEEECCCCCEEEEEEEECCCCCEEEEEC---------------------
T ss_conf 52399876506888522756777778899877689778801799998069885189999---------------------
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHH
Q ss_conf 11111221033477788899999875115667887699998055410389853037899999999981877540258999
Q gi|254781018|r 81 RDFIAKKIPITSVLTHPNDLILYIFNRHLPHISCGISLDLHSTIPIGSGFGSSSAIISALSLALSSITHQPFCNKEKLIA 160 (337)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~i~s~iP~~~GLGSSaA~~va~~~al~~~~~~~~~~~~~~~~ 160 (337)
...............+.....+ .....+++|.+.++||.++|||||||..+|++.+++.+++.+++. +++..
T Consensus 66 -----g~~~~~~~~~~i~~~~~~~r~~--~~~~~~~~I~s~n~iP~~~GLgSSAa~~aA~~~a~~~~~~~~l~~-~el~~ 137 (331)
T 2hk2_A 66 -----GEKVSGKELEKISKYMDIVRNR--AGIDWYAEIESDNFVPTAAGLASSASAYAALAAACNQALDMQLSD-KDLSR 137 (331)
T ss_dssp -----TEEECTHHHHHHHHHHHHHHHH--HTCCCEEEEEEEEESCGGGTCCCHHHHHHHHHHHHHHHTTCCCCH-HHHHH
T ss_pred -----CEECCCHHHHHHHHHHHHHHHH--CCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCH-HHHHH
T ss_conf -----9538826889999999999986--199874799997368753332578999999999998762057998-99999
Q ss_pred HHHHHHHCCCCCCCCHHHHHHHHCCCEEEECCCCC------C---CCCCCCCEEEEECCCCCCC---HHHHHHH-HHHHH
Q ss_conf 99986411577877345787653263024027852------0---0147884399974971453---7999999-99764
Q gi|254781018|r 161 ETGYIERLQHGKTGIIDSTTIVMGGIIYINPPQII------K---NETLVGEWWAINTGMPESS---TGECVSF-VEQHF 227 (337)
Q Consensus 161 ~a~~~e~~~~~~~sg~D~~~~~~gg~~~~~~~~~~------~---~~~~~~~~~~i~~~~~~~s---t~~~~~~-~~~~~ 227 (337)
+|... | .|.+.|+|||++........ . ...++..+.++........ ..+.... .+...
T Consensus 138 lA~~g--------s-Gs~~~si~GG~v~~~~~~~~~~~~~~~l~~~~~~~~~~~vi~~~~~~~k~~~s~~~~~~~~~~~~ 208 (331)
T 2hk2_A 138 LARIG--------S-GSASRSIYGGFAEWEKGYSDETSYAVPLESNHFEDDLAMIFVVINQHSKKVPSRYGMSLTRNTSR 208 (331)
T ss_dssp HHHTT--------C-GGGGGGGSSSEEEEECCSSTTTCEEEECCCTTGGGGEEEEEECCCCSSCCCCHHHHHHHHHHHCT
T ss_pred HHHHC--------C-CCCCCCEECCEEEEECCCCCCCCEEEEEECCCCCCCCEEEEEECCCCCCCHHHHHHHHCCCCCCC
T ss_conf 97642--------8-76210116876677447887663355540466787523899937854553245542000114660
Q ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH-C-----CC-----CCHHHHHHHHHHHHCCC-EEEECCC
Q ss_conf 12068999876548999999838721689999995999997-1-----89-----97799999999985798-0895078
Q gi|254781018|r 228 SQSSIWSEFNAVTNEMMENIQKKDAEKTYKSVRVNQSLLES-I-----GV-----VPETVGKFIRCIENNGG-SAKIAGA 295 (337)
Q Consensus 228 ~~~~~~~~~~~i~~~~~~al~~~d~~~l~~~~~~~~~ll~~-l-----~v-----s~~~l~~l~~~~~~~g~-~ak~sGA 295 (337)
......+.......++..+++++|++.+++++..+...+.. + .. .++++.++++.+++.|+ ++.++||
T Consensus 209 ~~~~~~~~~~~~~~~l~~al~~~D~~~l~~~~e~d~~~~h~~~~~~~~~~~~~~~~t~~i~~~i~~~r~~G~~~~~~sgA 288 (331)
T 2hk2_A 209 FYQYWLDHIDEDLAEAKAAIQDKDFKRLGEVIEENGLRMHATNLGSTPPFTYLVQESYDVMALVHECREAGYPCYFTMDA 288 (331)
T ss_dssp THHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSSSCCCSCCHHHHHHHHHHHHHHHTTCCEEEECCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 89999987567799999998769999999999876887799875347861100420599999999998589849999567
Q ss_pred CCCCCCEEEEEEEECCCHHHHHH-H----CCCEEEEEEECCCCEEE
Q ss_conf 86788508999985799799997-4----59869999987997092
Q gi|254781018|r 296 GSIRGEKAGLVLVGGYNPEKLSS-L----YGYTCYKIKEDKNGTML 336 (337)
Q Consensus 296 G~~~Gg~~~~~l~~~~~~~~~~~-~----~~~~~~~~~~~~~G~~i 336 (337)
|++ .+++....+.+++.+ + ...+++..+++.+|++|
T Consensus 289 GPt-----v~~l~~~~~~~~v~~~l~~~f~~~~~~i~~~~~~G~~i 329 (331)
T 2hk2_A 289 GPN-----VKILVEKKNKQQIIDKLLTQFDNNQIIDSDIIATGIEI 329 (331)
T ss_dssp SSC-----EEEEEEHHHHHHHHHHHTTTSCGGGEEEEEBCCSCCEE
T ss_pred CHH-----EEEEECHHHHHHHHHHHHHHCCCCEEEEECCCCCCCEE
T ss_conf 634-----49998786899999999964997629996367988875
No 18
>2ww4_A 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; non-mevalonate pathway, isoprenoid biosynthesis, transferase; HET: ADP; 2.00A {Escherichia coli} PDB: 1oj4_A*
Probab=99.84 E-value=4.1e-19 Score=137.83 Aligned_cols=227 Identities=15% Similarity=0.176 Sum_probs=142.4
Q ss_pred CCCEEEEE----CCCEE-ECCCEEEEEEECCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 58179997----44544-07954899876672799999848982999955766675321001233334332111112210
Q gi|254781018|r 15 APAKVILS----GEYSS-LYGASALAVAITFYLRALLTTIEPSLIRIINSQTIEYSFEACRLLGHQIDQRHRDFIAKKIP 89 (337)
Q Consensus 15 APGKi~L~----GEh~v-~~G~~ai~~aI~~~~~v~i~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (337)
||+||+|+ |...| ||.-..+...|+++-++++++.++..+.+...... . ....+.
T Consensus 7 aPAKiNL~L~V~~kr~dGyH~l~s~~~~i~L~D~I~i~~~~~~~i~i~~~~~~-------------~-------~~~~n~ 66 (283)
T 2ww4_A 7 SPAKLNLFLYITGQRADGYHTLQTLFQFLDYGDTISIELRDDGDIRLLTPVEG-------------V-------EHEDNL 66 (283)
T ss_dssp EEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEEEEEEEESSSCEEECSCBTT-------------B-------CGGGSH
T ss_pred CCCEEECCEEECCCCCCCCCEEEEEEEEECCCCEEEEEECCCCCEEEECCCCC-------------C-------CCCCCH
T ss_conf 70237066310887999975036788970788599999989998899707765-------------7-------731016
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 33477788899999875115667887699998055410389853037899999999981877540258999999864115
Q gi|254781018|r 90 ITSVLTHPNDLILYIFNRHLPHISCGISLDLHSTIPIGSGFGSSSAIISALSLALSSITHQPFCNKEKLIAETGYIERLQ 169 (337)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~i~s~iP~~~GLGSSaA~~va~~~al~~~~~~~~~~~~~~~~~a~~~e~~~ 169 (337)
....... +..............|+++++.++||+++|||||||.++|++.+++++++.+++. +++.+++..+
T Consensus 67 ~~ka~~~---l~~~~~~~~~~~~~~~~~I~i~KnIP~gaGLGggSs~aAa~l~~ln~l~~~~l~~-~~l~~~a~~i---- 138 (283)
T 2ww4_A 67 IVRAARL---LMKTAADSGRLPTGSGANISIDKRLPMGGGLGGGSSNAATVLVALNHLWQCGLSM-DELAEMGLTL---- 138 (283)
T ss_dssp HHHHHHH---HHHHHHHTTCSCTTCEEEEEEECCCC-CTTSCHHHHHHHHHHHHHHHHTTCCCCH-HHHHHHHHTT----
T ss_pred HHHHHHH---HHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCH-HHHHHHHHHC----
T ss_conf 8999999---9998655431277897699997489877667757179999999999971788308-9999987321----
Q ss_pred CCCCCCHHHHHHHHCCCEEEECC-CCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 77877345787653263024027-85200147884399974971453799999999764120689998765489999998
Q gi|254781018|r 170 HGKTGIIDSTTIVMGGIIYINPP-QIIKNETLVGEWWAINTGMPESSTGECVSFVEQHFSQSSIWSEFNAVTNEMMENIQ 248 (337)
Q Consensus 170 ~~~~sg~D~~~~~~gg~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~st~~~~~~~~~~~~~~~~~~~~~~i~~~~~~al~ 248 (337)
|.|+..+.+||....... +......++..++++..+....+|+++.+......... ....+.+.
