HHSEARCH alignment of GI: 254781018 and SCOP domain: d1kkha1

Alignment
>d1kkha1 d.14.1.5 (A:1-180) Mevalonate kinase {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=100.00  E-value=2.1e-33  Score=226.37  Aligned_cols=177  Identities=21%  Similarity=0.209  Sum_probs=138.5

Q ss_pred             CCCEEEECCCEEEEECCCEEECCCEEEEEEECCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             96089985817999744544079548998766727999998489829999557666753210012333343321111122
Q gi|254781018|r    8 TPHAHSIAPAKVILSGEYSSLYGASALAVAITFYLRALLTTIEPSLIRIINSQTIEYSFEACRLLGHQIDQRHRDFIAKK   87 (337)
Q Consensus         8 ~p~~~~~APGKi~L~GEh~v~~G~~ai~~aI~~~~~v~i~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (337)
                      .+-..++|||||+|+|||+||+|++|+++|||+++++++++++++.+.+.+...............           ...
T Consensus         3 ~~~~~~~aPgkv~L~GEh~~~~G~~~l~~aI~~~~~v~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-----------~~~   71 (180)
T d1kkha1           3 GSHMIIETPSKVILFGEHAVVYGYRAISMAIDLTSTIEIKETQEDEIILNLNDLNKSLGLNLNEIK-----------NIN   71 (180)
T ss_dssp             TCCEEEEEEEEEEEECTTGGGGTCCEEEEEEEEEEEEEEEECCSSEEEEEETTTTEEEEEETTTGG-----------GCC
T ss_pred             CCEEEEECCEEEEEECCCEEECCCEEEEEEEECEEEEEEEECCCCCCCEEEECCCCEEEECCHHCC-----------CCC
T ss_conf             976999838799997468687298799999708799999988987752144034641454200112-----------358


Q ss_pred             CCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q ss_conf             10334777888999998751156678876999980554103898530378999999999818775402589999998641
Q gi|254781018|r   88 IPITSVLTHPNDLILYIFNRHLPHISCGISLDLHSTIPIGSGFGSSSAIISALSLALSSITHQPFCNKEKLIAETGYIER  167 (337)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~i~s~iP~~~GLGSSaA~~va~~~al~~~~~~~~~~~~~~~~~a~~~e~  167 (337)
                      .....+..+....+...+.+.......|++++++|++|.++|||||||++||++.+++++++.+++ ++++.++|+.+|+
T Consensus        72 ~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~i~i~s~iP~g~GLGSSaa~~va~~~al~~~~~~~l~-~~~l~~la~~~E~  150 (180)
T d1kkha1          72 PNNFGDFKYCLCAIKNTLDYLNIEPKTGFKINISSKIPISCGLGSSASITIGTIKAVSGFYNKELK-DDEIAKLGYMVEK  150 (180)
T ss_dssp             GGGSGGGHHHHHHHHHHHHHTTCCCCSCEEEEEEECSCSSSSSCHHHHHHHHHHHHHHHTTTCCCC-HHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHCCCCCCCHHHHHHHHHHHHHHCCCCC-HHHHHHHHHHHHH
T ss_conf             320034899999999999985889998779999415010037565400399999999998576799-8999999999999


Q ss_pred             CCCCCCCCHHHHHHHHCCCEEEECCCCCC
Q ss_conf             15778773457876532630240278520
Q gi|254781018|r  168 LQHGKTGIIDSTTIVMGGIIYINPPQIIK  196 (337)
Q Consensus       168 ~~~~~~sg~D~~~~~~gg~~~~~~~~~~~  196 (337)
                      .+++++||+|+++|.|||+++|++.+..+
T Consensus       151 ~~~g~~sg~D~~~~~~Gg~i~~~~~~~~~  179 (180)
T d1kkha1         151 EIQGKASITDTSTITYKGILEIKNNKFRK  179 (180)
T ss_dssp             HHSSSCCSHHHHHHHHCSEEEESSSCEEE
T ss_pred             HHCCCCCHHHHHHHHHCCEEEEECCCEEE
T ss_conf             86899878999999819979995796668


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S5 domain 2-like
superfamily: Ribosomal protein S5 domain 2-like
family: GHMP Kinase, N-terminal domain
domain: Mevalonate kinase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]