BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254781018|ref|YP_003065431.1| GHMP kinase [Candidatus
Liberibacter asiaticus str. psy62]
(337 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254781018|ref|YP_003065431.1| GHMP kinase [Candidatus Liberibacter asiaticus str. psy62]
Length = 337
Score = 692 bits (1785), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 337/337 (100%), Positives = 337/337 (100%)
Query: 1 MKQQTSQTPHAHSIAPAKVILSGEYSSLYGASALAVAITFYLRALLTTIEPSLIRIINSQ 60
MKQQTSQTPHAHSIAPAKVILSGEYSSLYGASALAVAITFYLRALLTTIEPSLIRIINSQ
Sbjct: 1 MKQQTSQTPHAHSIAPAKVILSGEYSSLYGASALAVAITFYLRALLTTIEPSLIRIINSQ 60
Query: 61 TIEYSFEACRLLGHQIDQRHRDFIAKKIPITSVLTHPNDLILYIFNRHLPHISCGISLDL 120
TIEYSFEACRLLGHQIDQRHRDFIAKKIPITSVLTHPNDLILYIFNRHLPHISCGISLDL
Sbjct: 61 TIEYSFEACRLLGHQIDQRHRDFIAKKIPITSVLTHPNDLILYIFNRHLPHISCGISLDL 120
Query: 121 HSTIPIGSGFGSSSAIISALSLALSSITHQPFCNKEKLIAETGYIERLQHGKTGIIDSTT 180
HSTIPIGSGFGSSSAIISALSLALSSITHQPFCNKEKLIAETGYIERLQHGKTGIIDSTT
Sbjct: 121 HSTIPIGSGFGSSSAIISALSLALSSITHQPFCNKEKLIAETGYIERLQHGKTGIIDSTT 180
Query: 181 IVMGGIIYINPPQIIKNETLVGEWWAINTGMPESSTGECVSFVEQHFSQSSIWSEFNAVT 240
IVMGGIIYINPPQIIKNETLVGEWWAINTGMPESSTGECVSFVEQHFSQSSIWSEFNAVT
Sbjct: 181 IVMGGIIYINPPQIIKNETLVGEWWAINTGMPESSTGECVSFVEQHFSQSSIWSEFNAVT 240
Query: 241 NEMMENIQKKDAEKTYKSVRVNQSLLESIGVVPETVGKFIRCIENNGGSAKIAGAGSIRG 300
NEMMENIQKKDAEKTYKSVRVNQSLLESIGVVPETVGKFIRCIENNGGSAKIAGAGSIRG
Sbjct: 241 NEMMENIQKKDAEKTYKSVRVNQSLLESIGVVPETVGKFIRCIENNGGSAKIAGAGSIRG 300
Query: 301 EKAGLVLVGGYNPEKLSSLYGYTCYKIKEDKNGTMLA 337
EKAGLVLVGGYNPEKLSSLYGYTCYKIKEDKNGTMLA
Sbjct: 301 EKAGLVLVGGYNPEKLSSLYGYTCYKIKEDKNGTMLA 337
>gi|254781017|ref|YP_003065430.1| GHMP kinase [Candidatus Liberibacter asiaticus str. psy62]
Length = 324
Score = 39.3 bits (90), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 67/293 (22%), Positives = 125/293 (42%), Gaps = 36/293 (12%)
Query: 15 APAKVILSGEYSSLYGASALAVAITFYLRALLTTIEPSLIRIINSQTIEYSFEACRLLGH 74
AP ++L GE+ L+G +AL AI + LT + LI I +S LG
Sbjct: 12 APGSLVLMGEHGVLHGHAALVFAINKRVILYLTLRKDRLINIDSS------------LGQ 59
Query: 75 QIDQRHRDFIAKKIPITSVLTHPN-DLILYIFNRHLPHISCGISLDLHSTIPIGSGFGSS 133
+ + HP+ I+ N P SCG L + S + G GSS
Sbjct: 60 YCGS-----------LDLAMFHPSFSFIIMAINHIKP--SCGFDLKVISQLDSQLGLGSS 106
Query: 134 SAIISALSLALSSIT-HQPFCNKEKLIAETGYIERLQHGKTGIIDSTTIVMGGIIYINPP 192
+AI A++ AL ++ H+ E L + ++Q +GI + +I G I Y P
Sbjct: 107 AAITVAITAALLTLQYHKEPSPDEILTTAHAIVLKVQGISSGIDLAASIHGGLICYQMPK 166
Query: 193 QIIKNETLVGEWWAINTG--MPESSTGECVSFVEQHFSQ-----SSIWSEFNAVTNEMME 245
I+ + I +G P + + +S++E + + I++ ++ +
Sbjct: 167 YSIEKIDFIFPIHLIYSGYKTPTAQVLKKISYIEIEYPEINEINQKIYALMGKLSQISCQ 226
Query: 246 NIQKKDAEKTYKSVRVNQSLLESIGVVPETVGKFIRCIENNGG--SAKIAGAG 296
++ K+ + +++ Q LLE++GV + + + + ++KI+G+G
Sbjct: 227 ALRNKNLKVLAQAMNRQQGLLETLGVSDSKLSEIVWKLREQPHIMASKISGSG 279