T Consensus 139 -----gsDVp~~l~g~~a~~~g~Ge~i~~~~~~~~~~vlv~P~~~iST~~~~~~~~~~~~~~----------~~~~~~~~ 203 (283)
T 2ww4_A 139 -----GADVPVFVRGHAAFAEGVGEILTPVDPPEKWYLVAHPGVSIPTPVIFKDPELPRNTP----------KRSIETLL 203 (283)
T ss_dssp -----CTTHHHHHHTBCEEEETTTTEEEECCCCCCEEEEECCSCCCCHHHHHTCTTSCCCCC----------CCCHHHHH
T ss_pred -----CCCCCCEECCCCEEECCCCCEEEECCCCCCCCEEECCCCCCCHHHHHHCCCCCCCCC----------CCCHHHHH
T ss_conf -----578743224861674389867640356543206744897877299997000133774----------01399999
Q ss_pred C----CCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCEEEECCCCCC
Q ss_conf 3----8721689999995999997189977999999999857980895078867
Q gi|254781018|r 249 K----KDAEKTYKSVRVNQSLLESIGVVPETVGKFIRCIENNGGSAKIAGAGSI 298 (337)
Q Consensus 249 ~----~d~~~l~~~~~~~~~ll~~l~vs~~~l~~l~~~~~~~g~~ak~sGAG~~ 298 (337)
. +|++.... +. .|++.++.+.+.++++ ..|||||++
T Consensus 204 ~~~~~Ndle~~~~---------~~----~p~i~~i~~~l~~~g~-~~mSGSGst 243 (283)
T 2ww4_A 204 KCEFSNDCEVIAR---------KR----FREVDAVLSWLLEYAP-SRLTGTGAC 243 (283)
T ss_dssp TSCCCBTTHHHHH---------HH----CHHHHHHHHHHHTTSC-EEECTTSSC
T ss_pred HHHHHCCHHHHHH---------HH----CHHHHHHHHHHHCCCC-EEEECHHHE
T ss_conf 7654131899999---------86----8699999999856698-686264011
No 19
>2gs8_A Mevalonate pyrophosphate decarboxylase; structural genomics, PSI, protein structure initiative; HET: MSE; 1.50A {Streptococcus pyogenes m1 gas}
Probab=99.80 E-value=2.2e-15 Score=114.30 Aligned_cols=271 Identities=13% Similarity=0.094 Sum_probs=167.7
Q ss_pred CEEEECCCEEEEECCCEEECCC----------EEEEEEE-CCCEEEEEEECCCCE--EEEEECCCCCCCCCCCCCCCCCC
Q ss_conf 0899858179997445440795----------4899876-672799999848982--99995576667532100123333
Q gi|254781018|r 10 HAHSIAPAKVILSGEYSSLYGA----------SALAVAI-TFYLRALLTTIEPSL--IRIINSQTIEYSFEACRLLGHQI 76 (337)
Q Consensus 10 ~~~~~APGKi~L~GEh~v~~G~----------~ai~~aI-~~~~~v~i~~~~~~~--~~~~s~~~~~~~~~~~~~~~~~~ 76 (337)
.+++.||-.|=|. -|+|. +.|++++ +.+|+.+++..++.. .++.-+
T Consensus 8 ~vt~~a~~NIAli----KYWGK~d~~~~lP~n~SiS~TL~~~~T~T~v~~~~~~~~~d~~~~n----------------- 66 (317)
T 2gs8_A 8 VITVTSYANIAII----KYWGKENQAKMIPSTSSISLTLENMFTTTSVSFLPDTATSDQFYIN----------------- 66 (317)
T ss_dssp EEEEEEEEEEEEE----CCCCEEETTTTEESSCEEEEEEEEEEEEEEEEECCTTCCSCEEEET-----------------
T ss_pred CEEEEECCCEEEE----ECCCCCCCCCCCCCCCEEEEECCCCCCEEEEEEECCCCCCEEEEEC-----------------
T ss_conf 3899932618888----3057568888789998251696789868999983588885399999-----------------
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHH
Q ss_conf 43321111122103347778889999987511566788769999805541038985303789999999998187754025
Q gi|254781018|r 77 DQRHRDFIAKKIPITSVLTHPNDLILYIFNRHLPHISCGISLDLHSTIPIGSGFGSSSAIISALSLALSSITHQPFCNKE 156 (337)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~i~s~iP~~~GLGSSaA~~va~~~al~~~~~~~~~~~~ 156 (337)
...... .....+...+++........++|.+..++|.++|||||||..+|++.+++.+++.+++ .+
T Consensus 67 ---------g~~~~~----~~~~~~~~~~~~~~~~~~~~~~I~s~n~~P~aaGLaSSAs~~aA~~~a~~~~~~~~l~-~~ 132 (317)
T 2gs8_A 67 ---------GILQND----EEHTKISAIIDQFRQPGQAFVKMETQNNMPTAAGLSSSSSGLSALVKACDQLFDTQLD-QK 132 (317)
T ss_dssp ---------TEECCH----HHHHHHHHHHTTTCCTTCCCEEEEEECCSCGGGCCCHHHHHHHHHHHHHHHHHTCCCC-HH
T ss_pred ---------CEECCC----HHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCC-HH
T ss_conf ---------987780----6788999999862431366089999725753100000688999999999997378888-89
Q ss_pred HHHHHHHHHHHCCCCCCCCHHHHHHHHCCCEEEECCCCC--CCCCCCCCE--EEEEC--CCCCCCHHHHHHHHHHHHCCC
Q ss_conf 899999986411577877345787653263024027852--001478843--99974--971453799999999764120
Q gi|254781018|r 157 KLIAETGYIERLQHGKTGIIDSTTIVMGGIIYINPPQII--KNETLVGEW--WAINT--GMPESSTGECVSFVEQHFSQS 230 (337)
Q Consensus 157 ~~~~~a~~~e~~~~~~~sg~D~~~~~~gg~~~~~~~~~~--~~~~~~~~~--~~i~~--~~~~~st~~~~~~~~~~~~~~ 230 (337)
++..+|...+ | +.+.|+|||++........ .....+... +++.. .+...||..+...+.......
