BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254781018|ref|YP_003065431.1| GHMP kinase [Candidatus Liberibacter asiaticus str. psy62] (337 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254781018|ref|YP_003065431.1| GHMP kinase [Candidatus Liberibacter asiaticus str. psy62] Length = 337 Score = 692 bits (1785), Expect = 0.0, Method: Compositional matrix adjust. Identities = 337/337 (100%), Positives = 337/337 (100%) Query: 1 MKQQTSQTPHAHSIAPAKVILSGEYSSLYGASALAVAITFYLRALLTTIEPSLIRIINSQ 60 MKQQTSQTPHAHSIAPAKVILSGEYSSLYGASALAVAITFYLRALLTTIEPSLIRIINSQ Sbjct: 1 MKQQTSQTPHAHSIAPAKVILSGEYSSLYGASALAVAITFYLRALLTTIEPSLIRIINSQ 60 Query: 61 TIEYSFEACRLLGHQIDQRHRDFIAKKIPITSVLTHPNDLILYIFNRHLPHISCGISLDL 120 TIEYSFEACRLLGHQIDQRHRDFIAKKIPITSVLTHPNDLILYIFNRHLPHISCGISLDL Sbjct: 61 TIEYSFEACRLLGHQIDQRHRDFIAKKIPITSVLTHPNDLILYIFNRHLPHISCGISLDL 120 Query: 121 HSTIPIGSGFGSSSAIISALSLALSSITHQPFCNKEKLIAETGYIERLQHGKTGIIDSTT 180 HSTIPIGSGFGSSSAIISALSLALSSITHQPFCNKEKLIAETGYIERLQHGKTGIIDSTT Sbjct: 121 HSTIPIGSGFGSSSAIISALSLALSSITHQPFCNKEKLIAETGYIERLQHGKTGIIDSTT 180 Query: 181 IVMGGIIYINPPQIIKNETLVGEWWAINTGMPESSTGECVSFVEQHFSQSSIWSEFNAVT 240 IVMGGIIYINPPQIIKNETLVGEWWAINTGMPESSTGECVSFVEQHFSQSSIWSEFNAVT Sbjct: 181 IVMGGIIYINPPQIIKNETLVGEWWAINTGMPESSTGECVSFVEQHFSQSSIWSEFNAVT 240 Query: 241 NEMMENIQKKDAEKTYKSVRVNQSLLESIGVVPETVGKFIRCIENNGGSAKIAGAGSIRG 300 NEMMENIQKKDAEKTYKSVRVNQSLLESIGVVPETVGKFIRCIENNGGSAKIAGAGSIRG Sbjct: 241 NEMMENIQKKDAEKTYKSVRVNQSLLESIGVVPETVGKFIRCIENNGGSAKIAGAGSIRG 300 Query: 301 EKAGLVLVGGYNPEKLSSLYGYTCYKIKEDKNGTMLA 337 EKAGLVLVGGYNPEKLSSLYGYTCYKIKEDKNGTMLA Sbjct: 301 EKAGLVLVGGYNPEKLSSLYGYTCYKIKEDKNGTMLA 337 >gi|254781017|ref|YP_003065430.1| GHMP kinase [Candidatus Liberibacter asiaticus str. psy62] Length = 324 Score = 39.3 bits (90), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 67/293 (22%), Positives = 125/293 (42%), Gaps = 36/293 (12%) Query: 15 APAKVILSGEYSSLYGASALAVAITFYLRALLTTIEPSLIRIINSQTIEYSFEACRLLGH 74 AP ++L GE+ L+G +AL AI + LT + LI I +S LG Sbjct: 12 APGSLVLMGEHGVLHGHAALVFAINKRVILYLTLRKDRLINIDSS------------LGQ 59 Query: 75 QIDQRHRDFIAKKIPITSVLTHPN-DLILYIFNRHLPHISCGISLDLHSTIPIGSGFGSS 133 + + HP+ I+ N P SCG L + S + G GSS Sbjct: 60 YCGS-----------LDLAMFHPSFSFIIMAINHIKP--SCGFDLKVISQLDSQLGLGSS 106 Query: 134 SAIISALSLALSSIT-HQPFCNKEKLIAETGYIERLQHGKTGIIDSTTIVMGGIIYINPP 192 +AI A++ AL ++ H+ E L + ++Q +GI + +I G I Y P Sbjct: 107 AAITVAITAALLTLQYHKEPSPDEILTTAHAIVLKVQGISSGIDLAASIHGGLICYQMPK 166 Query: 193 QIIKNETLVGEWWAINTG--MPESSTGECVSFVEQHFSQ-----SSIWSEFNAVTNEMME 245 I+ + I +G P + + +S++E + + I++ ++ + Sbjct: 167 YSIEKIDFIFPIHLIYSGYKTPTAQVLKKISYIEIEYPEINEINQKIYALMGKLSQISCQ 226 Query: 246 NIQKKDAEKTYKSVRVNQSLLESIGVVPETVGKFIRCIENNGG--SAKIAGAG 296 ++ K+ + +++ Q LLE++GV + + + + ++KI+G+G Sbjct: 227 ALRNKNLKVLAQAMNRQQGLLETLGVSDSKLSEIVWKLREQPHIMASKISGSG 279 >gi|254781020|ref|YP_003065433.1| isopentenyl pyrophosphate isomerase [Candidatus Liberibacter asiaticus str. psy62] Length = 337 Score = 32.0 bits (71), Expect = 0.014, Method: Compositional matrix adjust. Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 6/81 (7%) Query: 187 IYINPPQIIKNETLVGEWWAINTGMPESSTGEC---VSFVEQHFSQSSIWSEFNAVTNEM 243 I P I +N+ +W I+ +PE S E V F+ + S + S N+M Sbjct: 12 IVCKDPGIDRNKKFFDDWHLIHRALPEISFDEVDPSVEFLGKKLSFPLLISSMTGGNNKM 71 Query: 244 MENIQKK---DAEKTYKSVRV 261 +E I + AEKT ++ V Sbjct: 72 IERINRNLAIAAEKTKVAMAV 92 >gi|254780357|ref|YP_003064770.1| hypothetical protein CLIBASIA_01210 [Candidatus Liberibacter asiaticus str. psy62] Length = 394 Score = 24.6 bits (52), Expect = 2.1, Method: Compositional matrix adjust. Identities = 11/36 (30%), Positives = 20/36 (55%) Query: 72 LGHQIDQRHRDFIAKKIPITSVLTHPNDLILYIFNR 107 + H+I H +F +IP TS +T + +L +F + Sbjct: 159 IAHRISVAHNEFCIGRIPETSFVTIVVEFLLMVFCK 194 >537021.9.peg.753_1 Length = 1033 Score = 24.3 bits (51), Expect = 2.8, Method: Compositional matrix adjust. Identities = 14/62 (22%), Positives = 30/62 (48%), Gaps = 7/62 (11%) Query: 122 STIPIGSGFGSSSAIISALSLALS-------SITHQPFCNKEKLIAETGYIERLQHGKTG 174 + IP+G G GS + ++A +L ++ S+ + F N +++ I+ Q + Sbjct: 370 NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429 Query: 175 II 176 +I Sbjct: 430 VI 431 >gi|254781016|ref|YP_003065429.1| diphosphomevalonate decarboxylase/isopentenyl-diphosphate delta-isomerase [Candidatus Liberibacter asiaticus str. psy62] Length = 355 Score = 23.1 bits (48), Expect = 6.1, Method: Compositional matrix adjust. Identities = 12/30 (40%), Positives = 18/30 (60%) Query: 122 STIPIGSGFGSSSAIISALSLALSSITHQP 151 + IP +G SS++ +AL+LAL I P Sbjct: 114 NNIPTKAGLASSASGFAALTLALFRIYSIP 143 >gi|254780614|ref|YP_003065027.1| F0F1 ATP synthase subunit epsilon [Candidatus Liberibacter asiaticus str. psy62] Length = 135 Score = 23.1 bits (48), Expect = 6.8, Method: Compositional matrix adjust. Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 1/48 (2%) Query: 10 HAHSIAPAKVILSGEYSSLYGASALA-VAITFYLRALLTTIEPSLIRI 56 H ++P K + SGE S+ S L + + +LTTI+ ++ I Sbjct: 8 HFELVSPEKCVFSGEVQSVVLPSELGDITVLVGHAPVLTTIKSGIVTI 55 >gi|254781158|ref|YP_003065571.1| peptidyl prolyl cis-trans isomerase D signal peptide protein [Candidatus Liberibacter asiaticus str. psy62] Length = 631 Score = 22.7 bits (47), Expect = 8.9, Method: Compositional matrix adjust. Identities = 11/31 (35%), Positives = 20/31 (64%) Query: 239 VTNEMMENIQKKDAEKTYKSVRVNQSLLESI 269 VTN + +Q+KD +Y + +N+ LL+S+ Sbjct: 576 VTNSKVGPVQEKDKFISYLTQMMNKDLLDSV 606 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.317 0.133 0.386 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 217,074 Number of Sequences: 1233 Number of extensions: 8990 Number of successful extensions: 27 Number of sequences better than 100.0: 8 Number of HSP's better than 100.0 without gapping: 7 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 19 Number of HSP's gapped (non-prelim): 8 length of query: 337 length of database: 328,796 effective HSP length: 74 effective length of query: 263 effective length of database: 237,554 effective search space: 62476702 effective search space used: 62476702 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 39 (19.6 bits)