HHSEARCH alignment of GI: 254781018 and SCOP domain: d1kvka2

Alignment

Probab=99.83  E-value=2e-19  Score=138.31  Aligned_cols=135  Identities=18%  Similarity=0.247  Sum_probs=103.5

Q ss_pred             CCCCEEEEECCCCCCCHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHHHH
Q ss_conf             7884399974971453799999999764120-----6899987654899999983-------872168999999599999
Q gi|254781018|r  200 LVGEWWAINTGMPESSTGECVSFVEQHFSQS-----SIWSEFNAVTNEMMENIQK-------KDAEKTYKSVRVNQSLLE  267 (337)
Q Consensus       200 ~~~~~~~i~~~~~~~st~~~~~~~~~~~~~~-----~~~~~~~~i~~~~~~al~~-------~d~~~l~~~~~~~~~ll~  267 (337)
                      +|...+++.+++...+|..++..+++...+.     ..++.+++++.++.+++..       +|++.++++|++||.+++
T Consensus         2 lP~l~lll~~Tgv~r~T~~~v~~V~~~~~~~~~~~~~~l~~~~~l~~~a~~~l~~~~~~~~~~d~~~lg~lm~~~~~lL~   81 (169)
T d1kvka2           2 LPALQILLTNTKVPRSTKALVAGVRSRLIKFPEIMAPLLTSIDAISLECERVLGEMAAAPVPEQYLVLEELMDMNQHHLN   81 (169)
T ss_dssp             CCCEEEEEEECCCCCCHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf             99837999769984059999999999998596889999988759999999976426543014339999999999588887


Q ss_pred             HCCCCCHHHHHHHHHHHHCCCEEEECCCCCCCCCEEEEEEEECCC-HHHHH------HHCCCEEEEEEECCCCEEEC
Q ss_conf             718997799999999985798089507886788508999985799-79999------74598699999879970929
Q gi|254781018|r  268 SIGVVPETVGKFIRCIENNGGSAKIAGAGSIRGEKAGLVLVGGYN-PEKLS------SLYGYTCYKIKEDKNGTMLA  337 (337)
Q Consensus       268 ~l~vs~~~l~~l~~~~~~~g~~ak~sGAG~~~Gg~~~~~l~~~~~-~~~~~------~~~~~~~~~~~~~~~G~~i~  337 (337)
                      +++||+|++|.|++.++++|+++|+||||   ||+|++++..+.. .+.+.      +..+|+++.++++.+||+|+
T Consensus        82 ~lgVS~~~ld~lv~~a~~~g~gaKltGAG---gGGc~ial~~~~~~~~~~~~i~~~l~~~Gf~~~~~~i~~~Gv~i~  155 (169)
T d1kvka2          82 ALGVGHASLDQLCQVTAAHGLHSKLTGAG---GGGCGITLLKPGLERAKVEAAKQALTGCGFDCWETSIGAPGVSMH  155 (169)
T ss_dssp             HHTCCCHHHHHHHHHHHHTTCEEEECSSC---SSSEEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEEESCCCSEEE
T ss_pred             HCCCCHHHHHHHHHHHHHCCCCCCCCCCC---CCCEEEEEECCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCEEEE
T ss_conf             41767199999999999829551014789---887699985664239999999999997599589986589967994

SCOP domain information

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: GHMP Kinase, C-terminal domain
family: Mevalonate kinase
domain: Mevalonate kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]