T Consensus 133 ~ls~lAr~gs--------G-Sa~rSi~GG~v~w~~~~~~~~~~~~~~~~~~~i~~v~~~~k~v~St~~~~~~~~~s~~~~ 203 (317)
T 2gs8_A 133 ALAQKAKFAS--------G-SSSRSFFGPVAAWDKDSGAIYKVETDLKMAMIMLVLNAAKKPISSREGMKLCRDTSTTFD 203 (317)
T ss_dssp HHHHHHHHHH--------G-GGGGGGSCSEEEECTTTCCEEECCCCCCEEEEEEECCCSSCCSCHHHHHHHHHHHCTTHH
T ss_pred HHHHHHHHCC--------C-CCCCHHHCCEEEEECCCCCEEECCCCCCHHEEEEEEECCCCCCCCHHHHHHHHCCCHHHH
T ss_conf 9999997528--------7-705143188689951898502147897333699997236766654076886520202578
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH-----C-C--CCCHHHH---HHHHHHHHCCC-EEEECCCCCC
Q ss_conf 68999876548999999838721689999995999997-----1-8--9977999---99999985798-0895078867
Q gi|254781018|r 231 SIWSEFNAVTNEMMENIQKKDAEKTYKSVRVNQSLLES-----I-G--VVPETVG---KFIRCIENNGG-SAKIAGAGSI 298 (337)
Q Consensus 231 ~~~~~~~~i~~~~~~al~~~d~~~l~~~~~~~~~ll~~-----l-~--vs~~~l~---~l~~~~~~~g~-~ak~sGAG~~ 298 (337)
..+.........+..+++++|++.+++.+..+-..+.. + . .-+|... ++++.+++.|. ++-.+|||++
T Consensus 204 ~~~~~~~~~~~~~~~al~~~D~~~l~~~~e~d~~~lHa~~~~~~pp~~~~~~~t~~vi~~i~~~r~~G~~~~~t~dAGPn 283 (317)
T 2gs8_A 204 QWVEQSAIDYQHMLTYLKTNNFEKVGQLTEANALAMHATTKTANPPFSYLTKESYQAMEAVKELRQEGFACYFTMDAGPN 283 (317)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSSSCCCSCCHHHHHHHHHHHHHHHTTCCEEEECCSSSC
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCHHHHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf 88987436799999999879999999999999999999998359972421825999999999999689829999268826
Q ss_pred CCCEEEEEEEECCCHHHHHHH--CCCEEEEEEE
Q ss_conf 885089999857997999974--5986999998
Q gi|254781018|r 299 RGEKAGLVLVGGYNPEKLSSL--YGYTCYKIKE 329 (337)
Q Consensus 299 ~Gg~~~~~l~~~~~~~~~~~~--~~~~~~~~~~ 329 (337)
.+++....+.+++.+. ..|+++..++
T Consensus 284 -----V~~l~~~~~~~~i~~~l~~~~~~i~~~~ 311 (317)
T 2gs8_A 284 -----VKVLCLEKDLAQLAERLGKNYRIIVSKT 311 (317)
T ss_dssp -----EEEEEEGGGHHHHHHHHHTTSEEEEEEB
T ss_pred -----EEEEECHHHHHHHHHHHHHHCCEEEECC
T ss_conf -----7999736029999999976136998168
No 20
>1uek_A 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase; non-mevalonate pathway, GHMP superfamily; 1.70A {Thermus thermophilus} SCOP: d.14.1.5 d.58.26.5
Probab=99.79 E-value=2.2e-17 Score=126.88 Aligned_cols=228 Identities=14% Similarity=0.114 Sum_probs=143.5
Q ss_pred EEECCCEEEEE----CCCEE-ECCCEEEEEEECCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99858179997----44544-07954899876672799999848982999955766675321001233334332111112
Q gi|254781018|r 12 HSIAPAKVILS----GEYSS-LYGASALAVAITFYLRALLTTIEPSLIRIINSQTIEYSFEACRLLGHQIDQRHRDFIAK 86 (337)
Q Consensus 12 ~~~APGKi~L~----GEh~v-~~G~~ai~~aI~~~~~v~i~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (337)
...||.||+|+ |...| ||.-..+..+|+++-++++++.++. +.+ +.. .+.
T Consensus 2 ~~~spAKINL~L~i~~kr~dGyH~i~s~~~~i~l~D~i~i~~~~~~-~~~-~~p---------------~~~-------- 56 (275)
T 1uek_A 2 ERLAPAKVNLGLSVRFRREDGYHELHTLFAPFSLADRLVVEPVSSG-LHF-QGP---------------YGR-------- 56 (275)
T ss_dssp EEEEEEEEEEEEEEEEECTTSSEEEEEEEEEEEEEEEEEEEEESSC-EEE-EST---------------TGG--------
T ss_pred CEECCCEECCCEEECCCCCCCCCEEEEEEEEECCCEEEEEEECCCC-CEE-CCC---------------CCC--------
T ss_conf 6522520732500078589997523689999367539999987899-478-689---------------984--------
Q ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf 21033477788899999875115667887699998055410389853037899999999981877540258999999864
Q gi|254781018|r 87 KIPITSVLTHPNDLILYIFNRHLPHISCGISLDLHSTIPIGSGFGSSSAIISALSLALSSITHQPFCNKEKLIAETGYIE 166 (337)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~i~s~iP~~~GLGSSaA~~va~~~al~~~~~~~~~~~~~~~~~a~~~e 166 (337)
.+..... ...+... .....|+++.++++||+++|||||||.+++++.+++++++.+.. +.+++..+
T Consensus 57 ~Nlv~ka--------~~~~~~~-~~~~~~~~I~i~K~IP~gaGLGggSs~aaa~l~~~~~~~~~~~~----l~~~a~~l- 122 (275)
T 1uek_A 57 ENLAYRA--------ASLYLEA-AGQPGGVRILLEKRIPEGAGLGGGSSDAAQVLLALQALYPAEVD----LFALARTL- 122 (275)
T ss_dssp GSHHHHH--------HHHHHHH-TTCCCEEEEEEECCSCSSSSSCHHHHHHHHHHHHHHHHSCSCCC----HHHHHHHH-
T ss_pred CHHHHHH--------HHHHHHH-HCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCHH----HHHHHHHH-
T ss_conf 2389999--------9998886-28977769999858997676773579999999998764354047----99999972-
Q ss_pred HCCCCCCCCHHHHHHHHCCCEEEEC-CCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 1157787734578765326302402-785200147884399974971453799999999764120689998765489999
Q gi|254781018|r 167 RLQHGKTGIIDSTTIVMGGIIYINP-PQIIKNETLVGEWWAINTGMPESSTGECVSFVEQHFSQSSIWSEFNAVTNEMME 245 (337)
Q Consensus 167 ~~~~~~~sg~D~~~~~~gg~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~st~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 245 (337)
|.|+..+.+|+...... .+.......+..++++..+....+|+++++.+........ ...+.+.+
T Consensus 123 --------GsDvp~fl~g~~a~~~g~Ge~l~~~~~~~~~~vlv~P~~~iST~~ay~~~~~~~~~~~------~~~~~~~~ 188 (275)
T 1uek_A 123 --------GADVPFFLLGRGAEARGVGERLKPLALPPVPAVVFFPGLRVPTPLVYRAVRPEDFGPD------LPVEAILE 188 (275)
T ss_dssp --------CTTHHHHHHCSEEEEETTTTEEEEECCCCEEEEEEECCCCCCHHHHHHTCCGGGCCCC------CCHHHHHH
T ss_pred --------CCCCCCCCCCCCCEECCCCCEEEEECCCCCCEEEECCCCCCCHHHHHHHHHHHHCCCC------HHHHHHHH
T ss_conf --------8776531168663112564202671146542255147767776999987424315851------24788999
Q ss_pred HHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCC-EEEECCCCCC
Q ss_conf 9983872168999999599999718997799999999985798-0895078867
Q gi|254781018|r 246 NIQKKDAEKTYKSVRVNQSLLESIGVVPETVGKFIRCIENNGG-SAKIAGAGSI 298 (337)
Q Consensus 246 al~~~d~~~l~~~~~~~~~ll~~l~vs~~~l~~l~~~~~~~g~-~ak~sGAG~~ 298 (337)
++..++...+..-+ +....++ .|+++++.+.+++.|+ ++.|||||++
T Consensus 189 ~l~~~~~~~~~NdL---e~~~~~l---~P~i~~i~~~l~~~ga~~~~lSGSGst 236 (275)
T 1uek_A 189 ALARGEEPPYWNSL---EGPAFRL---FPELKEVRGRMRALGLRGVLMSGSGSA 236 (275)
T ss_dssp HHHHTCCCSCCBTT---HHHHHHH---CTHHHHHHHHHHHTTCEEEEECTTSSC
T ss_pred HHHHHHHHHHHCCH---HHHHHHH---CHHHHHHHHHHHHCCCCEEEEECHHHC
T ss_conf 87642056654554---6799886---859999999999679986999884124
No 21
>3lto_A Mevalonate diphosphate decarboxylase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.27A {Legionella pneumophila}
Probab=99.69 E-value=8.4e-14 Score=104.35 Aligned_cols=277 Identities=14% Similarity=0.100 Sum_probs=147.1
Q ss_pred CEEEECCCEEEEE---CCCE---EECCCEEEEEEECC-CEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 0899858179997---4454---40795489987667-279999984898299995576667532100123333433211
Q gi|254781018|r 10 HAHSIAPAKVILS---GEYS---SLYGASALAVAITF-YLRALLTTIEPSLIRIINSQTIEYSFEACRLLGHQIDQRHRD 82 (337)
Q Consensus 10 ~~~~~APGKi~L~---GEh~---v~~G~~ai~~aI~~-~~~v~i~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 82 (337)
.++|+||-.|=|+ |-.- .+=-.+.|++.++. +|+.+++..+...... ..... +....
