HHSEARCH alignment of GI: 254781018 and SCOP domain: d1ueka1

Alignment
>d1ueka1 d.14.1.5 (A:1-148) 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase IspE {Thermus thermophilus [TaxId: 274]}
Probab=99.11  E-value=6.9e-10  Score=78.19  Aligned_cols=134  Identities=18%  Similarity=0.185  Sum_probs=89.3

Q ss_pred             EEECCCEEEEE----CCCEE-ECCCEEEEEEECCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             99858179997----44544-07954899876672799999848982999955766675321001233334332111112
Q gi|254781018|r   12 HSIAPAKVILS----GEYSS-LYGASALAVAITFYLRALLTTIEPSLIRIINSQTIEYSFEACRLLGHQIDQRHRDFIAK   86 (337)
Q Consensus        12 ~~~APGKi~L~----GEh~v-~~G~~ai~~aI~~~~~v~i~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (337)
                      ...||+||+|+    |-..| ||.-..+.++|+.+-+++++++++... + +..               .+.        
T Consensus         2 ~~~aPAKINL~L~V~~kr~dGyH~l~s~~~~i~l~D~i~i~~~~~~~~-~-~~p---------------~~~--------   56 (148)
T d1ueka1           2 ERLAPAKVNLGLSVRFRREDGYHELHTLFAPFSLADRLVVEPVSSGLH-F-QGP---------------YGR--------   56 (148)
T ss_dssp             EEEEEEEEEEEEEEEEECTTSSEEEEEEEEEEEEEEEEEEEEESSCEE-E-EST---------------TGG--------
T ss_pred             CCCCCCEEEEEEEECCCCCCCCCEEEEEEEEEECCCCCEEECCCCCCC-C-CCC---------------CCC--------
T ss_conf             543130380457637627898550327999989765128971466411-2-565---------------443--------


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf             21033477788899999875115667887699998055410389853037899999999981877540258999999864
Q gi|254781018|r   87 KIPITSVLTHPNDLILYIFNRHLPHISCGISLDLHSTIPIGSGFGSSSAIISALSLALSSITHQPFCNKEKLIAETGYIE  166 (337)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~i~s~iP~~~GLGSSaA~~va~~~al~~~~~~~~~~~~~~~~~a~~~e  166 (337)
                      .+...+.       . ..+... .....++++.++.+||+++|||++||.+++++++++++++.++.    +.+++..+ 
T Consensus        57 ~Nlv~ka-------~-~~l~~~-~~~~~~~~I~i~K~IP~~aGLGGGSsnAAa~l~~l~~~~~~~~~----l~~la~~i-  122 (148)
T d1ueka1          57 ENLAYRA-------A-SLYLEA-AGQPGGVRILLEKRIPEGAGLGGGSSDAAQVLLALQALYPAEVD----LFALARTL-  122 (148)
T ss_dssp             GSHHHHH-------H-HHHHHH-TTCCCEEEEEEECCSCSSSSSCHHHHHHHHHHHHHHHHSCSCCC----HHHHHHHH-
T ss_pred             CCHHHHH-------H-HHHHHH-CCCCCEEEEEEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHH----HHHHHCCC-
T ss_conf             2133334-------5-566775-18875189999823788631167830454699999886135567----88862456-


Q ss_pred             HCCCCCCCCHHHHHHHHCCCEEEECC
Q ss_conf             11577877345787653263024027
Q gi|254781018|r  167 RLQHGKTGIIDSTTIVMGGIIYINPP  192 (337)
Q Consensus       167 ~~~~~~~sg~D~~~~~~gg~~~~~~~  192 (337)
                              |.|+..|..++.......
T Consensus       123 --------GsDVPffl~~~~~~~~G~  140 (148)
T d1ueka1         123 --------GADVPFFLLGRGAEARGV  140 (148)
T ss_dssp             --------CTTHHHHHHCSEEEEETT
T ss_pred             --------CCCCHHHCCCCCEEEEEE
T ss_conf             --------997124235987899982


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S5 domain 2-like
superfamily: Ribosomal protein S5 domain 2-like
family: GHMP Kinase, N-terminal domain
domain: 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase IspE
species: Thermus thermophilus [TaxId: 274]