HHSEARCH alignment of GI: 254781018 and SCOP domain: d1oj4a1

Alignment
>d1oj4a1 d.14.1.5 (A:1-163) 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase IspE {Escherichia coli [TaxId: 562]}
Probab=99.33  E-value=8e-11  Score=84.08  Aligned_cols=144  Identities=15%  Similarity=0.133  Sum_probs=98.0

Q ss_pred             EEECCCEEEEE---------CCCEEECCCEEEEEEECCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             99858179997---------445440795489987667279999984898299995576667532100123333433211
Q gi|254781018|r   12 HSIAPAKVILS---------GEYSSLYGASALAVAITFYLRALLTTIEPSLIRIINSQTIEYSFEACRLLGHQIDQRHRD   82 (337)
Q Consensus        12 ~~~APGKi~L~---------GEh~v~~G~~ai~~aI~~~~~v~i~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~   82 (337)
                      ...||+||+|+         |-|-    -..+.+.|+++-++++++.++..+.+......             .      
T Consensus         4 ~~~apAKINL~L~V~~kr~dgyH~----i~S~~~~i~l~D~i~i~~~~~~~~~~~~~~~~-------------~------   60 (163)
T d1oj4a1           4 QWPSPAKLNLFLYITGQRADGYHT----LQTLFQFLDYGDTISIELRDDGDIRLLTPVEG-------------V------   60 (163)
T ss_dssp             EEEEEEEEEEEEEEEEECTTSCEE----EEEEEEEEEEEEEEEEEEESSSCEEECSCBTT-------------B------
T ss_pred             CCCCCEEEEEEEEECCCCCCCCCE----EEEEEEEECCCCEEEEEECCCCCEEEECCCCC-------------C------
T ss_conf             776677688417767748999614----89999993278699988625642257237667-------------7------


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf             11122103347778889999987511566788769999805541038985303789999999998187754025899999
Q gi|254781018|r   83 FIAKKIPITSVLTHPNDLILYIFNRHLPHISCGISLDLHSTIPIGSGFGSSSAIISALSLALSSITHQPFCNKEKLIAET  162 (337)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~i~s~iP~~~GLGSSaA~~va~~~al~~~~~~~~~~~~~~~~~a  162 (337)
                       ....+..........   .............++++.++++||+++|||++||.+++++++++++++.+++. +++..+|
T Consensus        61 -~~~~n~~~k~~~~l~---~~~~~~~~~~~~~~~~I~i~KnIP~gaGLGGGSsnAAa~L~~l~~~~~~~l~~-~~l~~ia  135 (163)
T d1oj4a1          61 -EHEDNLIVRAARLLM---KTAADSGRLPTGSGANISIDKRLPMGGGLGGGSSNAATVLVALNHLWQCGLSM-DELAEMG  135 (163)
T ss_dssp             -CGGGSHHHHHHHHHH---HHHHHTTCSCTTCEEEEEEECCSCSSTTSCHHHHHHHHHHHHHHHHHTCCCCH-HHHHHHH
T ss_pred             -CCCCCHHHHHHHHHH---HHHHHHHHCCCCCCEEEEEEEEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCH-HHHHHHH
T ss_conf             -554425778888899---88544442355776499998525651035689715999999864222237999-9999999


Q ss_pred             HHHHHCCCCCCCCHHHHHHHHCCCEEEECC
Q ss_conf             986411577877345787653263024027
Q gi|254781018|r  163 GYIERLQHGKTGIIDSTTIVMGGIIYINPP  192 (337)
Q Consensus       163 ~~~e~~~~~~~sg~D~~~~~~gg~~~~~~~  192 (337)
                      ..+         |.|+..|.+++.......
T Consensus       136 ~~i---------GsDvpffl~~~~a~~~G~  156 (163)
T d1oj4a1         136 LTL---------GADVPVFVRGHAAFAEGV  156 (163)
T ss_dssp             GGG---------CTTHHHHHHCBCEEEETT
T ss_pred             HHC---------CCCCCCCCCCCCEEEEEC
T ss_conf             880---------994143205987899976


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S5 domain 2-like
superfamily: Ribosomal protein S5 domain 2-like
family: GHMP Kinase, N-terminal domain
domain: 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase IspE
species: Escherichia coli [TaxId: 562]