T Consensus 2 ~~~a~Ap~NIAliKYWGK~d~~~~lP~n~SiSlTL~~~~T~t~v~~~~~~~~~~-d~~~l--------------ng~~~- 65 (323)
T 3lto_A 2 HWFAQAPANIALIKYMGKKDENSNLPDNSSLSYTLSNLLSSVKLEKLPTKKDIW-EPLTI--------------PGAPE- 65 (323)
T ss_dssp EEEEEEEEEEEEECCTTCBCTTTCCBSSCEEEEEEEEEEEEEEEEECSSSSCEE-CCBCT--------------TSSBC-
T ss_pred CCEEECCCEEEEEEECCCCCCCCCCCCCCEEEEEECCCCCEEEEEEECCCCCCC-EEEEE--------------CCEEC-
T ss_conf 834177544689830475688887899971256806996689999842677642-16898--------------98353-
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCC-HHHHHHH
Q ss_conf 111221033477788899999875115667887699998055410389853037899999999981877540-2589999
Q gi|254781018|r 83 FIAKKIPITSVLTHPNDLILYIFNRHLPHISCGISLDLHSTIPIGSGFGSSSAIISALSLALSSITHQPFCN-KEKLIAE 161 (337)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~i~s~iP~~~GLGSSaA~~va~~~al~~~~~~~~~~-~~~~~~~ 161 (337)
.. .. .....+.......+ +.......++++.+.+++|.++|||||||..+|++.+++.+++..... ...+.++
T Consensus 66 ~~-~~---~~~~~r~~~~l~~i--~~~~~~~~~~~I~s~N~~P~aaGLaSSASa~aA~~~aa~~~~~~~~~~~~~~~~~l 139 (323)
T 3lto_A 66 FN-LS---VEAQKRFIDHLVRL--KEYFGYVGGFLIQSSNNFPHSSGLASSASSFAALTKCASIALSELTQKPLPSIDEQ 139 (323)
T ss_dssp CC-CC---SHHHHHHHHHHHHH--HHHHTCCCCEEEEEEESSCTTTTCCCHHHHHHHHHHHHHHHHHHHHTCCCCCHHHH
T ss_pred CC-CC---HHHHHHHHHHHHHH--HHHCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH
T ss_conf 33-25---79999999999999--98679874289999568774312110567999999999999740322320028899
Q ss_pred HHHHHHCCCCCCCCHHHHHHHHCCCEEEECCCCCCCCCCCC--C--EEEEECCCCCCCHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf 99864115778773457876532630240278520014788--4--3999749714537999999997641206899987
Q gi|254781018|r 162 TGYIERLQHGKTGIIDSTTIVMGGIIYINPPQIIKNETLVG--E--WWAINTGMPESSTGECVSFVEQHFSQSSIWSEFN 237 (337)
Q Consensus 162 a~~~e~~~~~~~sg~D~~~~~~gg~~~~~~~~~~~~~~~~~--~--~~~i~~~~~~~st~~~~~~~~~~~~~~~~~~~~~ 237 (337)
+..++. +....+.|+|||++.....+........+ . .+++.......++.+..+.+....-....+....
T Consensus 140 s~~ar~------gSgSaarSi~GG~v~w~~~~~~~~~~~~~~~~~~i~vv~~~~k~vsS~~a~~~~~tsp~~~~~~~~~~ 213 (323)
T 3lto_A 140 AQLSRL------GSGSSCRSFYAPWALWTGDKVSAIDLPYKDLLHQVIVISSQEKEIPSRVAHKLVKTSPFYETRSERAE 213 (323)
T ss_dssp HHHHHT------TCGGGGGGGSCSEEEEETTEEEECCCSCCSCEEEEEECCCCTTCCCHHHHHHHGGGSTTTTTHHHHHH
T ss_pred HHHHHC------CCCCCCCHHHCCCEEEECCCCCEEECCCCCCCCEEEEECCCCCCCCCHHHHHHCCCCCCHHHHHHHHH
T ss_conf 999722------89974504428806850798753305764511159994277666772655510568976699998717
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHH----HHHHHH-C-CC--CCHHHHHHHHHHH----HCCC-EEEECCCCCCCCCEEE
Q ss_conf 6548999999838721689999995----999997-1-89--9779999999998----5798-0895078867885089
Q gi|254781018|r 238 AVTNEMMENIQKKDAEKTYKSVRVN----QSLLES-I-GV--VPETVGKFIRCIE----NNGG-SAKIAGAGSIRGEKAG 304 (337)
Q Consensus 238 ~i~~~~~~al~~~d~~~l~~~~~~~----~~ll~~-l-~v--s~~~l~~l~~~~~----~~g~-~ak~sGAG~~~Gg~~~ 304 (337)
.....++++|+++|++.+++++..+ |..... . .+ -+|+-..+++..+ +.|. +.-.+|||+ ..
T Consensus 214 ~~~~~~~~Al~~~d~~~l~~l~e~d~~~mHa~~~~s~pp~~y~~~~s~~~i~~v~~~r~~~G~~~~~T~DAGP-----nv 288 (323)
T 3lto_A 214 ANLKLLLNAFENKDWTSIYQICWHEFLDMHQLFKTCEKPFSYITDNTLHILSVIEKFWNEKGDGPVVTMDAGP-----NV 288 (323)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSCCCSCCHHHHHHHHHHHHHHHHHSCCCEEECCSSS-----CE
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCHHHHHHHHHHHHHHHCCCCEEEEECCCC-----CE
T ss_conf 7599999999747899999999999999899987059985501826999999999999966993699867883-----77
Q ss_pred EEEEECCCHHHHHHH
Q ss_conf 999857997999974
Q gi|254781018|r 305 LVLVGGYNPEKLSSL 319 (337)
Q Consensus 305 ~~l~~~~~~~~~~~~ 319 (337)
.++...++.+.+.++
T Consensus 289 ~vl~~~~~~~~v~~~ 303 (323)
T 3lto_A 289 HLLYRSDQTDLARQF 303 (323)
T ss_dssp EEEECGGGHHHHHHH
T ss_pred EEEECCCCHHHHHHH
T ss_conf 999754548999999
No 22
>1fi4_A Mevalonate 5-diphosphate decarboxylase; mixed alpha/beta structure, ATP binding, cholesterol biosynthesis, structural genomics, PSI; 2.27A {Saccharomyces cerevisiae} SCOP: d.14.1.5 d.58.26.2
Probab=99.61 E-value=9.2e-12 Score=91.51 Aligned_cols=270 Identities=14% Similarity=0.084 Sum_probs=150.1
Q ss_pred CEEEECCCEEEEECCCEEECC----------CEEEEEEEC---CCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCC
Q ss_conf 089985817999744544079----------548998766---7279999984898299995576667532100123333
Q gi|254781018|r 10 HAHSIAPAKVILSGEYSSLYG----------ASALAVAIT---FYLRALLTTIEPSLIRIINSQTIEYSFEACRLLGHQI 76 (337)
Q Consensus 10 ~~~~~APGKi~L~GEh~v~~G----------~~ai~~aI~---~~~~v~i~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 76 (337)
.+++.||-.|=|+ -||| .+.|++.++ .+|+.++...++.. . +..+ +
T Consensus 25 ~~t~~AP~NIAlI----KYWGKrd~~l~lP~n~SiS~TL~~d~~~T~Ttv~~s~~~~-----~----------d~~~--l 83 (416)
T 1fi4_A 25 TASVTAPVNIATL----KYWGKRDTKLNLPTNSSISVTLSQDDLRTLTSAATAPEFE-----R----------DTLW--L 83 (416)
T ss_dssp EEEEEECCEEEEE----CCCCEEETTTTEESSCEEEEEBCTTTSCEEEEEEECTTCC-----S----------CBCT--T
T ss_pred EEEEEEECCEEEE----ECCCCCCCCCCCCCCCCEEEEECCCCCEEEEEEEECCCCC-----C----------CEEE--E
T ss_conf 9999753433264----0157668767899998147893699987789999788887-----7----------8799--9
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHC----CCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC
Q ss_conf 43321111122103347778889999987511----56678876999980554103898530378999999999818775
Q gi|254781018|r 77 DQRHRDFIAKKIPITSVLTHPNDLILYIFNRH----LPHISCGISLDLHSTIPIGSGFGSSSAIISALSLALSSITHQPF 152 (337)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~g~~i~i~s~iP~~~GLGSSaA~~va~~~al~~~~~~~~ 152 (337)
+...... .......++.....+ ....... .......++|...+++|.++||+||||..+|++.+++.+++.++
T Consensus 84 NG~~~~~--~~~r~~~~l~~ir~l-~~~~~~~~~~~~~~~~~~l~I~S~NnfPtaaGLASSASg~AAl~~al~~l~~~~l 160 (416)
T 1fi4_A 84 NGEPHSI--DNERTQNCLRDLRQL-RKEMESKDASLPTLSQWKLHIVSENNFPTAAGLASSAAGFAALVSAIAKLYQLPQ 160 (416)
T ss_dssp TCCBSSS--SSSSHHHHHHHHHHH-HHHHHTTCTTSCCGGGSCEEEEEEECCCTTSCCCHHHHHHHHHHHHHHHHTTCCS
T ss_pred CCEECCC--CCHHHHHHHHHHHHH-HHHHHCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 9986576--308899999999999-9875401224653346228999956884224688899999999999999856778
Q ss_pred CCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCEEEECCCC------CCC-----CCCCCC--E-EEEECC-CCCCCHH
Q ss_conf 402589999998641157787734578765326302402785------200-----147884--3-999749-7145379
Q gi|254781018|r 153 CNKEKLIAETGYIERLQHGKTGIIDSTTIVMGGIIYINPPQI------IKN-----ETLVGE--W-WAINTG-MPESSTG 217 (337)
Q Consensus 153 ~~~~~~~~~a~~~e~~~~~~~sg~D~~~~~~gg~~~~~~~~~------~~~-----~~~~~~--~-~~i~~~-~~~~st~ 217 (337)
+ .+++..+|+..+ | ..+-|+|||++.....+. ... ...+.. . +++... +..+||.