>gi|254781020|ref|YP_003065433.1| isopentenyl pyrophosphate isomerase [Candidatus Liberibacter
asiaticus str. psy62]
Length = 337
Score = 32.0 bits (71), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 6/81 (7%)
Query: 187 IYINPPQIIKNETLVGEWWAINTGMPESSTGEC---VSFVEQHFSQSSIWSEFNAVTNEM 243
I P I +N+ +W I+ +PE S E V F+ + S + S N+M
Sbjct: 12 IVCKDPGIDRNKKFFDDWHLIHRALPEISFDEVDPSVEFLGKKLSFPLLISSMTGGNNKM 71
Query: 244 MENIQKK---DAEKTYKSVRV 261
+E I + AEKT ++ V
Sbjct: 72 IERINRNLAIAAEKTKVAMAV 92
>gi|254780357|ref|YP_003064770.1| hypothetical protein CLIBASIA_01210 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 394
Score = 24.6 bits (52), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 20/36 (55%)
Query: 72 LGHQIDQRHRDFIAKKIPITSVLTHPNDLILYIFNR 107
+ H+I H +F +IP TS +T + +L +F +
Sbjct: 159 IAHRISVAHNEFCIGRIPETSFVTIVVEFLLMVFCK 194
>537021.9.peg.753_1
Length = 1033
Score = 24.3 bits (51), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/62 (22%), Positives = 30/62 (48%), Gaps = 7/62 (11%)
Query: 122 STIPIGSGFGSSSAIISALSLALS-------SITHQPFCNKEKLIAETGYIERLQHGKTG 174
+ IP+G G GS + ++A +L ++ S+ + F N +++ I+ Q +
Sbjct: 370 NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
Query: 175 II 176
+I
Sbjct: 430 VI 431
>gi|254781016|ref|YP_003065429.1| diphosphomevalonate decarboxylase/isopentenyl-diphosphate
delta-isomerase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 355
Score = 23.1 bits (48), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 122 STIPIGSGFGSSSAIISALSLALSSITHQP 151
+ IP +G SS++ +AL+LAL I P
Sbjct: 114 NNIPTKAGLASSASGFAALTLALFRIYSIP 143
>gi|254780614|ref|YP_003065027.1| F0F1 ATP synthase subunit epsilon [Candidatus Liberibacter
asiaticus str. psy62]
Length = 135
Score = 23.1 bits (48), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 10 HAHSIAPAKVILSGEYSSLYGASALA-VAITFYLRALLTTIEPSLIRI 56
H ++P K + SGE S+ S L + + +LTTI+ ++ I
Sbjct: 8 HFELVSPEKCVFSGEVQSVVLPSELGDITVLVGHAPVLTTIKSGIVTI 55
>gi|254781158|ref|YP_003065571.1| peptidyl prolyl cis-trans isomerase D signal peptide protein
[Candidatus Liberibacter asiaticus str. psy62]
Length = 631
Score = 22.7 bits (47), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 239 VTNEMMENIQKKDAEKTYKSVRVNQSLLESI 269
VTN + +Q+KD +Y + +N+ LL+S+
Sbjct: 576 VTNSKVGPVQEKDKFISYLTQMMNKDLLDSV 606
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.317 0.133 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 217,074
Number of Sequences: 1233
Number of extensions: 8990
Number of successful extensions: 27
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 19
Number of HSP's gapped (non-prelim): 8
length of query: 337
length of database: 328,796
effective HSP length: 74
effective length of query: 263
effective length of database: 237,554
effective search space: 62476702
effective search space used: 62476702
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 39 (19.6 bits)