T Consensus 161 ~-~~elS~lAR~GS--------G-SAcRSi~GG~v~W~~g~~~dgsds~A~~v~~~~~~p~l~~iilvv~~~~K~vsST~ 230 (416)
T 1fi4_A 161 S-TSEISRIARKGS--------G-SACRSLFGGYVAWEMGKAEDGHDSMAVQIADSSDWPQMKACVLVVSDIKKDVSSTQ 230 (416)
T ss_dssp C-HHHHHHHHHHHH--------G-GGGGGGSSSEEEEECCSCTTCTTCEEEEEECGGGSTTEEEEEEEECCCSCCCCHHH
T ss_pred C-HHHHHHHHHHCC--------C-CHHHHHHCCEEEECCCCCCCCCCCEEEECCCCCCCCCCEEEEEEECCCCCCCCCCC
T ss_conf 8-899999986106--------3-44556408877843788877876347871565566440038998346655565631
Q ss_pred HHHHHHHHHHCCCHHH-HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHC--------CCCCHHHHHHH---HHHHH
Q ss_conf 9999999764120689-998765489999998387216899999959999971--------89977999999---99985
Q gi|254781018|r 218 ECVSFVEQHFSQSSIW-SEFNAVTNEMMENIQKKDAEKTYKSVRVNQSLLESI--------GVVPETVGKFI---RCIEN 285 (337)
Q Consensus 218 ~~~~~~~~~~~~~~~~-~~~~~i~~~~~~al~~~d~~~l~~~~~~~~~ll~~l--------~vs~~~l~~l~---~~~~~ 285 (337)
.+...++........+ +...+...++..|++++|++.+++++..+-..+..+ -.-+|.-.+++ +..++
T Consensus 231 gm~~~v~tS~~~~~~~~~~a~~~~~~m~~Ai~~~Df~~~~ei~e~ds~~mHa~~l~s~Ppi~Y~~~~s~~ii~~v~~~r~ 310 (416)
T 1fi4_A 231 GMQLTVATSELFKERIEHVVPKRFEVMRKAIVEKDFATFAKETMMDSNSFHATCLDSFPPIFYMNDTSKRIISWCHTINQ 310 (416)
T ss_dssp HHHHHHHHCSHHHHHHHTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSCCCCCCHHHHHHHHHHHHHHH
T ss_pred CHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHH
T ss_conf 01115455757899998750668999999998389999999999989999999863699847568427999999999998
Q ss_pred --CC-CEEEECCCCCCCCCEEEEEEEECCCHHHHHH
Q ss_conf --79-8089507886788508999985799799997
Q gi|254781018|r 286 --NG-GSAKIAGAGSIRGEKAGLVLVGGYNPEKLSS 318 (337)
Q Consensus 286 --~g-~~ak~sGAG~~~Gg~~~~~l~~~~~~~~~~~ 318 (337)
.+ ..+-..+||+ -..++....+.+++..
T Consensus 311 ~~~~~~~~yT~DAGP-----Nv~il~~~~~~~~v~~ 341 (416)
T 1fi4_A 311 FYGETIVAYTFDAGP-----NAVLYYLAENESKLFA 341 (416)
T ss_dssp HHTSCCEEEEECSSS-----CEEEEEEGGGHHHHHH
T ss_pred HCCCCCEEEEECCCC-----CEEEEECHHHHHHHHH
T ss_conf 638972899967887-----7799974766999999
No 23
>3f0n_A Mevalonate pyrophosphate decarboxylase; cholesterol biosynthesis, lipid synthesis, lyase, steroid biosynthesis, sterol biosynthesis; 1.90A {Mus musculus} PDB: 3d4j_A
Probab=99.36 E-value=4e-09 Score=74.91 Aligned_cols=267 Identities=13% Similarity=0.076 Sum_probs=139.8
Q ss_pred CCCEEEECCCEEEEECCCEEECC----------CEEEEEEE---CCCEEEEEEECCCCE--EEEEECCCCCCCCCCCCCC
Q ss_conf 96089985817999744544079----------54899876---672799999848982--9999557666753210012
Q gi|254781018|r 8 TPHAHSIAPAKVILSGEYSSLYG----------ASALAVAI---TFYLRALLTTIEPSL--IRIINSQTIEYSFEACRLL 72 (337)
Q Consensus 8 ~p~~~~~APGKi~L~GEh~v~~G----------~~ai~~aI---~~~~~v~i~~~~~~~--~~~~s~~~~~~~~~~~~~~ 72 (337)
.--+++.||-.|=|+ -||| .+.|++.+ +.+|+.++..+++.. ..+++..
T Consensus 21 ~~~vT~~Ap~NIAlI----KYWGKrD~~l~lP~N~SiS~TL~~~~~~T~Ttv~~s~~~~~D~~~lNGk------------ 84 (414)
T 3f0n_A 21 DLMVTCTAPVNIAVI----KYWGKRDEALILPINSSLSVTLHQDQLKTTTTVAISKDFTEDRIWLNGR------------ 84 (414)
T ss_dssp CEEEEEEECCEEEEE----CCCCEEETTTTEESSCEEEEEBCTTTSCEEEEEEECTTCCSCEEEETTE------------
T ss_pred CEEEEEECCCCEEEE----ECCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEEECCCCCCCEEEECCE------------
T ss_conf 638999823675254----1257568877899998057980588867899999788887878999999------------
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHC-----CCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 333343321111122103347778889999987511-----566788769999805541038985303789999999998
Q gi|254781018|r 73 GHQIDQRHRDFIAKKIPITSVLTHPNDLILYIFNRH-----LPHISCGISLDLHSTIPIGSGFGSSSAIISALSLALSSI 147 (337)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~g~~i~i~s~iP~~~GLGSSaA~~va~~~al~~~ 147 (337)
. . ......+..++.....+........ .......++|...+++|..+||+||||..+|++.++..+
T Consensus 85 -----~--~--~~~~~Ri~~~l~~ir~~~~~~~~~~~~~~~p~~~~~~~~I~S~NnfPtaAGLASSASg~aALa~al~~l 155 (414)
T 3f0n_A 85 -----E--E--DVGQPRLQACLREIRRLARKRRSTEDGDTLPLSLSYKVHVASVNNFPTAAGLASSAAGYACLAYTLAQV 155 (414)
T ss_dssp -----E--E--CTTCHHHHHHHHHHHHHHHC-------CCHHHHHHSCEEEEEEECCCGGGCCCHHHHHHHHHHHHHHHH
T ss_pred -----E--C--CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf -----7--7--763578999999999998763111223346545564269985147616667888799999999999988
Q ss_pred HCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCEEEECCCC------CCCCC-----CCCC--EEEEE-CC-CC
Q ss_conf 18775402589999998641157787734578765326302402785------20014-----7884--39997-49-71
Q gi|254781018|r 148 THQPFCNKEKLIAETGYIERLQHGKTGIIDSTTIVMGGIIYINPPQI------IKNET-----LVGE--WWAIN-TG-MP 212 (337)
Q Consensus 148 ~~~~~~~~~~~~~~a~~~e~~~~~~~sg~D~~~~~~gg~~~~~~~~~------~~~~~-----~~~~--~~~i~-~~-~~ 212 (337)
++.+.. +..+|+.. .+|+ .-++|||++....... ..... .+.. ..+|. .. +.
T Consensus 156 ~~l~~~----lS~iARlG------SGSA---~RSi~GGfv~W~~g~~~dgsds~a~~i~~~~~~p~l~~iilivd~~~K~ 222 (414)
T 3f0n_A 156 YGVEGD----LSEVARRG------SGSA---CRSLYGGFVEWQMGEQADGKDSIARQIAPEWHWPQLRILILVVSADKKQ 222 (414)
T ss_dssp HTCCSC----CHHHHHHH------CGGG---GGGGSSSEEEECCCSCTTCTTCCEEEEECTTSCTTEEEEEEEESCCC-C
T ss_pred HCCCHH----HHHHHHHH------CCCC---CCCCCCCEEEECCCCCCCCCCCCCEECCCCCCCCCCCEEEEEECCCCCC
T ss_conf 535335----99999860------7885---3103166456046788788765303346644565100699982465566
Q ss_pred CCCHHHHHHHHHHHHCCCHHHHH-HHHHHHHHHHHHHCCCCHHHHHHHHHH----HHHHHH----CCCCCHHHH---HHH
Q ss_conf 45379999999976412068999-876548999999838721689999995----999997----189977999---999
Q gi|254781018|r 213 ESSTGECVSFVEQHFSQSSIWSE-FNAVTNEMMENIQKKDAEKTYKSVRVN----QSLLES----IGVVPETVG---KFI 280 (337)
Q Consensus 213 ~~st~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~al~~~d~~~l~~~~~~~----~~ll~~----l~vs~~~l~---~l~ 280 (337)
.+||..+...++...-.....+. ..+...++++||+++|++.+++++-.+ |.++.+ +-.-+|.-. .++
T Consensus 223 vsSt~gm~~~~~tSp~~~~r~~~~~~~~i~~m~~Ai~~~Df~~fgel~e~dsl~mHA~~l~s~Pp~~Y~~~~s~~ii~~V 302 (414)
T 3f0n_A 223 TGSTVGMQTSVETSTLLKFRAESVVPERMKEMTRCIQEQDFQGFAQLTMKDSNQFHATCLDTFPPISYLNDTSRRIIQLV 302 (414)
T ss_dssp CCHHHHHHHHHHHCHHHHHHHHHTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSCCCCCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHH
T ss_conf 77678776401036479999998658999999999995999999999999999999998547998587676489999999
Q ss_pred HHHHH-C-CC-EEEECCCCCCCCCEEEEEEEECCCHHHHH
Q ss_conf 99985-7-98-08950788678850899998579979999
Q gi|254781018|r 281 RCIEN-N-GG-SAKIAGAGSIRGEKAGLVLVGGYNPEKLS 317 (337)
Q Consensus 281 ~~~~~-~-g~-~ak~sGAG~~~Gg~~~~~l~~~~~~~~~~ 317 (337)
+..++ . +. ++--.+||+. ..++....+.+++.
T Consensus 303 ~~~r~~~~~~~v~~T~DAGPN-----v~il~~~~~~~~v~ 337 (414)
T 3f0n_A 303 HRFNTHHGQTKVAYTFDAGPN-----AVIFTLEDTVAEFV 337 (414)
T ss_dssp HHHHHHHTSCCEEEECCSSSC-----EEEEEEHHHHHHHH
T ss_pred HHHHHHCCCCCEEEEECCCCC-----EEEEEECCCHHHHH
T ss_conf 999996699768999788878-----79997325499999
No 24
>2hke_A Diphosphomevalonate decarboxylase, putative; mevalonate diphosphate decarboxylase, lyase; 1.80A {Trypanosoma brucei}
Probab=99.33 E-value=2.6e-08 Score=69.76 Aligned_cols=260 Identities=12% Similarity=0.067 Sum_probs=140.5
Q ss_pred CEEEECCCEEEEECCCEEECCC------------EEEEEEEC---CCEEEEEEECCCCE--EEEEECCCCCCCCCCCCCC
Q ss_conf 0899858179997445440795------------48998766---72799999848982--9999557666753210012
Q gi|254781018|r 10 HAHSIAPAKVILSGEYSSLYGA------------SALAVAIT---FYLRALLTTIEPSL--IRIINSQTIEYSFEACRLL 72 (337)
Q Consensus 10 ~~~~~APGKi~L~GEh~v~~G~------------~ai~~aI~---~~~~v~i~~~~~~~--~~~~s~~~~~~~~~~~~~~ 72 (337)
-+++.||-.|=|+ -|+|. +.|++.++ .+++.++..+++.. ..+.+
T Consensus 5 ~vt~~AP~NIAlI----KYWGKrD~~e~L~lP~N~SiS~TL~~~~~~T~Ttv~~~~~~~~D~~~lN-------------- 66 (380)
T 2hke_A 5 CVTVEAPINIAFI----KYWGKREGGETLILPTNDSFSITLSASPFRSKTSVELRDDIETDTLRLN-------------- 66 (380)
T ss_dssp EEEEEECCEEEEE----CCCCBCTTCTTTTCBSSCEEEEEBCSSSCCEEEEEEEESSCSSCEEEET--------------
T ss_pred EEEEEEECEEEEE----ECCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEEECCCCCCCEEEEC--------------
T ss_conf 1999820513465----3267778886777899980579955999768999998888877579999--------------
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCC-CCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCC
Q ss_conf 3333433211111221033477788899999875115-667887699998055410389853037899999999981877
Q gi|254781018|r 73 GHQIDQRHRDFIAKKIPITSVLTHPNDLILYIFNRHL-PHISCGISLDLHSTIPIGSGFGSSSAIISALSLALSSITHQP 151 (337)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~i~i~s~iP~~~GLGSSaA~~va~~~al~~~~~~~ 151 (337)
..........+...++..+..... ......++|....++|.++||+||||-.+|++.++..+++..
T Consensus 67 -------------G~~~~~~~~~ri~~~l~~ir~~~~~~~~~~~~~I~S~NnFPtaAGLASSAsg~AALa~al~~~~~~~ 133 (380)
T 2hke_A 67 -------------GTEVDVGKTPRVQSMLLHLRSTCPEELKNKKVNIVSENNFPTAAGMASSASGYCAMSAALIRAFKST 133 (380)
T ss_dssp -------------TEEECGGGCHHHHHHHHHHHTSSCHHHHTCEEEEEEEECSCTTSCCCHHHHHHHHHHHHHHHHHTCS
T ss_pred -------------CEECCCCCCHHHHHHHHHHHHHCHHHHCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf -------------9778742016899999999985614304751699975788205657877899999999999874254
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCEEEECCCCC------CCCC---C--C-CCE--EEEEC-CCCCCCH
Q ss_conf 54025899999986411577877345787653263024027852------0014---7--8-843--99974-9714537
Q gi|254781018|r 152 FCNKEKLIAETGYIERLQHGKTGIIDSTTIVMGGIIYINPPQII------KNET---L--V-GEW--WAINT-GMPESST 216 (337)
Q Consensus 152 ~~~~~~~~~~a~~~e~~~~~~~sg~D~~~~~~gg~~~~~~~~~~------~~~~---~--~-~~~--~~i~~-~~~~~st 216 (337)
. .+..+|+.. .|| -.-|+|||++.....+.. .... . + ... ++|.. .+..+||
T Consensus 134 ~----~lS~lAR~G------SGS---AcRSi~GGfv~W~~g~~~dgsds~A~qi~~~~~w~~l~~~ilvvs~~~K~vsSt 200 (380)
T 2hke_A 134 T----NVSMLARLG------SGS---ACRSAFGGFVIWNKGEKPDGSDCVATQFVDETHWPEIQVMCAVLKGAQKDVSST 200 (380)
T ss_dssp S----CHHHHHHHH------CGG---GGGGGSSSEEEEECCSCTTSTTCEEEEEECTTSCTTEEEEEEECCCCSCCCCHH
T ss_pred H----HHHHHHHHH------CCC---CHHHHCCCEEEECCCCCCCCCCCCEEECCCCCCCCCCEEEEEEECCCCCCCCCH
T ss_conf 4----578998752------765---013303884572268999960000352366445511206999943776777752
Q ss_pred HHHHHHHHHHHCCCH-HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHC--------CCCCHHHHHHHHHHHH--
Q ss_conf 999999997641206-89998765489999998387216899999959999971--------8997799999999985--
Q gi|254781018|r 217 GECVSFVEQHFSQSS-IWSEFNAVTNEMMENIQKKDAEKTYKSVRVNQSLLESI--------GVVPETVGKFIRCIEN-- 285 (337)
Q Consensus 217 ~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~al~~~d~~~l~~~~~~~~~ll~~l--------~vs~~~l~~l~~~~~~-- 285 (337)
..+...++...-... ..+...+...++.++++++|++.|+++.-.+-..+..+ -.-+|.-..+++..++
T Consensus 201 ~GM~~~v~TSpl~~~r~~~~~~~~~~~~~~Ai~~~Df~~~~ei~e~ds~~mHA~~l~s~Ppi~Yl~~~S~~ii~~V~~~r 280 (380)
T 2hke_A 201 KGMQQSLKTSPLMKKRISETVPERMKIASRAIKARDFATFAEIAMLESDDLQEICATTEPKITYATEDSYAMIRLVKAYN 280 (380)
T ss_dssp HHHHHHHHHCTTHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTSSSCCCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHH
T ss_conf 88999988391089999986377899999999839999999999999999999985379987997846999999999999
Q ss_pred ---CCC-EEEECCCCCCCCCEEEEEEEECCCHHHHHH
Q ss_conf ---798-089507886788508999985799799997
Q gi|254781018|r 286 ---NGG-SAKIAGAGSIRGEKAGLVLVGGYNPEKLSS 318 (337)
Q Consensus 286 ---~g~-~ak~sGAG~~~Gg~~~~~l~~~~~~~~~~~ 318 (337)
.+. .+--.=||+ -..++....+.+++.+
T Consensus 281 ~~~~~~~v~yT~DAGP-----Nv~ll~~~~~~~~v~~ 312 (380)
T 2hke_A 281 AKKGRTALAYTFDAGA-----NCFLFVLKEDLPEAVA 312 (380)
T ss_dssp HHHTSCCEEEECCSSS-----CEEEEEEGGGHHHHHH
T ss_pred HHCCCCEEEEEECCCC-----CEEEEECCCCHHHHHH
T ss_conf 7468941999978898-----7799972512999999
No 25
>3k4g_A DNA-directed RNA polymerase subunit alpha; bacterial transcription regulation, DNA-directed RNA polymer nucleotidyltransferase; HET: MLY; 2.05A {Escherichia coli k-12} PDB: 1lb2_B* 1xs9_D
Probab=62.74 E-value=6.1 Score=17.01 Aligned_cols=56 Identities=7% Similarity=0.064 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHCCC--EEEEC
Q ss_conf 65489999998387216899999959999971-8997799999999985798--08950
Q gi|254781018|r 238 AVTNEMMENIQKKDAEKTYKSVRVNQSLLESI-GVVPETVGKFIRCIENNGG--SAKIA 293 (337)
Q Consensus 238 ~i~~~~~~al~~~d~~~l~~~~~~~~~ll~~l-~vs~~~l~~l~~~~~~~g~--~ak~s 293 (337)
.++.++.++|++.++..+++++..+..-+.++ ++-...++++.+.+.++|. |.++.
T Consensus 18 ~LSvR~~N~Lk~~gI~tvgdLv~~se~dLl~i~NfG~kSl~EI~~~L~~~gL~lgm~l~ 76 (86)
T 3k4g_A 18 ELTVRSANCLXAEAIHYIGDLVQRTEVELLXTPNLGXXSLTEIXDVLASRGLSLGMRLE 76 (86)
T ss_dssp CCCHHHHHHHHHTTCCBHHHHHHSCHHHHHTSTTCCHHHHHHHHHHHHTTTCCSSCCEE
T ss_pred CCCHHHHHHHCCCCCCCHHHHHHCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 78899998725543937999984899998178898772699999999985988899799
No 26
>1z3e_B DNA-directed RNA polymerase alpha chain; bacterial transcription regulation, disulfide stress; 1.50A {Bacillus subtilis} SCOP: a.60.3.1 PDB: 3ihq_B
Probab=62.60 E-value=6.2 Score=17.00 Aligned_cols=51 Identities=4% Similarity=0.055 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHCCC
Q ss_conf 65489999998387216899999959999971-8997799999999985798
Q gi|254781018|r 238 AVTNEMMENIQKKDAEKTYKSVRVNQSLLESI-GVVPETVGKFIRCIENNGG 288 (337)
Q Consensus 238 ~i~~~~~~al~~~d~~~l~~~~~~~~~ll~~l-~vs~~~l~~l~~~~~~~g~ 288 (337)
..+.++.++|++.++..+++++..+..-+.++ ++-...++++.+...++|.
T Consensus 15 ~LS~R~~N~L~~~~I~tv~dL~~~s~~dLl~i~n~G~kSl~EI~~~L~~~gl 66 (73)
T 1z3e_B 15 DLSVRSYNCLKRAGINTVQELANKTEEDMMKVRNLGRKSLEEVKAKLEELGL 66 (73)
T ss_dssp CCBHHHHHHHHHTTCCBHHHHHTSCHHHHHTSTTCCHHHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHCCCCCHHHHHHCCHHHHHHCCCCCHHHHHHHHHHHHHCCC
T ss_conf 6989999999894896799998689999974789866059999999998499
No 27
>3lu0_A DNA-directed RNA polymerase subunit alpha; E. coli RNA polymerase, nucleotidyltransferase, transcription, transferase; 11.20A {Escherichia coli} PDB: 3iyd_A
Probab=52.89 E-value=2.3 Score=19.65 Aligned_cols=55 Identities=7% Similarity=0.066 Sum_probs=42.6
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHCCC--EEEEC
Q ss_conf 5489999998387216899999959999971-8997799999999985798--08950
Q gi|254781018|r 239 VTNEMMENIQKKDAEKTYKSVRVNQSLLESI-GVVPETVGKFIRCIENNGG--SAKIA 293 (337)
Q Consensus 239 i~~~~~~al~~~d~~~l~~~~~~~~~ll~~l-~vs~~~l~~l~~~~~~~g~--~ak~s 293 (337)
++.++.++|++.++..+++++..+.+-|.++ +.--..++++.+.+.+.|+ |.++.
T Consensus 262 LSvRs~NcLkra~I~ti~dLv~~s~~dLl~ikNfGkKSl~EI~~kL~~~gl~lgm~l~ 319 (329)
T 3lu0_A 262 LTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLASRGLSLGMRLE 319 (329)
T ss_dssp ----------------------------------------------------------
T ss_pred CCHHHHHHHHHCCCCCHHHHHHCCHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCC
T ss_conf 7788886575718918999764799999558997620099999999974977778789
No 28
>1coo_A RNA polymerase alpha subunit; transcription regulation, nucleotidyl transferase; NMR {Escherichia coli K12} SCOP: a.60.3.1 PDB: 2jzb_A
Probab=51.35 E-value=5.5 Score=17.32 Aligned_cols=56 Identities=7% Similarity=0.065 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHCCC--EEEEC
Q ss_conf 65489999998387216899999959999971-8997799999999985798--08950
Q gi|254781018|r 238 AVTNEMMENIQKKDAEKTYKSVRVNQSLLESI-GVVPETVGKFIRCIENNGG--SAKIA 293 (337)
Q Consensus 238 ~i~~~~~~al~~~d~~~l~~~~~~~~~ll~~l-~vs~~~l~~l~~~~~~~g~--~ak~s 293 (337)
.++.+..++|++.++..+++++..+..-+.++ ++....++++.+.+.++|. |..+.
T Consensus 30 ~LSvRs~N~L~~~gI~tvgdLv~~se~dLl~~~n~G~KSl~EIk~~L~~~gL~lgm~l~ 88 (98)
T 1coo_A 30 ELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLASRGLSLGMRLE 88 (98)
T ss_dssp TCCTTTHHHHHTTTCCBHHHHHTSCHHHHTTSTTCCHHHHHHHHHHHHHTTCCTTCCCS
T ss_pred CCCHHHHHHHHHHCCCCHHHHHHCCHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 77899999873817938999985799999758897687899999999985977799789
No 29
>3gfk_B DNA-directed RNA polymerase subunit alpha; protein-protein complex, cytoplasm, redox-active center, stress response, transcription; 2.30A {Bacillus subtilis}
Probab=46.43 E-value=8.1 Score=16.24 Aligned_cols=51 Identities=4% Similarity=0.055 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHCCC
Q ss_conf 65489999998387216899999959999971-8997799999999985798
Q gi|254781018|r 238 AVTNEMMENIQKKDAEKTYKSVRVNQSLLESI-GVVPETVGKFIRCIENNGG 288 (337)
Q Consensus 238 ~i~~~~~~al~~~d~~~l~~~~~~~~~ll~~l-~vs~~~l~~l~~~~~~~g~ 288 (337)
..+.++.++|++.++..+++++..+..-+.++ ++-...++++.+.+.++|.
T Consensus 22 ~LS~R~~n~L~~~gI~tv~dL~~~s~~dLl~i~n~G~kSl~EI~~~L~~~gL 73 (79)
T 3gfk_B 22 DLSVRSYNCLKRAGINTVQELANKTEEDMMKVRNLGRKSLEEVKAKLEELGL 73 (79)
T ss_dssp CCBHHHHHHHHHTTCCBHHHHTTCCHHHHTTSTTCHHHHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHCCCCCHHHHHHCCHHHHHHCCCCCHHHHHHHHHHHHHCCC
T ss_conf 7989999999892896799998688999975789867379999999998589
No 30
>2a6h_A DNA-directed RNA polymerase alpha chain; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: d.74.3.1 d.181.1.1 PDB: 1smy_A* 1zyr_A* 1iw7_A* 2a69_A* 2a6e_A 2a68_A* 2be5_A* 2cw0_A 2o5i_A 2o5j_A* 2ppb_A* 3dxj_A* 3eql_A* 1i6v_A* 1ynj_A* 1l9z_A 1l9u_A* 1ynn_A* 2gho_A 1hqm_A ...
Probab=35.33 E-value=6.4 Score=16.88 Aligned_cols=51 Identities=14% Similarity=0.305 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHCCC
Q ss_conf 65489999998387216899999959999971-8997799999999985798
Q gi|254781018|r 238 AVTNEMMENIQKKDAEKTYKSVRVNQSLLESI-GVVPETVGKFIRCIENNGG 288 (337)
Q Consensus 238 ~i~~~~~~al~~~d~~~l~~~~~~~~~ll~~l-~vs~~~l~~l~~~~~~~g~ 288 (337)
+++.+..++|++.++..++++++.+..-+.++ +.....++++.+.+.+.|+
T Consensus 260 ~LSvRs~NcLk~a~I~ti~dLv~~s~~eLl~i~N~G~KSl~EI~ekL~~~Gl 311 (315)
T 2a6h_A 260 GLSTRVLHSLKEEGIESVRALLALNLKDLKNIPGIGERSLEEIKEALEKKGF 311 (315)
T ss_dssp ----------------------------------------------------
T ss_pred CCCHHHHHHHHHCCCCCHHHHHHCCHHHHHCCCCCCCCCHHHHHHHHHHCCC
T ss_conf 2879888678785994899987399999847999851039999999998599
No 31
>3kp1_E D-ornithine aminomutase S component; 5 aminomutase (OAM), metal binding protein; HET: PLP B12 5AD; 2.01A {Clostridium sticklandii} PDB: 3kow_E* 3koy_E* 3koz_E* 3kp0_E* 3kox_E*
Probab=35.24 E-value=17 Score=14.25 Aligned_cols=58 Identities=17% Similarity=0.303 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCEEEECCCC
Q ss_conf 689998765489999998387216899999959999971899779999999998579808950788
Q gi|254781018|r 231 SIWSEFNAVTNEMMENIQKKDAEKTYKSVRVNQSLLESIGVVPETVGKFIRCIENNGGSAKIAGAG 296 (337)
Q Consensus 231 ~~~~~~~~i~~~~~~al~~~d~~~l~~~~~~~~~ll~~l~vs~~~l~~l~~~~~~~g~~ak~sGAG 296 (337)
.+|+-..+++..+++.-+.+-...+... .|-+.|.++-+-..+++.+.+-|+.+| |||
T Consensus 25 rFW~LaekiVdPliela~~hTsPSIERS------VLLRMGF~Sleak~iVe~v~~~gLlgK--GAG 82 (121)
T 3kp1_E 25 RFWEMAEKIVDPLLDLGKKNTTPSIERS------VLLRMGFSSLEAKAIVDKTMDRGLMGK--GAG 82 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHEECHHHHHH------HHHHTTCCHHHHHHHHHHHHHTTCGGG--CHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHHHH------HHHHHCHHHHHHHHHHHHHHHHCCCCC--CCC
T ss_conf 9999999987599999761488138999------999924117779999999998054457--755
No 32
>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus VF5} SCOP: a.100.1.12 c.2.1.6
Probab=24.88 E-value=25 Score=13.13 Aligned_cols=39 Identities=15% Similarity=0.123 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHC
Q ss_conf 689998765489999998387216899999959999971
Q gi|254781018|r 231 SIWSEFNAVTNEMMENIQKKDAEKTYKSVRVNQSLLESI 269 (337)
Q Consensus 231 ~~~~~~~~i~~~~~~al~~~d~~~l~~~~~~~~~ll~~l 269 (337)
..++++.+...++.+.++++|.+.+.+.+.+.++.++++
T Consensus 243 ~~l~~~~~~L~~l~~~i~~~d~~~l~~~l~~~~~~R~~~ 281 (281)
T 2g5c_A 243 KAIEGFEKSLNHLKELIVREAEEELVEYLKEVKIKRMEI 281 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
T ss_conf 999999999999999998589999999999999987439
No 33
>3hh1_A Tetrapyrrole methylase family protein; chlorobium tepidum, structural genomics, PSI-2, protein structure initiative; 1.85A {Chlorobaculum tepidum}
Probab=23.66 E-value=27 Score=12.99 Aligned_cols=23 Identities=26% Similarity=0.410 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHCCCEEEECCCC
Q ss_conf 79999999998579808950788
Q gi|254781018|r 274 ETVGKFIRCIENNGGSAKIAGAG 296 (337)
Q Consensus 274 ~~l~~l~~~~~~~g~~ak~sGAG 296 (337)
..+.++++.+.+..-.+-+|=||
T Consensus 67 ~~~~~~~~~l~~g~~v~lvSdaG 89 (117)
T 3hh1_A 67 RAVRQVIELLEEGSDVALVTDAG 89 (117)
T ss_dssp HHHHHHHHHHHTTCCEEEEEETT
T ss_pred HHHHHHHHHHHCCCCEEEEECCC
T ss_conf 88999999998499699995589
No 34
>3dzb_A Prephenate dehydrogenase; domain SWAP, PSI2, NYSGXRC, tyrosine biosynthesis, EC:1.3.12.-, structural genomics; 2.46A {Streptococcus thermophilus lmg 18311}
Probab=22.65 E-value=28 Score=12.86 Aligned_cols=36 Identities=8% Similarity=0.207 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHC
Q ss_conf 998765489999998387216899999959999971
Q gi|254781018|r 234 SEFNAVTNEMMENIQKKDAEKTYKSVRVNQSLLESI 269 (337)
Q Consensus 234 ~~~~~i~~~~~~al~~~d~~~l~~~~~~~~~ll~~l 269 (337)
+++.....++.++|+++|.+.+.+.+.+.+..++.+
T Consensus 253 ~~~~~~l~~l~~~l~~~D~~~l~~~~~~a~~~R~~l 288 (317)
T 3dzb_A 253 EDFKKRLDHVADLIKAEDESAIWEFFDNGRKKRKEM 288 (317)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHC
T ss_conf 999999999999998289999999999999999827
No 35
>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*
Probab=22.40 E-value=28 Score=12.83 Aligned_cols=38 Identities=16% Similarity=0.125 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHC
Q ss_conf 89998765489999998387216899999959999971
Q gi|254781018|r 232 IWSEFNAVTNEMMENIQKKDAEKTYKSVRVNQSLLESI 269 (337)
Q Consensus 232 ~~~~~~~i~~~~~~al~~~d~~~l~~~~~~~~~ll~~l 269 (337)
.++++.+..+++.++|.++|.+.+.+.+.+.+..+++|
T Consensus 276 ~l~~~~~~l~~l~~~i~~~d~~~l~~~l~~~~~~R~~l 313 (314)
T 3ggo_A 276 AIEGFEKSLNHLKELIVREAEEELVEYLKEVKIKRMEI 313 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHC
T ss_conf 99999999999999998079999999999999999742
Done!